Array 1 567226-567864 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUQO01000001.1 Escherichia coli strain AFG_SD05_1510_Eco_095 EC-BIM095-S21-VE-AFG-2015-033-PK_S18_74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 567226 29 100.0 32 ............................. GCTAATTTACGTAATTTACGTGCTATTGCACT 567287 29 100.0 32 ............................. GCTGATGGTCTGGGAGTGTCCATCGGGCAACT 567348 29 100.0 32 ............................. GAAGTAGGCCTGACAGTGATTGAACGCATACT 567409 29 100.0 32 ............................. TGGGTCATGCCGGTGATCGCCTGCCCGTCGTG 567470 29 100.0 32 ............................. GCGGCGCAGGGATTCGTACAGTCAAAAACGCC 567531 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC 567592 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT 567653 29 100.0 32 ............................. TCAACGCGCTCAGACGTTGCGTGAGTGAACCA 567714 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC 567775 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT 567836 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAACATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 593565-594936 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUQO01000001.1 Escherichia coli strain AFG_SD05_1510_Eco_095 EC-BIM095-S21-VE-AFG-2015-033-PK_S18_74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 593565 29 96.6 32 ............................A ATACCCAGCGCAATTTCGAGCGCGAGAGAGTT 593626 29 100.0 32 ............................. CCCCAGCGCGCTAAGAACTTCGTAAATATTGA 593687 29 100.0 32 ............................. CCGGCGAAGTCTTTCCCTCTGTCATCGTGTTG 593748 29 100.0 32 ............................. CTTTTCCGAGCTCACGAGTTACCGGCTATCGC 593809 29 100.0 32 ............................. TTGACCCATGCGCTAAGGTCAAAATGACCCAA 593870 29 100.0 32 ............................. CACTGTTATTCAGAGGGGTAAATAAAAAATAT 593931 29 100.0 32 ............................. GGAATTATATCTTTTTGCTTATCTGAAAGAAT 593992 29 100.0 32 ............................. CCGCCGGGGATTTAATGATTTTGGGGGGCAAC 594053 29 100.0 32 ............................. GCGCGAGTGAGTTAATTCCTCAGACTATCGAC 594114 29 100.0 32 ............................. ATTTGCTCGCGATGCGCCTGCAGCTGGAACCC 594175 29 100.0 32 ............................. GGGCTAAAAGACGCGTCGCCGCCAGGCGGCTT 594236 29 100.0 33 ............................. TGGATTAATCCGCGGCTGGCGATATCTCGCAGC 594298 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA 594359 29 100.0 32 ............................. TCAGCGTAATATCACCCGTCAGCGCCTTATTA 594420 29 100.0 32 ............................. CCGCACCCCGCGCGGTTGGTCTGGATGACAGT 594481 29 100.0 32 ............................. TCGTTTAGTGTGGAATTTGGCGACGCGGAGCG 594542 29 100.0 32 ............................. GTTAAATATTGTTCACCATCATGGATCAGGAA 594603 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 594664 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 594725 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 594786 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 594847 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 594908 28 72.4 0 .AA........C..T....A..-.C...C | T [594927] ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //