Array 1 1215515-1214186 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJTX01000015.1 Listeria monocytogenes strain CFSAN002283 PROKKA_contig000015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1215514 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 1215448 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 1215383 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 1215319 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 1215253 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC TCA [1215239] 1215185 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 1215120 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 1215055 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 1214989 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 1214925 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 1214860 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 1214795 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 1214730 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 1214667 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 1214604 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 1214538 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 1214475 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 1214410 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 1214344 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 1214279 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 1214215 29 93.1 0 .......................C....C | A [1214190] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 8105-5225 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJTX01000019.1 Listeria monocytogenes strain CFSAN002283 PROKKA_contig000019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8104 36 100.0 31 .................................... CAAATATATAACAAACCTACAATAAGATATA 8037 36 100.0 30 .................................... GTAACACGAAAGGACTTGTCTACAGCTCTG 7971 36 100.0 30 .................................... TAATGACAAGTTATTATTATAGTAGAAGTT 7905 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 7839 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 7773 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7707 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7641 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7575 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7509 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7443 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 7377 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7311 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 7245 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 7179 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 7113 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 7046 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 6980 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 6914 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 6848 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 6782 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 6716 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 6650 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 6584 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 6518 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 6452 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 6386 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 6320 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 6254 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 6188 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 6122 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 6056 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 5990 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 5924 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5858 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5792 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 5726 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5660 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 5594 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 5528 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5461 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 5395 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5329 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5263 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5228,5231,5236] ========== ====== ====== ====== ==================================== =============================== ================== 44 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //