Array 1 2976488-2981448 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWIJ010000002.1 Melaminivora jejuensis strain KCTC 32230 KCTC-32230_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2976488 37 100.0 33 ..................................... AGGTGCGCGTCCATCGCCTGGCGCATCAGCCGC 2976558 37 97.3 33 T.................................... AACGCCTACGTGCGCAGCCGGCGCGCCACCGCG 2976628 37 97.3 34 C.................................... GCGCTCGCGCTCCTGCCGCTCTTCGGCGCGCTTG 2976699 37 100.0 34 ..................................... AGACGCAAGCAAAAAGATCAAACAAGCCCTGGAC 2976770 37 97.3 34 A.................................... ACGCCAGTGCGCCAGCGAATGCGGATCGAGGTCT 2976841 37 97.3 33 T.................................... GGCTCAGGGATGGCCGATGTGTCGCGCTTGGCA 2976911 37 97.3 33 A.................................... TATGCCGGGATGATCTGGGGCGAGGTGGCGCAG 2976981 37 97.3 33 T.................................... CGAATTTCACCGTACCAACCGGGAGCCGACTGT 2977051 37 97.3 34 C.................................... AGCGGCTCCAGCTTGGTCTTGGTGTAAGTCCACT 2977122 37 100.0 33 ..................................... AGGCCCTTGATGCACACGGCCAGGACAGCCGGC 2977192 37 100.0 34 ..................................... CATGTGCTCGATGTGCGTCTGTAGGGCGTCGGCG 2977263 37 97.3 34 T.................................... ACTGGTCGGCTTGTCGGACTTGATCGACTCTGCG 2977334 37 97.3 32 C.................................... ATGGCGAACGGCGTGAACTTCATGTCCGCACC 2977403 37 100.0 32 ..................................... ATGTCCGCACCGATGATGGCGACCTTCCCGGA 2977472 37 97.3 33 C.................................... AGTCGGTCTTGCAAAAAGGGCCGCCCGAAGGCA 2977542 37 100.0 32 ..................................... GTCTGGAACATGCTCACCACCTGAGCAGCGGT 2977611 37 97.3 35 C.................................... ATGACCTTGTCCATGCTCATCGTCATGGCTGATGC 2977683 37 100.0 34 ..................................... CAATCCTTGAATGGGATGGATGGCGCCGAAGCGC 2977754 37 97.3 33 A.................................... CTCGATGGCAAGGGCGGCTGTTTCGATCTCGCC 2977824 37 97.3 33 A.................................... ATGCCCCACTGCATCGACTGCAGGCACACCGCG 2977894 37 97.3 34 A.................................... GCGAATCTCGAAGCCGAACTGGCGCAGCAGTTGG 2977965 37 97.3 34 C.................................... CAGATGGTACCCATCATGCCCAGCACGCCCACAA 2978036 37 97.3 33 C.................................... TCATGCGTGCCACCTGGCACAACGCCCAGCAGG 2978106 37 100.0 33 ..................................... TCCGTTACGGAAAACCACATATCCACCCTCTGG 2978176 37 97.3 33 C.................................... CGCATCACCAAGGACGGCGCCGCGCCGGTGGCG 2978246 37 97.3 33 C.................................... AACCTGGACGGCTGGTTTAACGCAACCGAAGCG 2978316 37 100.0 33 ..................................... CGGCCTTGGGCAGGATCGCAACGATCAACCCCC 2978386 37 100.0 34 ..................................... AGCCCGGTGATGTCCAGGGTGGCGGCATCGACGG 2978457 37 97.3 33 T.................................... AGGAGCCGGATCAGCGTGTGGTGCAGTTCGCGG 2978527 37 100.0 36 ..................................... AAGCGCAGCAACTGGGCCGTTGGCCTGGGCGCCATC 2978600 37 97.3 33 A.................................... AAGGCCATCGTCATCGACAGCATCAGCGAAATC 2978670 37 100.0 33 ..................................... CTCATTGGCGGTTTTTTCCGCCCATGCCTTTGC 2978740 37 97.3 34 C.................................... GTGGAGAAGATCGACACCAGCAACACCGAGCTGT 2978811 37 97.3 33 T.................................... ATCAACCTATGCCCTCCGGGGGCAAACCATCAT 2978881 37 100.0 32 ..................................... CAGCCCTGCAATGCAGCTTGCGCGCGGCCCTT 2978950 37 100.0 34 ..................................... CGGTCGAACTGGCAGGTTGGCCTGGGCGCCATCA 2979021 37 97.3 32 A.................................... CTGAGCGCCTACGACGCTGCCTTGTTCCATGG 2979090 37 97.3 32 C.................................... ATGCACGGCCAGGCGCAGGCGTACATCTCCGG 2979159 37 97.3 33 C.................................... GTTGTCGGGCCAGACTTCGACCACTTCCGTTTC 2979229 37 100.0 33 ..................................... ACTTGAGTAATTCAGTCCCCTATGCACTTCGCC 2979299 37 97.3 33 T.................................... ATCGAATCGGACGTGGAAACCGTGCTGAACGAC 2979369 37 100.0 34 ..................................... AGCAGCCTGCAGGCCAAAGTGGCAGCCGTGGGCG 2979440 37 97.3 35 C.................................... AAGGCCAAGGCTGCCGCTGCCAGCCAAGCGTTGGA 2979512 37 100.0 35 ..................................... ATCTGGCCGGCCACGATGCCGGGGTCGTTGGCGGT 2979584 37 100.0 34 ..................................... GGTACTGGTGGACACGACTTCGGTGCTGCCTGAG 2979655 37 100.0 33 ..................................... AACGCCCGCGCCTACCCGTGGACAGTTGCGCTG 2979725 37 100.0 32 ..................................... GGCTTTTTGCTCGTCGGTCAGGGTGCTGGCCA 2979794 37 100.0 33 ..................................... GGCCTGCTGCGCAACCTCGACCGCGCACCGCTG 2979864 37 97.3 33 C.................................... CCGGACATCAGCGAAGAGACCCGCACCGTGGGC 2979934 37 97.3 32 C.................................... TTGACGCGCACGCGCTGGCGGCGCTCGCCCGA 2980003 37 97.3 33 T.................................... CCGGACATCAGCGAAGAGACCCGCACCGTGGGC 2980073 37 97.3 34 C.................................... CCCGCCGGCATCCAGCAGTCTGCTGGGGCGCAGG 2980144 37 97.3 32 A.................................... CTTGATGGTGTCGTAGCTGGCTTTGGCGTTGT 2980213 37 97.3 34 C.................................... AGCAGCCTGCAGGCCAAAGTGGCAGCCGTGGGCG 2980284 37 97.3 33 C.................................... GGCAATAGTCTCGCCGAAGCGCTGGATGGTGCC 2980354 37 100.0 34 ..................................... AACAGTTCGTTGTTGAGGTCGCTGATGGCCTTGC 2980425 37 100.0 33 ..................................... ATTTTGAGGCGCCCCTATGGCACTTGACGTTGA 2980495 37 97.3 35 A.................................... AGGGCCTGGGCGTGCGCGAAGTTGGCGTTGCCGGC 2980567 37 97.3 33 T.................................... AGCGTCCGCTGCTGCGCTGGCCGCGCTCAAGCT 2980637 37 97.3 33 C.................................... CTGCTGCTGCAGCTGGCTGATCAGGGCATTGGC 2980707 37 100.0 35 ..................................... TTGTAGCGTGGCGGCCCAGGTCTTGGCGGCGTCAC 2980779 37 100.0 33 ..................................... CCCGCGACTGCCTCGGGCAGTGGCGCGACTAGC 2980849 37 97.3 33 T.................................... CAGCCCTGCAATGCAGCTTGCGCGCGGCCCTTG 2980919 37 100.0 34 ..................................... GAAGTCGTTGGTGGTGATGCCGGCGGCGGACAGC 2980990 37 97.3 32 T.................................... ATCGAGCGACTTGATGCCGCGCTCGACCCCAC 2981059 37 97.3 33 T.................................... GCGGTAGGCGCCAACCTGTCGGCGGTGCCGGTG 2981129 37 97.3 34 A.................................... GTGAGCCTGGCCTACAACGTGGGCGCTGGCCGGG 2981200 37 97.3 33 C.................................... GCATGGGTAGGACACACCTTCCATGCTTCGCAT 2981270 37 97.3 33 .....T............................... AAGGTGGTGCAATCCGAGCACGTCGCCCTGGTG 2981340 37 97.3 35 C.................................... GAGCAGCTACAGACCGACCAGCGCCTGCGCTGCCG 2981412 37 73.0 0 ..........C...C...AG.A...TC.A..CA.... | ========== ====== ====== ====== ===================================== ==================================== ================== 71 37 97.9 33 GGTTCGCTCGTCAGAAATGACGGGCGTGGATTGAAAC # Left flank : GCTGGTTTGCTACGACGTCAATACCGAAACCAAGGCCGGTCGCCGCCGCCTGCGCCGCGTCGCCAAAGTGTGCGAGAGCACGGGACAGCGGGTGCAGAAGTCGGTGTTCGAGTGTCAGGTGGATGTGGCGCGGTTCGAAGAACTGGAGCGCCGGCTGCTGGCGGAAATCGATCCTGCGCAGGACTGCCTGCGGATGTATCGCATTCCTGGTACTCGAGGGTTTGAGGTACTGGAGCATGGCACATTCAAGGCAACCGATTTCGATGGGCCGCTTGTGCTTTGAACAACTGCAAGACCTTGCTGAACTGCGTGCTATGGTGGCTGCCGCGAACCCCAAGCGGTGGCCGCCATCGTGGCAGGTTCGCGCTCTCCCCAAGTCTTTGATAACAATGGTTTTTCTTGTTTTTCGACATCCGCCTCGGTCATGTTCCGCAGTATCTGCAGGAGCTTCGCGCGTGGAGGAAGAAAAAGCCTTGAAAAACAAGGAGTTGCCGAGGAAG # Right flank : CGGCACCAATCGATCCCTGACTCAGCCATGAACGGAGGTCAACGTGAAAGGTGTGCTGTGGTGTGTGGCGCTGGTGGGCCTGGGGGTGCCGCTGGCTTTGCTGGGCCTGGCGCTGGAGAGTGAACGCCTGATGGCCCTGGGAGCTGGCGCGGTAGCCACGGTGACGGTGGGCTGGCCGGTACTGCTGCTCATGGGCGAGGTGCCCGCGCGCCGAGGCAGCTGCCGCCGCACGGGCCGGGGCTGCTGATCAGGTCGTCATGCACTGATCAGTGCCAGTTGCTTCAAAAAAAGTAGCTGATACCGCTTGCTACACAAGGCTTTTCAGCCTGTTTCAGGCTATTTCATGCCCCATGGATCGCCGCCGCCACGATGATGCTGATGCCCAGGCACATCGCCGCCACCACCATGCCCAGCGCGCGGTTTTGCTTCTCGACTATCTCGGCCCACAGGTCGTGCGGGGTGATCTTGTCGATCAGCACGAAGCACAGCCAGAAAATGAC # Questionable array : NO Score: 8.64 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCGCTCGTCAGAAATGACGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCATCGCCCGTCAGTAATGGCGGGCGTGGATTGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3032410-3033757 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWIJ010000002.1 Melaminivora jejuensis strain KCTC 32230 KCTC-32230_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3032410 28 100.0 32 ............................ ACGCCGCCGCCACCCAGGAGAACTCTGATGCC 3032470 28 100.0 32 ............................ ACCGATGGCGGCGAGTTCCTGGCCGATCTCGA 3032530 28 100.0 32 ............................ TGCAGGAGCAGACACAGCTGGAGCAGTCTCAG 3032590 28 100.0 32 ............................ AGTTCCTGCAGCGGAATCAAACGCGGAATGAA 3032650 28 100.0 32 ............................ TCACCCCAGGCGAAAGGCTCGGTGAAGGTGAA 3032710 28 100.0 32 ............................ AATGCAATGCCGCTGCATGAATCTATCGATGC 3032770 28 100.0 32 ............................ AGTACGCGGCTGGCCTCTGCGGCATTGGCGCT 3032830 28 100.0 32 ............................ AGAGGGGCATCCGTGGGTGGCGTATATGTCGC 3032890 28 100.0 32 ............................ GACACCAGTCCCAAAGACGCGCAAGACGAGGC 3032950 28 100.0 32 ............................ GCCCAGCAGGCCATCGTCGGCGCATTGGAGTA 3033010 28 100.0 32 ............................ AGCATCAGCACCACCGTGGCCGCCCAGGCAGC 3033070 28 100.0 32 ............................ ATCGGCAGCCATGCGCTCCGCAGCCCGGCGGG 3033130 28 100.0 32 ............................ TTGATGGCTTTTTGCAATTGAGCCAGCGCCCT 3033190 28 100.0 32 ............................ CGGTCAAAGCCTGGGCGCTCCACGTAGTCGCG 3033250 28 100.0 32 ............................ TGTCCTCGGCACACTGCTGGCACGGGTGGCAC 3033310 28 100.0 32 ............................ AGCAGCCGGGCGGGGTAGGTGGTGGGTGCCGT 3033370 28 100.0 32 ............................ TTGCCAATCGAGCCTGCCCGTGGCCAGGTGGT 3033430 28 100.0 32 ............................ GTCAGCATCACCCATGGCCACGTCGAGTGCGT 3033490 28 100.0 32 ............................ GAGAAATGCCCGAGCTGCGGCGCACAGGTTTT 3033550 28 100.0 32 ............................ AATCCGCCATCGTCGGCGTGATGCACGACATC 3033610 28 100.0 32 ............................ GCGCAGGCCCGCGCCGGAAATGCCCAGGCGCT 3033670 28 96.4 32 .......................G.... AGCACGGGCGGAGGCATCAGGTGGCGGTGTTT 3033730 28 92.9 0 ..........C.............A... | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.5 32 GTTTCCTGCCGCATAGGCAGCTCAGAAA # Left flank : TGGCGCTGCAGGCCCTGATGGCACAGCCGTGGCTACAGGGCATGAGTGACCATGTGCGGCTGTCGCCTGCAGCAGATGCACCGCCGGATGCACCACACCGGCTGGTGGTACGCCGCCAGTTCAAGACCAGTGCCGAACGCTTGCGCCGCCGTCGCATGCAGCGCAAGGGTGAGACTGCCGCCCAGGCTGCTGCCGTCATCCCCGACAGCGTGCAGCGCAGACCAGATTTGCCATACGTCCAACTGCGAAGTGCCAGCACGGGTCATCCGTTCTGTCTGTTCCTGGAGCACAAGCCATTGCTTGCCAGCCCTGTGACTGGAGAGTTCAATGCTTATGGATTGGGGCCTCTGGCGAGCATCCCCTGGTTCTGACCCTTTTTTTCTTGGTTGGAAAATTTCATTGTGAATCAATGACTTGCGTGTAGAGGGGAAAATTGGGCCGCAGGGACGAGTAAGTCCTTTTTTCTTTTAAAAACAAGAGCTTGCATCTGTTAAGTTCGC # Right flank : AATCATCAGCGGGCTGCAGGCCGCCCAGAGGCTGTCAAATACCGCCGCAAATACGCCCCCGTATGGCTGGCCGGATTCGCCGCCACCTCCTCGGGCGTCCCTTGCGCCACCACGCGCCCGCCGCCTGCGCCGCCCTGCGGCCCCATGTCGATGACCCAGTCCGCCGTCTTGATGACGTCCAGGTTGTGCTCGATCACGACCAGCGTGTTGCCTGCGTCGCGCAGGCGCGTGAGCACCTGCAAGAGCAGATCGACATCGGCAAAGTGCAGGCCGGTCGTCGGCTCGTCCAGGATGTAGAGCGTGCGCCCGGTATCGCGGCGCGAGAGTTCCTGCGCGAGCTTCACGCGCTGCGCCTCGCCGCCCGACAGCGTGGTGGCGCTCTGGCCCAGGCGGATGTACGACAGGCCGACTTCCAGCAGCGTCTGCAGCTTGCGCGAGATCGTCGGCACGTCCTTGAACAGCAAGTAGGCGTCCTCCACCGTCAGGTCGAGGATCTGCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //