Array 1 2072-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLRF01000081.1 Streptococcus iniae strain QMA0187 NODE_69_length_2126_cov_108.593_ID_9360, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2071 36 100.0 30 .................................... CTTCTTACTGCCTTGATACGGAAGTCCAAT 2005 36 100.0 30 .................................... ATCTCTTTTCGATGACTGAAAAATAATACA 1939 36 100.0 30 .................................... GTCGTCTTTAATCTCCCAATTATCTTCTTT 1873 36 100.0 30 .................................... CGATAAATGGTTAGAGTGGCTAGAAGAATT 1807 36 100.0 30 .................................... CTAGTTTAAGAGGGCTTATCGGCGGCGGTA 1741 36 100.0 30 .................................... GCCTATCCCTTTAAAGACATTCCCTAGCAT 1675 36 100.0 30 .................................... CAAGTAAACAAAATGAAATACAGCAAAACT 1609 36 100.0 30 .................................... ATGTGTCTCCGACTATTGTATAGCCTTGCT 1543 36 100.0 30 .................................... CCAAAAACAACTCAAGCCATCACCCCTACT 1477 36 100.0 30 .................................... CGATCAAGTTAAGGAAACGTTTAATCGTAA 1411 36 100.0 30 .................................... AGGTGCAGATATTTTGGTTTGTTAATGTTA 1345 36 100.0 30 .................................... AAAGGACCGATCGTATCAGACGGCGACCGT 1279 36 100.0 30 .................................... TAGATGATGACAGAATGATGTTGTGGTATA 1213 36 100.0 30 .................................... TTAATGGGTACTAATACATTTACTGGTGGT 1147 36 100.0 30 .................................... TGTTGATGTATCTGTTGTACTGTCAGGTGC 1081 36 100.0 31 .................................... TTGATTTATTTTCAGATGCCCACTTCCAAAG 1014 36 100.0 30 .................................... AAACATTGCTCAGAAGAATGCAGAACAGCA 948 36 100.0 30 .................................... TTCGTTTGGCATTAAGCTAGCAAATGACGT 882 36 100.0 30 .................................... AACGACTGTCAAGCAAGGTTCGGCTAAACT 816 36 100.0 30 .................................... AATTGCTTCAAGTCTAAGTTCTTTCCATTC 750 36 100.0 30 .................................... ATCGATATATATGAGCAAAGGCCTAACGAT 684 36 100.0 29 .................................... CACAATGTTTTACCTAAAGTATCTGGTAT 619 36 100.0 30 .................................... TTCTAAAATACTAACCATCTCATCTTCCTT 553 36 100.0 30 .................................... TATGACTAAAAAAGATGTCGACAACGCAGT 487 36 100.0 30 .................................... TGACAATCAATTTAAAACAACGGGTACAGT 421 36 100.0 30 .................................... TCCTGACAGGTATTTTATGGCAGTTCCTGT 355 36 100.0 30 .................................... AGAGTTCCACGCAGATATGATCTCAATGGT 289 36 100.0 30 .................................... CGCATTCAACGAGTTAGAAAGGAGCATAAT 223 36 100.0 30 .................................... TGAGAAGCGCAGGTGCATCTGATAATGGTT 157 36 100.0 30 .................................... AAATAGTTTAATACTACATGCAAAAAGTCA 91 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 100.0 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : GTGTTATTTTGAATGGTCCCAAAACACGGAATCCAGATAAATCACAATATCCTT # Right flank : CTTATGGCAAGTCATATCAGCATCATTAAATGTTTTAGAGCTGTGTTATTTTGAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 720-1481 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLRF01000034.1 Streptococcus iniae strain QMA0187 NODE_77_length_1500_cov_83.5765_ID_6180, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 720 36 100.0 30 .................................... TCAACAAAGAGTTTAGCGAATTAAACCATG 786 36 100.0 30 .................................... CGCACAATGTTCATGAATACCAGAATTATT 852 36 100.0 30 .................................... GTGCATTTTGCAAAAAGAAAGCCACGATGT 918 36 100.0 30 .................................... AGAATTTTTTCTCTAATATCAGGCATTGCG 984 36 100.0 30 .................................... AGGTCGTAACATAATGCATACATCAACACT 1050 36 100.0 30 .................................... AGTGTTGATAATGTTTTATATAGTTTCTTA 1116 36 100.0 30 .................................... TATTGTCTCATTTGGTTTTACAGTTATACT 1182 36 100.0 30 .................................... AAGCTGACAAAGTGGCTACAACTGGCAATC 1248 36 100.0 30 .................................... ATGCAATAACGATTGAAAGGAAACATGTGA 1314 36 100.0 30 .................................... GTTTGATTTTAAAGGTGGTGTTGGTTGTTT 1380 36 100.0 30 .................................... TTGAAAATGCGAAGCGGTATAACATTCCAC 1446 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATACGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTAAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG # Right flank : TCGATTGGAACAGGTTTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 20-582 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLRF01000035.1 Streptococcus iniae strain QMA0187 NODE_17_length_38386_cov_93.7843_ID_6945, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 .................................... GGAGCGAACATACTCAGCTAGTGCTTATTT 86 36 100.0 30 .................................... ACTGCTATCGATAATACTCACAGACGTGCT 152 36 100.0 30 .................................... ACGTTGGTCAAATTGAGCAGAGACAAATAT 218 36 100.0 30 .................................... GTTTTAGCAGACAAGATAGGTATTTATACT 284 36 100.0 29 .................................... CTCTTTGTTGCGGTTAAATACGGACAAGA 349 36 100.0 30 .................................... CCGTAAATCTAAAAAAATACACGTCATTAT 415 36 100.0 30 .................................... TTAGTATTAAATATAATATCAACACCTTTA 481 36 100.0 30 .................................... TACAACAGTACCTATAAGTGTGGCTACACC 547 36 75.0 0 ................T.....TG..T.T.TTT..G | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 97.2 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : AAAAAATACACGTCATTATG # Right flank : GGCAATATTTCCCATTTGAATAACTTACATATTCGGAAACCGCTTTCAAAAATAGTTTTTTTATGCTATACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGGTGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : AGTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //