Array 1 211876-210688 **** Predicted by CRISPRDetect 2.4 *** >NZ_BONT01000069.1 Phytomonospora endophytica strain NBRC 110449 sequence069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 211875 29 100.0 32 ............................. GTGAGCCGCAGATCTGCGTCGAGGTCGTCCGG 211814 29 100.0 32 ............................. GCGGGCCTGACCGCCAACACCCCGACCGACCT 211753 29 100.0 32 ............................. CCTTGGCGCGGTGTTCACTGGATGAGGCCCGC 211692 29 100.0 32 ............................. TCCTGATCATGCCGAAACGCACCCTCGAAACC 211631 29 96.6 32 ...............A............. CGATCGTCAACGCGACCGATCGGCGCAACCAG 211570 29 100.0 32 ............................. CGCTCGCGCGAGCCGCTACGCCGCGTGAGGCA 211509 29 100.0 32 ............................. GTCAACCGGGCCATGGCCATCGAGGTCGTCGG 211448 29 100.0 32 ............................. TAGACCGTCGCGGTGTACGTCTCTCCACTCCA 211387 29 100.0 32 ............................. ATGGCCCGTCTCGGCGGCCTGGAGCTGGAGCC 211326 29 100.0 32 ............................. GTCATCATCGCGGGCACCGCGACCCCGGCGCC 211265 29 100.0 32 ............................. CTCTTCGGGCCTGCCGCGCTCGCGAGCCTCAT 211204 29 100.0 32 ............................. GTTGCAGCGCGTACGACTCTTGTAGTCAAGAC 211143 29 100.0 32 ............................. GGGCTGTAGACGTCCTTACCCTGCACGGACAG 211082 29 100.0 32 ............................. GCCGTCGGCCGCGGCCTGTCGCGCCGGTGCGT 211021 29 100.0 32 ............................. ACGACCCGTTTGCGCAGCAGGCCGGGGTCGGG 210960 29 100.0 32 ............................. GTTCTCCCGTGAGCACGGTCGCCGCGCGCAAC 210899 29 96.6 32 .............A............... CAGCTCGTACGACCTTGACGCCATGGCAAACG 210838 29 100.0 32 ............................. CGTGTCCCGGCTGCGGCGGGTGGCTGGAGGAG 210777 29 100.0 32 ............................. GAGCTGGGGAACAAGACGGCTCACCGTCGGTC 210716 29 93.1 0 .....................A..A.... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.3 32 GTGCTCTCCACGAGCGTGGAGGTGGTCCG # Left flank : TCCGGAGGTGATTAGGGTGTCGGCGATGCCGAGCC # Right flank : ATCCCGCGGTGTTCGGCGCGAGGGCCGGGTTGATCTGAATCGTCAACGTCCTCGGGGTACACCTCTGGGTACAGCCGCATCATCTCCTCCCGGAGTCACTCCTGCTGCTCAAGGTGTTCGTCGAACCAGCTCTGGTATCTGCTCTGCAATGGTGGGTCTGTTGGGCGATGCCGGCACCCGATCCCACGCAGCAACCGGTGCGAGTGTGCCGGACGGTCGGGGTGGCGCACACCGGGTTGGTCTGTGCCGGGGTCTCGGTGTGGAAAGACGGTGGCAGGTCGTGGGATCCGGTCTCGGCCTTACCGCGTTCGCACACTGATCTGGTGGCTGACGTCGACGCGTTCACCGAAGGCCGGTCGGCGAAGGGTGCGGGTGCTGCCGTCTTCGACGAGGTTGAGCTGTGTGGCTCCCAGCCGGGTGTGGGTGTCGACTTCGATGGCCAGCAGGCGGATGTCGCCTTCGGCGACGCGCACCGGGACGGTCAGGGGCGTGATCCGATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGAGCGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 488-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_BONT01000070.1 Phytomonospora endophytica strain NBRC 110449 sequence070, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 487 29 100.0 32 ............................. GTGAGGTGATGGCCGTGGACGTCGGCGAGGGC 426 29 100.0 32 ............................. GCCGACACCGACACCGATGAGTTCCACCCCAC 365 29 100.0 32 ............................. GACATGGCGACCGTCGCTATCCGCACGCAGGC 304 29 100.0 32 ............................. CCGCCGAGTTCGCCGCCTCGGCGATGGCTCAG 243 29 100.0 32 ............................. CGTGGCTGCGTAAACACGAGTTGCCTTTTGAT 182 29 100.0 32 ............................. CCGCGAAATAGCGTGTGGTACCTGCCGTCGTG 121 29 96.6 32 ............................T ACCCGCGAGAGTCAGCGGGAGGGGGGACAGGG 60 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGCTCTCCACGAGCGTGGAGGTGGTCCG # Left flank : GCACCAATGACTCACATCCACACGACGCTCGCTGTGGACATCGTCGCCTGGTCCTAACCGCGGGCCGGGTGGTGGCGCTGTTGCGTCCGGACAGCTTCCGGCTACTGTTCGTCGTCGCTTTCTGACTGTCTTGGTTGCCTCGTCGCAGCATGGCCCTCTACGACCTAACCGTCAGGAAGACCTTCCGCCGACAACCACCGGCTCGGAAACGCAGCCTCCGCTGATGCCTGGTAATGGCCTTCCTAGACCGGGACAAGACGCCAGGCCGCGTACACAGCGACACCCCGCAGCAGGCGCAAGTTCCCGGATTGCTGGCGAAATGAATCCACACGAACGCGGAATCAGTTGCTGAGGGATCGCGCCGCCCTAGAGGATGTCGGAGGTTCGGAACCTACTCTTGGCATGTGACGGGACATGCGGCAGGACGGATCATGCACGGCTGCGGAGCCATGGCTCGCCAAAACGTGCAAGAGGCTCGGTAAAGCTGCACTTCGCAAAGG # Right flank : GCGTTCAGGGGATCGGCTAGACAGCTGACCCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGAGCGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 101358-99561 **** Predicted by CRISPRDetect 2.4 *** >NZ_BONT01000089.1 Phytomonospora endophytica strain NBRC 110449 sequence089, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101357 29 100.0 32 ............................. CGGACGACTCGAAGCTGAACAAGACCTTGGAC 101296 29 100.0 32 ............................. TCGACGAGCTGGGGCAGCGGCATCGAGCAGCA 101235 29 100.0 32 ............................. ACCTGGGTGATGCACTTTTCGCTCTCGACCCG 101174 29 100.0 32 ............................. CTCATCGGCGCCGGCACCGACGACACGAAGTT 101113 29 100.0 32 ............................. ACCTGGCAGGCGTACGCGGCACTCCGCTACGC 101052 29 100.0 32 ............................. GGTTTGGAGTCGTTCGTCGATGACAACGGTGT 100991 29 100.0 32 ............................. TCACCGGCGTAGGCCTCGACGAGCTCGTCGGG 100930 29 100.0 32 ............................. ATCGGCCCCAGCCATCTCATCGACGAGGCCGA 100869 29 100.0 32 ............................. GACGTGAAGGTCTGGTCCGAGGTGGGAAAGCT 100808 29 96.6 32 ............................T GCCGTCAGCGCGTCCCGGATCAGCTGGGTAGC 100747 29 100.0 32 ............................. GCTTCGCCACGCGCCTGTCTGCGACGCTGCTC 100686 29 100.0 32 ............................. AACCGGCGGAACCCCGACTCGGGCGTGCGCAC 100625 29 100.0 32 ............................. CTGTGGGCGAAAGTCAGCGCTGGGAGCGCTGA 100564 29 100.0 32 ............................. GCACCGGGCAACTCAGCTGACCTGGCGAGCGC 100503 29 100.0 32 ............................. CGTTCAGGGGATCGGCTAGACAGCTGACCCCG 100442 29 100.0 32 ............................. AACATTAAGGATCTGATTGCGGAGATTGACAA 100381 29 100.0 32 ............................. CCGCCGGTGCGGGAGCCGCGCCGCTGGTACCT 100320 29 100.0 32 ............................. CCTCTCGGTGGTGCGTTCACAGTGGATCGGCT 100259 29 100.0 32 ............................. TTCGTAGGCGCCGTCGGGGTAGCCCATGTCGG 100198 29 100.0 32 ............................. CAGCCCAGGCATTCCCGCGACCAATGCGACAC 100137 29 100.0 32 ............................. ACCGTCGACGACACCCGCCCGTGGCTCGCCAC 100076 29 96.6 32 ............................T CATCGCCATTTGTCAGTCGCCCCAACGACATG 100015 29 100.0 32 ............................. GTCCGCCAGCTCCTGGGCTACCCCGGCACCCG 99954 29 100.0 31 ............................. ACGCGGGCGATTTCGATGCCGCGCTGTGATG 99894 29 96.6 32 C............................ GAACATCGAATCGAACAGCCACCGTACAACCC 99833 29 100.0 32 ............................. TGCGCGCCGGTGCGGGATGCGTCGACGTCGAC 99772 29 100.0 32 ............................. CTTGCGTGTTCGCGCCGCCGAGGTCGGTGAAC 99711 29 100.0 32 ............................. GAGTATCTCGGCTTCATTGCTGAGGAGGCTGG 99650 29 100.0 32 ............................. GCGGTGGGCGTGTCCGCATACGGGTCGCGTCC 99589 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.7 32 GTGCTCTCCACGAGCGTGGAGGTGGACCG # Left flank : CGCTGTCCCCAACCACAACCGGCCGGCCTCCGCATGACCTAGCCGCCGTTGTGACACGTACGCCGGATATCCCGTCGGCACCGTATCGAGTGCCTGGAACAACAGCATGATCTTTCCGAGGTCGTGCAGACCCGCGATGAGCTCAACCAAACGACACGCCGCGGCCTCGTCCAACCCGAGCTGATCGGCCAGCCACGCCCTGCTCCCCGGGGAAACGAACGACGACCACAGTTCCCGCACCATCGCCGCGGTGTCGAGAAGGTGGCAGACGACGGGGTAACGCACTCCGTCACCAAGATCCTTCGACTTTCCCCACAGACGCAGATCGACATCCCCAGGAGACGGACCCATCGAAGCCTCCAGTGCAGCAGCATGGCAACAAGGCCAGAACTTACTCTTGAGCGGTGACAGGACAACCGACAGTGGGGACGGTGTCTCGGCGCTCGACCCAGACGTGTCAAAACGTGCAAGAGGCTCAGTAAAACTGCACTTCGCGAAGG # Right flank : GAGCGGTTCAGCGGCGGGCTCGCTCGCATGTTGTGACAACGTATCCAGGGTGGCGGCTTGCCCTGGTCAGCGCCTCGTCGCTGGCCAATTGTGTTGAGCGCCGCAACCTGACTCGTGTTTACTGCGGTGCCGGTACCGGTGGTGTCGGCTTCGTCGTGGCTGGGAGTTTGCTCATGCAGGAGATAGATCCCGTTGCTCATAATCGGGCGGCTTGGGACCGGTACGTCGATGCGGGCAACGAGTGGTCGATACCGGTGGGTACCGACGATGTCGAGCGGGCTCGTGCGGGTGACTGGTCGATCGTTCTGATCGGGCGTGAGCCGGTCGATCGCACTTGGCTGCCGGCGGACCTGGCCGGTAGGGACGTCCTGTGCCTGGCGTCTGGTGGTGGTCAGCAGGGGCCGATCTTGGCTGCGGCGGGGGCGCGGGTGACGGTCTTCGACAACTCGCCTGGTCAGCTGGGGCAGGACCAGATGGTGGCCGAGCGTGACGGGCTCGAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGAGCGTGGAGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 111098-113993 **** Predicted by CRISPRDetect 2.4 *** >NZ_BONT01000089.1 Phytomonospora endophytica strain NBRC 110449 sequence089, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 111098 29 100.0 32 ............................. GCCTGGAAGATGCCGTACTGGCTGGCCAGGAT 111159 29 100.0 32 ............................. GACTTCGGCTAGGTAGTGGGGGTGGAGCTGGT 111220 29 100.0 32 ............................. GCGTCGACAGCATTCGTGGCCTGCTGCACGAG 111281 29 100.0 32 ............................. GCCCCTACCGCTGGTTTCAGAGCTGCGGCATC 111342 29 96.6 32 ............................T GCCTCGCCATGGTTGCCCTTGAGCCGGGAGGA 111403 29 100.0 32 ............................. TCATCGTCCACATCGTCCACCTCGGAGGTTCC 111464 29 100.0 32 ............................. GAGTCAACATGAGCAACAACGACACCGGCGAC 111525 29 100.0 32 ............................. CACGCGGAGATGGTGTGGCTGGGCGTCAACGT 111586 29 96.6 32 ............................A GACGCAGTCGGACAAGGACCTCGGTTTCGATG 111647 29 100.0 32 ............................. CCGGGGCGGAGTCGATTCGGCTCGGTGCCGAC 111708 29 100.0 32 ............................. GGAAAACCGCAACCCCAGCACGCCGCTCAAAT 111769 29 100.0 32 ............................. CCAGCGACGGCGACGTGTGGCAGGCCGTCCAC 111830 29 100.0 32 ............................. CCGCCTCTGCCGATGAGCTCGACGAGGACGAC 111891 29 100.0 32 ............................. GCGGCCGCCCGCGACGCGTGGGCTGAGGGCTG 111952 29 100.0 32 ............................. GCTCGTTGAGTGGTCCGAGACCCCGAACGCGC 112013 29 100.0 32 ............................. GATGTTTGTCACGTTCGCTTCGCTGTCCATAC 112074 29 100.0 32 ............................. GGCCGATGCACCGCGAGAAGCGCACGCTCCTG 112135 29 100.0 32 ............................. TCGACGTCGCGGAGGAGGCTTGACGCGGTCAT 112196 29 100.0 32 ............................. TAGGCCACGAGCGCGGCGAGGATCTGCGCGCC 112257 29 100.0 32 ............................. ACTTCGCGGGCGCGGCGGTTCTTCGCGGCACC 112318 29 96.6 32 ............................C ACAACACCCACCGCCTCATCCGGCCGGTGACC 112379 29 100.0 32 ............................. ATGTCCGGCCGCTTATCGCCCGTGCCGTAGAG 112440 29 96.6 32 ............................A TTGGGAACGATCTCCGGGAGAAAAAGGCCCGC 112501 29 100.0 32 ............................. CCGTCGGCGGCGGAGTGCAGCGTGGTGATGTC 112562 29 100.0 32 ............................. CCGCGTCCGGCCGAACGGCAACAGTTTCGACA 112623 29 96.6 32 ............................T GCCCTCCCCACGGGGTCACCTTGTCTCGCAGG 112684 29 100.0 32 ............................. ACGGAATGGACGCCAGCACAGGCGGCGAGCGC 112745 29 100.0 32 ............................. ATCATGAACGCGAACAACAGCCGGGAAGACGT 112806 29 100.0 32 ............................. CTTTCGCGAGGGCCGCCGCAGGCACCGCCAGG 112867 29 96.6 32 ............................C GATCGGCCGGACCCCCGACTGGGACAAATGGC 112928 29 100.0 32 ............................. TGGGATCGGACTTCACCGGGGAAAACACGGCA 112989 29 93.1 33 ...........A................T CGGCAGGCTCCCGGGGGGAGCGCGAGTTGGAGC 113051 29 100.0 32 ............................. GCCCGCACCGACATCCCGGCCCAGCTCGGCGA 113112 29 100.0 32 ............................. CGGTCGCAGTGAAAGCAGGGCACGCCGGTATG 113173 29 100.0 32 ............................. GCGCCCTGCCCCTGATCGGTGGGCGGCCCGTT 113234 29 100.0 32 ............................. GCCTCGCCGACGCGCCAGGCGAGCTCGTTGTT 113295 29 100.0 32 ............................. AGCGTCGCATCGCCGAGGCGGACCTCGTGCTC 113356 29 100.0 32 ............................. CTCCAGGTCGGTCGGGGTGTTGGCGGTCAGGC 113417 29 100.0 32 ............................. GCGTTGCCAGAACTCGTCTTCGGCGGCCGGCC 113478 29 100.0 32 ............................. CGCGGCTACCCAGGGACGGACGATTGGAGTCC 113539 29 100.0 32 ............................. GCGGAGAGGTCGGGTACAGCACCCGGTCGGGG 113600 29 96.6 32 ............................C GAGATGTCGACGGTTTCGGTGTCCTCGTCGAT 113661 29 100.0 32 ............................. CGCCCGCTCCGCCTCGGTGCAGGGTTTCCGTA 113722 29 100.0 32 ............................. CGATCGTCAACGCGACCGATCGGCGCAACCAG 113783 29 100.0 31 ............................. ATCCCCGCCGCGCTCGCGGAGTATCTCGCCG 113843 29 100.0 32 ............................. CCGACACCTCCGTGGGTGCTGACGTCATCCTC 113904 29 100.0 32 ............................. CGCTTTTAGTCAGTCAGCTCGTCATCGCCATC 113965 29 79.3 0 .......TG...A............AGT. | ========== ====== ====== ====== ============================= ================================= ================== 48 29 98.9 32 GTGCTCTCCACGGGCGTGGAGGTGGTCCG # Left flank : TCGTCAACGACATCCAGGCCCTCCTCGACCCCGACACCGACACCGACACCGACACCCCCGACGAGATACCCCAACCCCAAGTCGTGAACCTGTGGGACCCCATCCGCGGCGAACTCCCCGGCGGTGTCAACTACGCCACCAACGAAGACTGGTGAGGCAGGACCGCTGTGGCAAACATGGTCGTGATCGCGACAACCGCAGTACCTGACCACGTCCGCGGAGCACTCACCCGCTGGATGACCGAACCCGCACCGGGCCTCTACGTGGGCACCATGTCCGCGAAAGTCCGCGACGAACTCTGGTACGCCGTCGCCGCCTCAGTCGCCGACGGTGCCGCGGTATGCCTTTATCCCGCCGACAACGAACAGCGCTACGCCATCCGCACCGCCGGACAACGCCGACGCCGACCGATCGACTTCGACGGGCTCACTCTCGTGGCGTTCCAAGGCCTTGACGAGCAGAACGGTAAAACGGGTCAGTAAAAGGCCAGCTCGCGAAGG # Right flank : GGCCACAGTTTTCCGATGGCCGCAAGTGATCCGCATGACCAAGCAGCGCACGGCAACAAAGCCCGCCGCCAAGCTAGGGACGACGGTCGTGCCGCTAGAGGATGAACTCTGGCATCCGCCTGGGGCGAGCCTCCGCGGCGGACAAAGGCCGCCCTGGCGGTCGCGCGGGAGCGCTCTGCCAGCGTTCTCCGCATGGTGTCGGCTCGCTCCTTCTCACTACCGCCATTGTGACGAACTTATCGGCCTTCGCTCGGGAGACGGCTGCTCACCTTCCGCGCGCAGGCCTCCATGACCGCTCGCGCGTCCATCCCGAGCGACTCAATGGCCACCAGCGCGGTCAACGCGACGTCGGCCAATTCGGCGGCGACATCGTCGTGGGAGTGGGTGATCCCCTTGCGAGGGTTTTGTCCAACGGCGCCGATCCATGCGCCAGCGGCTTCCCCGGCCTCCTCAGTGACCTTGAGGATCCGGCAGGTCAGTTCCATCTGACTGGATCCGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGGGCGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //