Array 1 44087-43328 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAAXKY010000048.1 Pseudonocardia xinjiangensis strain JCM 11839 NODE_48_length_45392_cov_15.115255, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     44086	    29	  96.6	    32	.........................C...	ACCTCGTCGGTGTGGGCGGCTCTGTCGGTGAT	
     44025	    29	 100.0	    32	.............................	CTCGGGCCGGCGCTCGTGTCGATCCTGCAGAT	
     43964	    29	 100.0	    32	.............................	GGAGGCGGCGATACGGTCCCGGTAGTCGATGA	
     43903	    28	  96.6	    32	.................-...........	GGGGCGATGACCATGGCTGCGTCCGGGTCGTC	
     43843	    29	  96.6	    32	..........A..................	GCCTCCGTGGCGCTCTCGGCCAGCGGGACCCT	
     43782	    29	 100.0	    32	.............................	CAGTCGCTCGCTCATCACGTCCTCGGTAGTGC	
     43721	    29	  96.6	    32	............................A	AGTCCCAAAGATCGCGGCGGCACCAGCGGCGA	
     43660	    29	 100.0	    32	.............................	GTGCGGACAAGAATCACGAGCGGGGTCAGGCG	
     43599	    29	  96.6	    32	...T.........................	ACCGGCCCCCAGCACGGCATGGTCACCGGCGG	
     43538	    29	  96.6	    32	............................T	CGGCCCCAGGACGAGAGCAGCGTCCCCGTCAG	
     43477	    29	 100.0	    32	.............................	CGGCTCCGGGGGTGTCGTAGCTGTACTTCCCG	
     43416	    29	 100.0	    31	.............................	GCGGTGTCTTCACCGGGAACATCGATCCTAG 	
     43356	    29	  93.1	     0	..................C........T.	|                               	
==========	======	======	======	=============================	================================	==================
        13	    29	  97.9	    32	GTGCGCCCCGCGGACGCGGGGGTGGTCCC	                                	       

# Left flank :   GCGGGTCGGGGCACGTGGCACCAAATCATTTCACCGTCTCGCACGGCGGCGGTAAGGTCGGTAGAGTCAATCGACGTGGCACTGGTCGCTGGGGCCGCAGTCGCCGAGGAAGGCGTCACGCCGCCCCGTCGGGTCATGACGCCGCTCTCACCCCTGTTTACTGGAGGTCTCCACGGGAGTCTTCCTCGGCAAAGCGTCAGCCTGCGCCGGCGGCTGCTCTGGATCCACACCGTGGAATAGCCAAAGCAGACGAGTGATCATCGTCTACGCGGCCGACACCGAAAAGGCCTCTATTCCAAGATCCACCACCACGGGTGGACATCCGTCGAGGTCGAAGCCTCGCCCTTCGTGCTCCGACCCAACAGCAACAACCTCCGCCCCGGCAGAACATCCGGGCCAACCCAGGGCTGGAGCAGCGCAAACCGCCGACAGCGGTTCCGAGGGGCGGTAAGTCGATCTAAATTCGCTCAACGCTCGCGAGAACCAGCAGCTCAACAAGT
# Right flank :  AAGTCCTGGTCCTGCCCGTTGATGCAGATACGCCAGCCGTCATCACCGGTCCGGCGCCAGTCGCTGAAGCTGCGGGTCGTCACGAGCAGGAAACTGCCGTTGCTCCCGGCGAGCGCGGTCACCACGGTGAGCCATCCACGGCGATGTGCGACCTCGTGATAATGCAGGCCCAACGGCTCCGCGCCGGTGTGGCGGCAGATCTCGACGAGCAGCCCACGCGCAGCGTGGTGCGCGCCGAGCATGCCCACACTGCCCCGAAGCGGGATGTTCGATCCGCTCGATCTGCCCAGCGCCGTCCTCCTCAGCCGGATCAACCTCCGGGTCGACCAGGACCCGCACCAGCGCCTGGCCGGCCTCGATCGCACCCAAGGTGCGACGCTTCCCCTTCCGCACCACCAAAGCCCCATCGGCGCGGCGGCGGACCTGGATCGGCTCTCGGACACCCCGGTCACGGATCGACCGCACGAACTCCCGGTCAAGGACCACAGTGCCGCGGACGT

# Questionable array : NO	 Score: 5.93
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGCGCCCCGCGGACGCGGGGGTGGTCCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [3,1] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 90% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.30,-13.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [2-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.78,5.14   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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