Array 1 3663-8996 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBND01000027.1 Acinetobacter tjernbergiae strain DSM 14971, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================== ================== 3663 28 100.0 32 ............................ TAGTCCGAACCCGCTAAGTGTCGCGGCGGTCA 3723 28 100.0 32 ............................ TATTTAGGTGGACGTAGGTGGACGGATGGTAG 3783 28 100.0 32 ............................ TGCATAAGGTGCGACAAACTTGGCTTTAAAAT 3843 28 100.0 32 ............................ TACATGCATAATGTGAATAAACCTCCTTCGGG 3903 28 100.0 32 ............................ TGCATAAGGTGCGACAAACTTGGCTTTAAAAT 3963 28 100.0 32 ............................ ATGATGAAATCTACCACCCTTTAATTATTAGA 4023 28 100.0 32 ............................ AAACAAAACGATTGCGCCATTCGGCTTAATGA 4083 28 100.0 32 ............................ CAATATTCAAGCGCCAAGTATTGCGGCACCAC 4143 28 100.0 32 ............................ ACTGCCACAAATACCAAGTACTTTAAGACGCG 4203 28 100.0 32 ............................ TAAGAACGATCGTGGTGGGTTGGTTACTTCTT 4263 28 100.0 32 ............................ TGTGGGGCGATTCAATAAAGATGACTTTGTTG 4323 28 100.0 32 ............................ AATACGCTTTCACAGACTGCGATGGACAAGAA 4383 28 100.0 32 ............................ GAGTAGATCGCTATGCTACAAATAACACTGCC 4443 28 100.0 32 ............................ AATTCAAGCAAAGGGGCGCTTTCAATTGCAGC 4503 28 100.0 32 ............................ TACAAGCTGACTTTGAGTTTAAAGTTGTAGAA 4563 28 100.0 32 ............................ CCAAACCTTTTCACAAGAGTAATACGCTTTCT 4623 28 100.0 32 ............................ AGTGGATATGTTTGCAGCAATCAGCGGCTTAA 4683 28 100.0 32 ............................ ATCATCATCGCATTGTGTATATGGCAAATATT 4743 28 100.0 32 ............................ GTCAGGCTCAAAGCTTGGATCTTCACTAAACG 4803 28 100.0 32 ............................ TCACGCAGCATGGGTTCTTCGCTTTCTTCATT 4863 28 100.0 32 ............................ TGAATAGTCATTGCTCTGATTCTTGGAACGGT 4923 28 100.0 32 ............................ AGGAAAAGGCGGTGAATGTTTACCGCGTTCTG 4983 28 100.0 33 ............................ TATGCCGCAAAGCTAGAAAACGGTCATTCTGCG 5044 28 100.0 32 ............................ CTGTAAGACGCTCAAATAATCTCACACGACAT 5104 28 100.0 32 ............................ ATCACTTATCGAATTTTCAGGGGACGTTGAAG 5164 28 100.0 32 ............................ TTGGTGTAGAGATGACATTCACGCCACCTTGT 5224 28 100.0 32 ............................ TTTGCAAATCGTTGATGTGAAAGACGGCTATG 5284 28 100.0 32 ............................ AGGTGGGTTCACAGTTTTAAATTTTATACTTA 5344 28 100.0 32 ............................ TTTGTACAAATACAAATATTCAAAGTCATCTT 5404 28 100.0 32 ............................ AAGGAGATCCGTGACAGGCTGCAAAACCATAC 5464 28 100.0 32 ............................ CATAAAGTTAAAAAGTTCTGCCAACTTATAGG 5524 28 100.0 32 ............................ AATGATGAATGGGCAGCAGTTTATTTTACCAG 5584 28 100.0 32 ............................ GCAATAACAGCAGTACCCGCAGATACATCGAC 5644 28 100.0 32 ............................ CCGCTCATCTAGCCACACGTTTACATGGAAAT 5704 28 100.0 32 ............................ AAATTAACAATCCTGTCTCTGTTATACGTTTT 5764 28 100.0 32 ............................ TGTTGTCAATTGGATTACACTGTTGTCATAAC 5824 28 100.0 32 ............................ TAACGGCGGTCAGCAGTCTAAAGGGCTAACAC 5884 28 100.0 32 ............................ CTGAACGGCTTTTATGGTTAATCCCTCATAGA 5944 28 100.0 32 ............................ TACTGCCTGAGCAGCATCAAAGCCGACTTCTT 6004 28 100.0 32 ............................ ATCAACCTTATTCACTGCTGCCCAAAGGGATG 6064 28 100.0 32 ............................ TGCTGGCGCTCCTGCATTCCCGCCGTGCAGAC 6124 28 100.0 32 ............................ TTTGATGATGTACATTAAAGCGATGTTTCGCG 6184 28 100.0 32 ............................ ATATTAGTCCGCCAAGCCCTTTTAAACCTTGC 6244 28 100.0 32 ............................ AATGATTCATGTGTTGCCAGCAAAGTCTGTAA 6304 28 100.0 32 ............................ ATTTACTTCTGTCGTTTTAAGTTTCATTGGTT 6364 28 100.0 32 ............................ AGCTTGGTATGCGTAAAGCGAATGGCAGCAAC 6424 28 100.0 32 ............................ GAATCAACTATTAGCAGAGGCAGGCATTCAAT 6484 28 100.0 32 ............................ TGAACAGTCAATTGGTCAGGTTGTTCGTCTTA 6544 28 100.0 32 ............................ TGCGAGATGGCGTAATTTCCCATTTGGTGTTT 6604 28 100.0 32 ............................ ATCTGAGTCAACCATGTATTCACCACCTGAAG 6664 28 100.0 32 ............................ ATCTTGAGTCTTTGTTAGTGTCGTTTGACAAA 6724 28 100.0 32 ............................ GCTTGCTGGTTTGTGCTTCTGCGTCTCTCTTG 6784 28 100.0 32 ............................ ACTTTACTTTGTAAAGCACTTTCCTTTGTAAA 6844 28 100.0 32 ............................ ATCTTTTGTTACGATCAAGTAATTTGAATCTT 6904 28 100.0 32 ............................ TTGTAGGGCATTTAATACTTCTATTCTGTCCA 6964 28 100.0 32 ............................ ACAGCATTGGTAGGTAAAAAGTTATGTAATTT 7024 28 100.0 31 ............................ GTTGCCGAAGCTGCACCGTAGTAACCAGTTG 7083 28 100.0 33 ............................ TATGTCAAGCACAATTCTAAATTATTTATTTCT 7144 28 100.0 32 ............................ ATTCAGTGAGTTTTTAAGGTGAGTCCAAAACA 7204 28 100.0 32 ............................ TAGCACACTAGTCTATTAGTGTCAATCAGTAT 7264 28 100.0 32 ............................ CACTTTGATTAGTTCCTAAGTGTAAATAACTT 7324 28 100.0 32 ............................ TCTATGAAATCACTAGGCAATATTGTACTTGA 7384 28 100.0 32 ............................ TTAGAAATCCTTGTGAACCGTGCCTGACCTAG 7444 28 100.0 32 ............................ TTAGATAGCTTTTTAGTCTTTTCGTTGAAATT 7504 28 100.0 32 ............................ AATTCAAAGTTTAAAGCTTGGCTGAATAATTC 7564 28 100.0 32 ............................ TTATAGAATAAAAAGATTAATTCATTGATAAT 7624 28 100.0 32 ............................ GCATTAGAGCAACCGAAACAAGTTGAATCTGT 7684 28 100.0 33 ............................ CCTACAAAATAACTATTGATTTCAGCTTTAGCT 7745 28 100.0 32 ............................ TTAGGAAACGACCAATTCAAGCCAAATTTTCG 7805 28 100.0 32 ............................ TAATTTCTGACATGAGCAATGATGAATATCAC 7865 28 100.0 32 ............................ AATTCGAACGGTTCGTAGCGTTCTAAATAACC TA [7880] 7927 28 100.0 32 ............................ ATCCAGATATTGAGAATCATAGACTTGGTTGT 7987 28 100.0 32 ............................ AGCACCTTGACGCCCCACGGCACTATCAATTT 8047 28 100.0 32 ............................ TTTGTAACCAGTTGCCGAAGCTGCACCTTGTT 8107 28 100.0 32 ............................ GAGCAATCAACAAGGTCCTGACAAAGCCCGCG 8167 28 100.0 32 ............................ TTGCGCCAAACCACCTCTCACAGTGTCATTTC 8227 28 100.0 32 ............................ TAATACGCAAGTCCAAGTCAATATTCCAAAAT 8287 28 100.0 32 ............................ CATGACTTTTTGCTCACGCACAGCATTTGCTG 8347 28 100.0 54 ............................ ACTGGACTAGGCAGCTTAGAAAGCGCATGATGATAACTTTTCAATGGTCTTTTA 8429 28 100.0 32 ............................ TCAAACTTGTACATATTCTTTTCACATGGTTG 8489 28 100.0 32 ............................ AGAAGGCGGTAGACAAAAATATTGTAATCCAT 8549 28 100.0 32 ............................ GCTGCAAAAATCTGAACAGCTTGACGCACTTT 8609 28 100.0 32 ............................ TATAATCCAACAAAGCCTTTTGATGTTGATAC 8669 28 100.0 32 ............................ TCAGATTGCTCCTGATCTTTGGAAGCCTGCGA 8729 28 100.0 32 ............................ GTGTGGAGCATTGGCTCTTATTTGTTCTATGT 8789 28 100.0 32 ............................ AATCAATGGTTCAGCCAACTTTAGATTACATG 8849 28 100.0 32 ............................ TGCAGGCGCACCAGGCTTCTGCCATAACCAAA 8909 28 100.0 32 ............................ AGTAGGAGTAACAGTTCCAAAAACATTACAAA 8969 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================================== ================== 89 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCAGTAAACGCAATTTGTCTTTGCAGATTACTTATTTCAATCGTGTCCGCATCAATAATTGTAATTTTACCCACACCAGCTCGCGCGAGTAGCTCGCCACTCGTACAACCTATTCCCCCTGCACCAATAATTAAAACATTCGCAAGTTTTAATCGTTCTTGTGCATCTATGTCCCAACCATCTAATAAAATCTGACGACTATAGAGATGCATTTCCTCATTACTTAGTTCAAATTCGTTTTCTGAATGATTTGACACATTGGTTCTCTAAATTGTTTTAACAGTATTAGATTTTATGGATGTGGATGTGATTAGGAAAGGAAATTCTATTATTTAAGTTGATTTAGCTTTGACAATCCCCTTTTTTTACCCCAATATTTTATACACTCATTAACAGCTTAATAAAATCAATAAGTTACCACTTGGTCAAAAACTTTGGGTATTTACTCAAGTTTCTTGATAAACCTATGTTTTAGCTTGTATTATTGACTCTATTTTACT # Right flank : AACATTAGGAAATCGGGTATGAGATCAATGGTTGTTCACTGCCGTATAAGCTTTCAAATAAATGATTTTTATCCTGTTTCAACCATGAAAAGAATGCTTTGAAATTGTTGATATGAGAACACTTATACCAAATGGCGATAAAATTGATTTCTGAGAGGCTCAATTGGGCTGGTCGAATTCTTATAGAGTGACGACTTTGTTTAAGAAATTTCCAATAAGTTGCTTCAAATTTAAGAAAGAAATCATCGATTACACAGAATAATTCGGTACTATTGAACATTAGGACTAGAGCTTTAAGTTTGGTGTGGTAACTCAACTGATGGCTCTAGTCCTCTTATTTTTCAAGTCAATTTCTTATCCGAGATTCGGGTTAGTTAAGCTCCTTCTGATCATTCATGATTTCATAAGATTGTGCTCGGAGTAAATCTTCTTTTGTCGAAAATGCACTATTACGAAGTTGTTCAATTGATTGCTGTTTATTGGAATCACTCGGATTGTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 69272-59460 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBND01000001.1 Acinetobacter tjernbergiae strain DSM 14971, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 69271 28 100.0 32 ............................ GTAAAACACGCGGCTGGACAAAAGAAAGTGAT 69211 28 100.0 32 ............................ TATCAATGTAGGGCTAAAATTCGCATCAAAAT 69151 28 100.0 32 ............................ ACCATATCCGCCGCCAGTGCTTTGATTGCCTT 69091 28 100.0 32 ............................ TGACCAAGATAAGCTGACTTTTGGCGGCACAT 69031 28 100.0 32 ............................ AAGTGATTAGGTTGTCAAGTTCAAAAGAAACA 68971 28 100.0 32 ............................ AATCCGCCGCCTGCTTGAATCGTTCTAATGCC 68911 28 100.0 32 ............................ ATTTTCAGGTTTTAACTCGTGGTGGTATTGAT 68851 28 100.0 32 ............................ TATGAGTGATAAGAATGGTCGTGGTGGTGTGT 68791 28 100.0 32 ............................ TTGAAGCTTTAATTTCTCAGCATCTTGACAAT 68731 28 100.0 32 ............................ ATTGCAGAATATTCAAATTTCTACCTTGAAGC 68671 28 100.0 32 ............................ TCAAAATGCGTGACGACATGGTGAAAGCAAAT 68611 28 100.0 32 ............................ TGATCAATCCGAAGTTTTTCCGCTTCATAGTC 68551 28 100.0 32 ............................ ACGTATAAAGTATATCTCTTCAACAGAATATG 68491 28 100.0 32 ............................ CGATGGGCTTCTCGTTCAATACCAACGCCGTA 68431 28 100.0 32 ............................ CTTGAGCGCTTGCTCTAACTCGTCAGCGCATT 68371 28 100.0 32 ............................ GCCAAGAGTACGAAGCAAGCTTTGAAACTTAT 68311 28 100.0 32 ............................ AAAATTATGCAAGGGCATAACGTTTATGGCAC 68251 28 100.0 32 ............................ TGTTAAGACTGAGCTTGTTGAATTAACAAGCG 68191 28 100.0 32 ............................ TGATCGTAGACCGCTTCTAAAACTGAATAGCC 68131 28 100.0 32 ............................ TATAAGCAGCCATACGGCAAAGCATTACTTAC 68071 28 100.0 32 ............................ TAACCACCAAAGTTATTGGCTGTTGCTATGGA 68011 28 100.0 32 ............................ ACTACGCTCACGTACAGAGTACGAAAGGATAC 67951 28 100.0 32 ............................ AGAATCGTCAGAAACAACACCACGACCAACGC 67891 28 100.0 32 ............................ GTTCGCTGACCAATACGTTGTATGTGGTCAGG 67831 28 100.0 32 ............................ TGAGAAATAAGGAACTGTATTTATCCAAGTGA 67771 28 100.0 32 ............................ TGCACCAAACGAGCACCCAACTCTTTCATCTG 67711 28 100.0 32 ............................ ACCCGTTTCTGGGTCAGGTTCATTTTCTTTGA 67651 28 100.0 32 ............................ AGTCGTCATCCGTGAGCATGATGCTCGTGTCT 67591 28 100.0 32 ............................ AAGCTTGAGAACGGCGCGTTACTCCCGATCCG 67531 28 100.0 32 ............................ CACAAGGCGAACCAAAGCTTCTGAGCAATCTG 67471 28 100.0 32 ............................ ATGAATTTAATCGATGGGCTTAAATTAAAAAC 67411 28 100.0 32 ............................ TGAACTACCCGACTCTTTAAGCTCTCGCATTA 67351 28 100.0 32 ............................ TTGCGCATTACATTGATAGTGCAGATTTCCAA 67291 28 100.0 32 ............................ AAGCCGCTATTGCAGCCAAATTTAATTTAGAT 67231 28 100.0 32 ............................ AACCATATCGTCAACTAAGTAGCCACCAGTTA 67171 28 100.0 32 ............................ AACATAAAGACTCGATTCTAAAAGGCAATCAA 67111 28 100.0 32 ............................ CAAGAATGTTAGGGGCGTTTTAACGACATGAT 67051 28 100.0 32 ............................ TTAATACATGACCACCAACTCGCTGAATACCA 66991 28 100.0 32 ............................ GTACTGTTCAAGCCATTGATGAGCTGAACGCT 66931 28 100.0 32 ............................ AAGAAAAAATTGCAGTACCTGCTGACATGATT 66871 28 100.0 32 ............................ AAGCCTCTGAAAGCTTACACATTGGCATGGAT 66811 28 100.0 32 ............................ TCCAAAGATTGCCTCATAGTCTGCGATGGCTT 66751 28 100.0 32 ............................ AATTGAAATGAAGATGAATCCACAGGGATTTG 66691 28 100.0 32 ............................ TATTTTTCCATTAAAAATTAACTGCGTATCAT 66631 28 100.0 32 ............................ ATGAACTTCACCTATATGTGAAGCTAAAGCAC 66571 28 100.0 32 ............................ AATCAAAAAAGCAATGCGCTCATGTGACCAAT 66511 28 100.0 33 ............................ TACACGGATGCACAAGTTTAGCAAGTTTCATGC 66450 28 100.0 33 ............................ TCATAAGACATTTCATTTTCTAATTGCACTTTC 66389 28 100.0 32 ............................ ATCTGAGTCAACCATGTATTCACCACCTGAAG 66329 28 100.0 32 ............................ TGATGGGATTGATGATCTGACTGTTTTGACCG 66269 28 100.0 32 ............................ AGTTTCCGAAAACTGATCCGCAGCCCAAGCAA 66209 28 100.0 32 ............................ TTAGCAAACGACCAATTCAAGCCAAATTTTTG 66149 28 100.0 32 ............................ TATTCAGATAATTTGCTAGGGCCACAACAACC 66089 28 100.0 32 ............................ CACCAGAACTAAGCCAAGCACCCATGTCAACA 66029 28 100.0 32 ............................ ATGCAATAACTTCTTGATCTCGATTGAATGTA 65969 28 100.0 32 ............................ TTTGTAAAGTGGTCTACAAGTGAAATCTCATT 65909 28 100.0 32 ............................ ATCAAGCAGGGGCAATCTTTGTACAAGGTATA 65849 28 100.0 32 ............................ AAATAAAGAGGATGCAGAAGCATTACTTGATG 65789 28 100.0 32 ............................ AAACAAGATCACCACGCCCTTTCTTGTCAAAA 65729 28 100.0 32 ............................ CAATACTTAAGCCGTCTTGAGTCTTTGTTAGT 65669 28 100.0 32 ............................ TTGCTGCCAAAGTCTTTTTAATGTATATGCTT 65609 28 100.0 32 ............................ TGAACTTGTCAATTGCAATTTAAGATTTATTT 65549 28 100.0 32 ............................ ATTGGAAATATCAGCAAGAATTTGCTGTGCTT 65489 28 100.0 32 ............................ ACTGTAAATGCTGCTGTTGCAAATGCAGGAAA 65429 28 100.0 32 ............................ ATATACGGGTTATCACTTAGAAGAAGGTGGTA 65369 28 100.0 32 ............................ AATTCAGCGTTTCAGCATAAACAAGGTAGAAC 65309 28 100.0 32 ............................ AAATCCAATAAAGCACCAACACACTTAAAGCC 65249 28 100.0 32 ............................ TTCACAGGGTCGTTGCGATGCTTGTATAAATA 65189 28 100.0 32 ............................ AATAATTCATCCAACCTTGAGCCGTTGCTGGT 65129 28 100.0 32 ............................ GCCCCGAAAGGGGCTTTTTAATGCCTGTAGTT 65069 28 100.0 32 ............................ ATTGATTATCTAAAAACAGTTGATGCTTGTGA 65009 28 100.0 32 ............................ AACCTGAATCAAAACTTAATGCAGCCATTTTA 64949 28 100.0 32 ............................ GATGGGTAATTTTGGTAACGCTATGCCACAAG 64889 28 100.0 32 ............................ TTGGCTACACCGTTTAAAGCTTCGGTATAACC 64829 28 100.0 32 ............................ AATAGTGATTTACAGACGGCGGACAAGTTGCA 64769 28 100.0 32 ............................ TTCATGATATGTTCGTGAATGCAAAACGTTAT 64709 28 100.0 32 ............................ AGGTGTTTGTACTCGGCGTGTCATAAAAAGCC 64649 28 100.0 32 ............................ TGAGCGTCAGCAGTCTTTTTCATCAAATTTCA 64589 28 100.0 32 ............................ GTCTGTAAATCACTATTGGGTAGCAAGCGGCA 64529 28 100.0 32 ............................ AAAGTGACAAGCTGTACCAGCGTACGCAATTG 64469 28 100.0 32 ............................ TGATATTCGACTGAGCTGCTAAACATCTCAGA 64409 28 100.0 32 ............................ TTTGTAAAGTGGTCTACTTTACCTAGTAAACC 64349 28 100.0 32 ............................ AGTAGTTCATCCAGCCCTGTGCTGTTGTTGAT 64289 28 100.0 32 ............................ CAAAATGCTGCACTTACTTTAAACAGCGTTTA 64229 28 100.0 32 ............................ GCTGTATTGGGTCGGACGTGTGAACTGGTGAT 64169 28 100.0 32 ............................ AGCAAGCAAACCAGTTGCACCACCAATGGAAA 64109 28 100.0 32 ............................ AATATGAGGGTGAAGTATCTGGTTGTTGTCCA 64049 28 100.0 32 ............................ AAAACAAGTTGAATCGGTTGTGAGCATTAGTG 63989 28 100.0 32 ............................ GCTTGTATAAATCTGTATAAGAAATTTGGCTT 63929 28 100.0 32 ............................ AGATGGTGAGAACACATCTAAACAATACAAGC 63869 28 100.0 32 ............................ ACATCATCATTTTGAATTTCATTGGCACGAGA 63809 28 100.0 32 ............................ AATTCAAAGTTTAAAGCTTGGCTGAATAATTC 63749 28 100.0 32 ............................ TAAGTGTAAATAACTTTGTTTTTTAACCATTA 63689 28 100.0 32 ............................ TAGCACACTAGTCTATTAGTGTCAATCAGTAT 63629 28 100.0 32 ............................ TCGATAAACTTTGGGATAACTTCATTTCTAAA 63569 28 100.0 32 ............................ AGTATATTCAACTAGTAGTTTAGGGTCTGCTA 63509 28 100.0 32 ............................ CTTTAGCTATCTTTAAAATTCACCTTAAATTT 63449 28 96.4 32 A........................... TTTTGGATGCCTTTCTAATTCCCCTATTAAGA 63389 28 100.0 32 ............................ ACTATAAACGGCTATTGTCTATCTAGTGGTGC 63329 28 100.0 32 ............................ ATATTAAGCCCCTACAAAATAACTATTGATTT 63269 28 100.0 32 ............................ ATGGTAGTTATCAGCGTTTCTACGCTTATATT 63209 28 100.0 32 ............................ ATTAAAAACCTTGAAAATCCCCCCATAACGTT 63149 28 100.0 32 ............................ TAGCTGGATAAATACAACATCAGGCGCAACAA 63089 28 100.0 32 ............................ TTTACCCGTATTAAAGAAAATGCGCTGCTTCA 63029 28 100.0 32 ............................ ACTTGGTTAAAGCAGGAAAGCAAAGTTGGTTA 62969 28 100.0 32 ............................ ATTTGGTTTGTTGATGACATGGGGCTATAAAT 62909 28 100.0 32 ............................ GCCACTTCAAAACCTAAATTGCTCATAATCAG 62849 28 100.0 32 ............................ AGACGAACGTGATTTTATCTTTTTTCATCTAT 62789 28 100.0 32 ............................ ACTATAAACGGCTATTGTCTATCTAGTGGTGC 62729 28 100.0 32 ............................ TTAGAAATCCTTGTGAACCGTGCCTGACCTAG 62669 28 100.0 32 ............................ CAAAGGATGCAGCAGATCGCGCTGCATCGAAT 62609 28 100.0 32 ............................ TGACAGATATTTAATCCTTACCCCTTGATGCA 62549 28 100.0 32 ............................ ACTCGAAACATAGTAATAAAATCGAAGTCAAG 62489 28 100.0 32 ............................ TTGCCACGCCTTAAGGCATCTAAAAACTCAGG 62429 28 100.0 32 ............................ AACGCATACCGAGCAAGCACTGCGGTTGTGAA 62369 28 100.0 32 ............................ GGATGGATATTTTGATCGTGGCATGATCATGT 62309 28 100.0 32 ............................ TGACTTCGATAGAACAAAAAACAACTACAAGG 62249 28 100.0 32 ............................ AATCATCAAAATTCAAACCGCAAAACCGATCA 62189 28 100.0 32 ............................ ACCAACGGAAGATAAGACATTTCAACATGCGT 62129 28 100.0 32 ............................ TTTTTGCATAACATCAAGATCAAGCTTGTCTT 62069 28 100.0 32 ............................ GATTGCAGGAGCAATATATGGGCCAACATAAG 62009 28 100.0 33 ............................ AGCCTTGTGACTCAAAAAAAGCCCTTGCACCCT 61948 28 100.0 32 ............................ ATCTGGAACTTCTACTGCATCTGACAGTTCAT 61888 28 100.0 32 ............................ TCAAGAAGCTAAGATTGAAGTTCTAGAAGTTG 61828 28 100.0 32 ............................ AACCACCCACTTTAAATCCAGCTCATCTTGCT 61768 28 100.0 32 ............................ TATTGAAACAGGCTCGTGCAGTAAATGCACAG 61708 28 100.0 32 ............................ AGAAGAACAGGTTCAAGCTGCACAACCTGTTC 61648 28 100.0 32 ............................ ACGACCATTTCCAACGAGTACCGCTACAGCAT 61588 28 100.0 32 ............................ TAAATTGCTCATAATCAGCTCTCTTATAGTTC 61528 28 100.0 32 ............................ AGCTGGCAAAGCAACTGTACCAGTTGTTACTG 61468 28 100.0 32 ............................ GAACAAGCATTACCATCAACCGCCACTTCAAA 61408 28 100.0 32 ............................ AGCACCTTGACGCCCCACGGCACTATCAATTT 61348 28 100.0 32 ............................ TGATGCAGATGACTTGCTTTGTCGCAACCTCA 61288 28 100.0 32 ............................ TTTGTAACCAGTTGCCGAAGCTGCACCTTGTT 61228 28 100.0 32 ............................ AAGTTGTTTTGCCTGTGCCGATCGCTCCAGTA 61168 28 100.0 32 ............................ AAAAAACAAAAGTAATGCAAATTCACACTACT 61108 28 100.0 32 ............................ TGTTAGTGGACAAACTTCAACCATGATTTAAT 61048 28 100.0 33 ............................ CAAGACAAATCATTTGCAAGACATCACCTTTCA 60987 28 100.0 32 ............................ AAGAATTAAAGATAGCGGGTGATCAAGGTTTA 60927 28 100.0 32 ............................ TTGAAATTAATTGGCATAAATGCAGGGTGAAT 60867 28 100.0 32 ............................ AGTCACATTACGAAGTGAATACCAGATAGCAC 60807 28 100.0 32 ............................ AGAAGGCATAGATGGTGAGTTGGCAAAAGGAA 60747 28 100.0 32 ............................ TGACAAAGCCCGCGACCAATCACTTGTATAAT 60687 28 100.0 32 ............................ GATTGGCGCATTTACACCTGAACCTATTATTC 60627 28 100.0 32 ............................ GAAAAAAGAATCTTGAGAAAGGCGAGGTTTGT 60567 28 100.0 32 ............................ TGTGGAATCTAAGGTTAATTGAGCACTTGGAA 60507 28 100.0 32 ............................ TTCATATCTTACAAAACAAGCTTTAGACGCAA 60447 28 100.0 32 ............................ GTGTCGATATTGCATTTGATGACTTTGAATCA 60387 28 100.0 32 ............................ AAATGCAGTAGACGCATGAATCTCATCAAAGA 60327 28 100.0 32 ............................ ATCCAAATTGTTTAACACAGTCATTTATTTTT 60267 28 100.0 32 ............................ ATAACAACATTCCTTTTAAAAATGATTTGATT 60207 28 100.0 32 ............................ ATAGCATTCGACCTCAATTTGTGCAATCACGC 60147 28 100.0 32 ............................ CATGTGACCGCTTTCCAAACGGCTTAATTATT 60087 28 100.0 32 ............................ AATAAAATTGATATAGATGGACGTATTGTTTC 60027 28 100.0 32 ............................ ATAAAACTGTTGTACCAGGCAAAACCAATGTT 59967 28 100.0 32 ............................ GCCCGAAGGTGGCATTGGCTGGATCTACTTGT 59907 28 100.0 32 ............................ TTATAACGATCGCGAGCTTGGAGAGGGTGCAA 59847 28 100.0 32 ............................ GTTCGCTGACCAATACGTTGTATGTGGTCAGG 59787 28 100.0 32 ............................ AATTTCAAGCGAATCAGACCAAGTTAAACCAT 59727 28 100.0 32 ............................ ACAAACAAAAATCTGAATTGGCTTACCTGTAT 59667 28 100.0 32 ............................ TCAGAATGCAACAATGCAAGCTGGATTCCCAC 59607 28 100.0 32 ............................ AGACTCTACAGCACATGGTTTATTCCAAGTAT 59547 28 100.0 32 ............................ ATAAGCAATAGGACTGCTTAAGCTATCTTGTA 59487 28 89.3 0 A...........A...........T... | ========== ====== ====== ====== ============================ ================================= ================== 164 28 99.9 32 GTTCACTGCCATGTAGGCAGCTTAGAAA # Left flank : GATATCCGAAAATGGCTAGATCGTTTATTAGATTACACACATATCACGAGTGTACGTCCTGTCCCTGAAAATAGAATTACAGGCTATGCCATTTATAGGCGTAAACAGGTGAAAACTAATCCACAGCGTTTGGCTCGTCACCGTGTGAAGCGTGATGATATTGGTTTTGATGAAGCATTGGCTCGTTATAGTAATGTTGTAACAACAACGGATTTACCTTATATCCAATTGCAAAGTTTAAGCACTTCTGATGAACAAGATAAGAGACGGTTTAAGTTGTTCATTGAAAAGAAATCTGCTGAAAAATCTGAAACTCAGGTTTTTAGTACTTATGGTTTAAGTTCACAGAGTTCTGTACCCGAATTTTAACCCAATATTTTTATACTCTTTAACAGCTTAATAAAATCAATAAGTTATAAACGTGGGTTGAAACTTGGGTCTTTTACTAGATTTAAAGCTTAACTCACTGTTATAGCTTTATTTTTTGTGTTAATATTACA # Right flank : GTTTAAATTAAATATATTTTTATTTCCTAGTCATATTTTATTAGTTAAAATAAAAAAATAAAAAGAGTTTATGCTTTATTATTTTATGCGTAATTCAATATTATTTTTTGGGACTTATATTTGTGAAAAAATATCCTATTATTCTAAGTATTCTGTTATTTAGTTTCATACAAAGCGTATGGGCAAATATGAGTCCGAAAGCTCGAATTATCAATGGCAATCTGACTACAGAAGCACAAATCCCGTGGCAAGTTGCACTCATAGCTAGTCCCTTAGACCCTTATCAATCCTACATTTGCTCAGGAAGCTTAGTTGCAGATCGTTGGGTGGTGACAGCAGCACATTGTATTGAACAACTCGAAAAACAAAACAGTGATTATTATATTTTGATTGGCGCACAAAACTTACAAAGTATTCAATTAGGACAAATTATTAAAGTTAAAAAGGGGTATATACATGAGAAATATAATAATCATATTTATGATAACGATCTTGCACTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [90.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //