Array 1 2901-111 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMHQ01000062.1 Acinetobacter baumannii AB_2008-23-01-01-7 AB_2008-23-01-01-7_63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2900 29 96.6 31 ............................T TCACCTGTAGTAACAGTTGTTAGATAACCCA 2840 29 96.6 31 ............................T CTGGAGTCATGGGGGCTAATTTATTTAAACG 2780 29 96.6 31 ............................T TATCCCTCGATCTGCTGTAACGTGGTGTGAG 2720 29 96.6 31 ............................C CAAGGTGTGCGCACCAAAGCAAAACCAATCT 2660 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 2600 29 100.0 31 ............................. TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 2540 29 96.6 31 ............................T TGTAAAACCTCTGGATTAAGCATTGCGTTCA 2480 29 96.6 31 ............................T CTTCCTGAGTTTTAATCCCATTTGCCTTACA 2420 29 96.6 31 ......T...................... AAATGACCATCAATCGACAGTGGTTTACCTT 2360 29 96.6 31 ............................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 2300 29 100.0 31 ............................. GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 2240 29 100.0 31 ............................. ACACGTTCTCTATATCGCTGTTTGCGGTCAT 2180 29 96.6 31 ............................T TCAGTTGGATATGCCTTTGATACCAAGAAAC 2120 29 96.6 31 ............................T GTTTCAAGGTCTCGGATAATTCCACATTCAT 2060 29 100.0 31 ............................. TATACATCGTTATTGCATTCTGCATATCCCA 2000 29 100.0 31 ............................. TTAAGAGAGGCTTGTTTAGATCAATACTTGC 1940 29 100.0 31 ............................. TAACAGGTCAAGTTACTGTTGACCCGGTAAA 1880 29 100.0 31 ............................. TAACCAAAATGAGAATAAAAAATTCTTTAAA 1820 29 100.0 31 ............................. GTCTTTGCCAAGTATGTTAAAGACCCAGCAC 1760 29 96.6 31 ............................C TATTTATTTAAAAACATTAAACGATTTAATT 1700 29 100.0 31 ............................. ACTGTAGTGGGTCATAAGGAGATTTAGTTAG 1640 29 96.6 31 ............................C AACATATGGAATTGCAGCAACCGATGCATAA 1580 29 96.6 31 ............................T AGTTCATCAAATGAAACTAACGCTTCCCATT 1520 29 100.0 31 ............................. CTCAGGCAATTGTTGGGAAAAGTCGATTTCT 1460 29 96.6 31 ............................T CTCCCCCCTCCTCGATCGGCTGTGAAAGTAC 1400 29 96.6 31 ............................T TTAAATCGTCATATTAAGGCGCAGTTCCGAA 1340 29 100.0 32 ............................. AAGATCTGACCAGCTAAAACATTCTGGTTATC 1279 29 96.6 31 ............................T AGAAGCAGAAAATATCCAACTCATTGCTACT 1219 29 100.0 31 ............................. CATGGGAGCTTTCATTCATATATGTCATTAG 1159 29 100.0 31 ............................. CGTCCACGGTAGCGGCGCCAAGGCTGCCAAT 1099 29 96.6 31 ............................T GTTTTGCTAATTTATCAATATCGATTTTCAC 1039 29 89.7 31 ...AC.......................G GTATTAGTGCGAATTGGCTTTTAGCCCACGC 979 29 89.7 31 ....C.......G...............T TAAATGCTCAACTACTTCTGTAGCTAATGGA 919 29 86.2 31 ...GC........C..............T CTCAACTCATTGATTTTTTCTTCTCTTGCCA 859 29 93.1 31 ...GC........................ TTTTTATTCCAAGGGCTTTTGCTTCTTGTGA 799 29 86.2 31 ...GC......T................T TCAAATGATTTAATGAGCTTGTAGCCATTTT 739 29 86.2 31 A..GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATAT 679 29 82.8 30 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTT 620 29 75.9 31 CG..G.......CC......C.......T TTATAACCACCAGTTAAAGTATTGACTAAAA C [615] 559 29 75.9 31 ...GC.G...A..C.AT............ CAATCGGGGACGTGGTCAAAAAGATTATCAG 499 29 93.1 31 ....A.......................G TGTTGATGTTGTTGTTCAGATCGTTTTTGGT 439 29 79.3 31 ...GC....T..TC..............G ACATGCGAGCTTTCATTTAAATGTGTCATCA 379 29 93.1 31 ....G........C............... TTAAAGCATTTTCATATGAGCCTTCCTCATT 319 29 82.8 31 ....A......TCC..............T TCGGATCAGTCCAGTCATCATTCTCGTCAAT 259 29 86.2 31 T..G........G...............T ATTATTGCGCGACAGAACGTATCAATTAATG 199 29 89.7 30 ...GC.......................C AAGCTGATGCTTCCTTATGGTTACAGTCAG 140 29 82.8 0 .G..G...................AT..T | C [135] ========== ====== ====== ====== ============================= ================================ ================== 47 29 93.9 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACCCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCTTACCTATTTTACACGGTAAAACACGTCGTGGAGGTCTAGTCTTCGACCTCGCTGATCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTTCGAATGCAACTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGATATATGTAGTAAAATCAAATAAAATCATATATTTAATCTAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAGAAAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATTTTGGTGATGGCGTCAATTGAACAAATATAATAATATACTGATTTATCTTAATTAA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [57-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 7991-9512 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMHQ01000062.1 Acinetobacter baumannii AB_2008-23-01-01-7 AB_2008-23-01-01-7_63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7991 28 100.0 32 ............................ TAACGTGGTGTGAGCCGAGAACCTGCAAGCCA 8051 28 100.0 32 ............................ TTTTGATGAGCAGGTATTTACACAATATAAAT 8111 28 100.0 32 ............................ TGATCAAGAATGATATGTACTAGCTCACTATC 8171 28 100.0 32 ............................ TTCGAGTCATAATTATAGTAAAAAGTCATCTT 8231 28 100.0 32 ............................ TACATAAAAATGCGGACCCAACGATAAGGATT 8291 28 100.0 32 ............................ ATTAATCGAGGAAAAAAAACATGAATGTTAAT 8351 28 100.0 32 ............................ ATCACTTAACCCATCATCAATAAGTTGGCCTT 8411 28 100.0 32 ............................ AGTCACCATTGTTCGAAGCTGTTGGGTCATTA 8471 28 100.0 32 ............................ TTGTTGCATCATTTGCGACTCATGACTATTTG 8531 28 100.0 32 ............................ AAATACAAAGTTAGGTATTGGTACTGGTGAAA 8591 28 100.0 32 ............................ AATATCCACCAATGATTTTGGTAAAGATAGAG 8651 28 100.0 32 ............................ AGACACATACGTAATGGTGTCAATATCGTATA 8711 28 100.0 32 ............................ TGCCCCAGCGAGCAAACGCCTTAAAAATCCTG 8771 28 100.0 32 ............................ GAGATTTTTGTGCGCTTATAGAACATGAGCTT 8831 28 100.0 32 ............................ GTAGGGATAGTGAGATTGTAGACCTTACAATG 8891 28 100.0 32 ............................ CCGCAGATTTACGGATGCCTGTAACTGTCATG 8951 28 96.4 32 ...A........................ TATCATGAACATTGTTCCTTGACCCACGGGCA 9011 28 92.9 32 ...A.....T.................. ATTCGATAGACTGATTCTATAAGCTTATTTGC 9071 28 100.0 32 ............................ TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 9131 28 82.1 27 ....C......TCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 9186 28 92.9 32 ....C....T.................. AAACAACGAGCCTTGTCGCGGGTCGCCCATGT 9246 28 96.4 32 ...A........................ CAAATCAAAAGTGCAGTTGCTGCCTCAATAAC 9306 28 96.4 32 ...A........................ TCTTCATCTGTTACATATGAAGCAAGGATCTT 9366 28 92.9 32 ...A.......T................ GTCAAACGACAGGGCTATAAACACTTAATCTT 9426 28 96.4 31 ...A........................ ACATTCAAAGAGGCTCATCGAATCCAATCGA 9485 27 78.6 0 A..T........TC........C.-... | A [9489] ========== ====== ====== ====== ============================ ================================ ================== 26 28 97.1 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCCTCATTTAATAAAGTTCGAGCACTAAGATAGGGTAAATCAAGTGCTTGCTGTTTACTTAAACGAATCCCGCCTTTTTCAATATTGGAGTTAATCGTCTTTAAACTAAAGTGTACTGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : ATTTCTCTTTCGAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTGTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTAGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTAGGAGCAAAGCATAAATTTGCAAACGATGGTGCATATCCAGTTGCATCGACCAAAAAACAACAAAAACTACTAATGCTAGATGAATGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGGGACATGCATGATATCGGTAAGGCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //