Array 1 75357-71705 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPLO010000012.1 Bacteroides sp. 1001302B_160321_D4 NODE_12_length_119254_cov_8.30597, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 75356 45 87.2 30 ...A.-...CA....T..-............................ TTGAACATTGAGGCTACGCAGTACAGGACG A [75347] 75280 47 100.0 30 ............................................... CCGTCAGTGGATCAGAGACGACATGGACAA 75203 47 100.0 30 ............................................... ATAAGGCTGTTGAGGAGCAGCAGAAGCGGC 75126 47 100.0 30 ............................................... AAAAGACGGTGTATTACCTGAATATAATAT 75049 47 100.0 30 ............................................... TCATCCACTTTAATAAATGGACGGGATTGC 74972 47 100.0 30 ............................................... ATGTACCATATTCCGCCCGTACATCGTAGC 74895 47 100.0 30 ............................................... CGGAACCGGAAGTTCCCGAAGAAGTAGCAC 74818 47 100.0 29 ............................................... GAACCGAGGGTCTGATATTCCCGGAATAC 74742 47 100.0 30 ............................................... GACATCCCACCGTCCGGTACATCGAACGTC 74665 47 100.0 29 ............................................... GTTTTCAACGATAGGGCTGGCTTCGATGT 74589 47 100.0 30 ............................................... AGGAGACATCATTGATCTGAATTTAATCAA 74512 47 100.0 30 ............................................... AATCGAATGAATAACGAGTTTAATGCTAGA 74435 47 100.0 30 ............................................... TACGATTAGCATTAGAACGAATACCATAAT 74358 47 100.0 30 ............................................... CATCTGCGCCCAAAGGTCTATCAAGCCGTT 74281 47 100.0 30 ............................................... ACGTTCACTTTGAAAAAGTAGATTAACCAT 74204 47 100.0 30 ............................................... CGTTTAGTCTATCCTTCGCATACAGGCGGT 74127 47 100.0 30 ............................................... TAATTTCATTCAAAGACGTTTCCAGTGCGC 74050 47 100.0 30 ............................................... ATCATGACCGTTAGAACACAGGCAGCCGCT 73973 47 100.0 30 ............................................... AACGGAATCCTTGAAACCATCGTGAAATTC 73896 47 100.0 29 ............................................... GTTTTCAACGATAGGACTAGCTTCAATAT 73820 47 100.0 30 ............................................... GCCATAATTTTTTGATTTTATTGTTCCGTA 73743 47 100.0 29 ............................................... AATTCGATAATTCGATAATTTCGATTCGA 73667 47 100.0 29 ............................................... GAAACTGTGTATACAGGAGATTACATTGA 73591 47 100.0 29 ............................................... TGGGAGAAACCTCTACATATAACGGAAGT 73515 47 100.0 29 ............................................... AACGAAACACATGAACTTGTATGCGTAGT 73439 47 100.0 30 ............................................... TAACAAGCATCGACATCACAGCCAATGACG 73362 47 100.0 30 ............................................... CTTTCATATTAGGAAGCCATTTATTATAAA 73285 47 100.0 29 ............................................... TCCAATAAATTCAGGCATAAGAAGTTCAT 73209 47 100.0 30 ............................................... GAATTATCTGGCTGAACGTAAACGCATGAG 73132 47 100.0 30 ............................................... GCGAGACCCAAACAGTTATGCGCTCACTGC 73055 47 100.0 30 ............................................... CAAGGCTGATCTATTTATAGTCCCTTTAAT 72978 47 100.0 30 ............................................... GCAAAGACTGGGAAAGACGATCACCGATTA 72901 47 100.0 29 ............................................... TTAGTTTGATGTTTAGCACTTCATCCTCT 72825 47 100.0 30 ............................................... TTTGTCGTGTCGCTTGTCTTAACTCTTATC 72748 47 100.0 30 ............................................... AGAACCTCGACACGCTTACACCCCTGACGA 72671 47 100.0 30 ............................................... TGCAAACGGCGGTTTTACTACGGTAACTAT 72594 47 100.0 30 ............................................... GCCGTACCTTTGTAACATCGAAAGAGAAAT 72517 47 100.0 29 ............................................... GCGGTAGCGTGTTAATAGCGTACGGTGAA 72441 47 100.0 29 ............................................... ACCAAGCAGCAACATTAAACGCGGTGGCA 72365 47 100.0 30 ............................................... AAACGGACTATTACAGATGTAAACGCGCCC 72288 47 100.0 29 ............................................... TTTGTTTCGGTTTTCCGATCCGAAAGAAT 72212 47 100.0 30 ............................................... CTTCACCGTGTAGATCAGATCGGACTTGTT 72135 47 100.0 30 ............................................... AATTCAGCACTAGTACCAATCATTGTACTA 72058 47 100.0 30 ............................................... GACGAGAAGGAGCTGAATCAGGTTAGAAGT 71981 47 100.0 29 ............................................... TAAGTCGATAGAATTAAATGAATAGATGT 71905 47 100.0 30 ............................................... TAAATATATCTTAGAACTAGTTCTCCAAGT 71828 47 100.0 30 ............................................... TGTAGCCTGCATAACAGCCGGAGAAGCAGC 71751 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 48 47 99.7 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : GTTCACAAGTTACATAGGTGGGGATTCCATAGTTGGCGATCTCCTGCATAGCAGCCGCACGTTCTTGAGGTACCAGAGTATTCCGCATTATATCCGGATAAAAACGGTTCGTCTCAATGGTCGTACAAAGAACGGATTTCTTCATAACCGGATGCTCCAGATATTTCAGAAAACGGGCGGGATTCTTTGACTGGAAGAGATACTTGTTATCAAAACCGTCACAATAGTCCAGTATCTGCTCAATCCATTCTGACGGGACATTAGCCGCCCATTCATCCGTACTGCTGCCTACAAAGATAAAGTTGCCTTCACCCAGATTCACTTTCAGTTCCTTCAGCTCCAGACGCAAGGGAGGCAGGAGAAGTTTACGTCTCATAAAACAATATGAACAAGAGTGTTCACATTCGCCTTTCATCGGGTTATATGTATGTGAAACGAAGGCATACATGTTCCCGGTACTTTTATTCAGTGCCATATATCATTATGCTTTTCACATCCAT # Right flank : ATATTTTATATAACAAAATGATTTCCAACAAGTTAAAAAGAAAATTAGAAAAGAAAAAAAGTCTGTTTCCAGCACAAAATCTCGCATTAATGCGAGATTTTGTTTTTTAAAATAACTCTAATTGTTGTCCAGGCGTATTAACATTCTGCATTTTCTTTCCATAAAAAAGTTCTATATTACCAAACTGTTTATCGGTAATACACATGATTCCGACATGTCCAAACTCCGGGAGGAAAGATTTAACTCTTTTTATATGTACTGTAGCATTTTCACTACTAGCACAGTGACGCACATAAATGGAAAATTGAAACATAGTAAAACCATCCTTTTGCAGATTCTTTCTAAAGTCCGCATAAGCCTTCTTTTCTTTCTTCGTCTCAGTCGGCAAATCAAAAAAAACAAGTACCCACATAATACGATATTCACTAAAGCGATCCATTATCGTTCAGGATAAGCTATTCGACGAATTTCTCCATTGAAACATTTGTAAAGTGAGGAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 30526-31925 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPLO010000019.1 Bacteroides sp. 1001302B_160321_D4 NODE_19_length_87208_cov_7.2495, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 30526 36 100.0 32 .................................... TTCTTGAAGATAACGTGCAGCACTGACAACGG 30594 36 100.0 38 .................................... TAAACGCCAACATTTCCTGCCTCATACGTATCTAGTGT 30668 36 100.0 34 .................................... ACCTCGGATAACACCACAGGCAAAGAAGAACTTA 30738 36 100.0 35 .................................... CTTACTTCTTGATATATTGCCATGTTCACCTCACA 30809 36 100.0 36 .................................... ATCAGGTATCTTCTCAACCAAATTAGCAACATGGCT 30881 36 100.0 36 .................................... TTCATAATTATGTTGTCTTAAATGATTAAATAAAAA 30953 36 100.0 36 .................................... TGTTCAGGAAATTGGAATCACTGTTGCTCTGTGCAA 31025 36 100.0 37 .................................... ACGGTCTTGCCGTCTCCAGTGGTGAATATTTCACCTA 31098 36 100.0 33 .................................... TACGTAACTGGTTAGGCTGCACCCTCTGCATCA 31167 36 100.0 36 .................................... CGACTTTTTCCATTGCATCTTTTTATTGAATTTAAA 31239 36 100.0 39 .................................... CACATTAACATTTGCTCGTTCATGTCAGCCGACACCCGG 31314 36 100.0 36 .................................... CTCGCCGCTATTGTTTCTATATACTTCCATGATCTT 31386 36 100.0 35 .................................... TTCTTAGCACCTGCGTTAAATAACGCAATTAACGT 31457 36 100.0 36 .................................... GATATTAGCGTGTTTGCTTGTCCTCCTAGCCATTTT 31529 36 100.0 35 .................................... TCTGCTATTGGTATATATACATTCATCATTTAATG 31600 36 100.0 35 .................................... ATCAAAGAAATTTTTATTTTCTTTGTGTGTGCAAG 31671 36 100.0 38 .................................... TTGCGCACCATATCGAGCGTACAACCTTCGGGCAATGT 31745 36 94.4 36 ..................C................T GCAACATACTTGCTAAAATCAATCATAATTGTATAG A [31755] 31818 36 97.2 33 ................................T... ATTGCATTGTTAATCTCTGACAAAGAAACAGCT A [31828] 31888 35 80.6 0 T.........G...............-CC....A.T | T,CC [31896,31911] ========== ====== ====== ====== ==================================== ======================================= ================== 20 36 98.6 36 CTCATAGAGTACTTCCAGTATAATAAGGATTAAGAC # Left flank : GTTTAGACGAACGTATCAAACGGGTGATAGGCTTACTAAATGTTCCTAAAAAAAAATCATTGAATATGTTATTTTTTGTCATGTACGATATAGAAAGTAATAAAGTACGTAATCAAGTTGCTAAGTACTTGTTGAGGAAAGGATGTTTTCGTGTTCAACGTTCTATTTTCTTGGCAGATTTGAATAATCAGGACTATGAGCAGATTCGTTCAGATTTATCAGAAGTGCAGGCTTGTTATGATAATCATGATAGCATTATGATCGTACCGATATCTACAGACTTTCTTCGTTCTATGAAGATTATTGGGAAGTCAATAGATATTGATATTATAATGAATTCTAAGAATACACTGTTTTTTTAGAATGTTTATGTTTTCGTTCTTTGAAATATTGTTTATCTTTGCAGGCTTTTAAAAAGAGAACTTTTTTCTTTTTTTAGGGTGACTCTTTTATGCTTTCTGTTGTTTTCTGTTGAAAATGACGTGATTATAATGATAACT # Right flank : TCCGCGACTTAATCTAATAAAACAACCTCTTTGGGCGGCATTTTTTTGCTGTAATGGATAATTTGTCAGTTTGATGACCGACCTTATATTATATAGTGAACAATTGGTTGATTTCTGCCACCAATAAAAAACGGTAAACCATTTGTGAGACGAATTACAACGTGTTTTTGTTTTGTATACGAAACAAAAATACTATATTTGTATTTTATATATAGAACAATACCAGATATGGACAAGGAACAAATAAAGCAGATAATTGGTGAAAATCAAGAGTTTGTCAAAGATATAACATTTATGGAACGTCCTTTTACTTTTGAGGATGCAGGTAATTATGTGTTTTTAGGTATTCGCCGGGCTGGAAAATCCTATTTGATGTATCAGCGGATACACCAACTTCTGAAAAAAGGGCATAAGATAGAAGAAATACTTTATATCAATTTTGAGGACGAGCGTTTTATCGGCTTGAAATCAGAAGAGTTGAACGATATAAAATTGGCATA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAGAGTACTTCCAGTATAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //