Array 1 4893-3869 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQDS010000088.1 Acidovorax cattleyae strain MAFF 301576 Acat301576-2_contig_88, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 4892 32 100.0 35 ................................ GCGCGCACCACTGGCTGGGCCGGCTCCTCGAACGA 4825 32 100.0 34 ................................ ATCACGGCGCGCAGGAACTTGTCCGGCTCGTCGT 4759 32 100.0 34 ................................ TTCGACTTTGGCGCTGGCGAACTGGATGACGGCA 4693 32 100.0 34 ................................ TCATAGACCATCTTCTGCCGGTCGAGCACCCGAT 4627 32 100.0 35 ................................ AGTTGCGTGCTCATGCTTATCCTTGAGTGCGGGGC 4560 32 100.0 36 ................................ GCGAAGGTGTAGACGATCTCGTGCGTGTCGCCGAAG 4492 32 100.0 35 ................................ GTGGCCAACTCGGTGGCCAACGTGCCAGCCTCCAC 4425 32 100.0 35 ................................ CACTCTGGCGTCTCCACCACATCAGCCGGGCCCAT 4358 32 100.0 33 ................................ CGCCGCAGGGCCAGGGCCTCGCGGTCCTTCCCC 4293 32 100.0 36 ................................ TGCATCTCCTGCACGGCGGGCGGCGCAACGTCGCCC 4225 32 100.0 35 ................................ GTGGAGATAGCCAATGCAATTGACCATGTTCGAAC 4158 32 100.0 35 ................................ CACCATCATTGACATTGCCAAGGCCCTCGACACGA 4091 32 100.0 36 ................................ CGGAATGGCACGTAGATGCGCGGGTGGTCGGCGAAT 4023 32 100.0 34 ................................ AAACATAGGCGCTGATGGCGGCAACGGAATTGGC 3957 32 96.9 25 ............A................... CGGGTGACGCTCGAAGTGCCTGAAC Deletion [3901] 3900 32 75.0 0 .....T..G.CA..A...A.....A......T | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 98.2 34 GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Left flank : GGCCAGCGCGTGCAGTTCTCGGTGTTCGAGATCGAAGTGGATGCCGCCCAGTGGACCGCGCTGAAAGCGCGGCTGCAGCAGACCATCGACCCCGCCCAGGACAGCCTGCGGTTCTACTACCTGGGCAATGATTGGCAGCGCAAGGTGGAACACGTGGGCGCCAAGCCGGTACTGGATTTGAACGGGCCGCTGGTGCTGTAGCGGGAGGCCGGCCCAAGAGGTCGCCAGCCATGCGCCATGGCAGGGAGTGGCGCGGCCGCCGTCGCGGCTGGTCATTGTTTCGCGCCTCTCGTTCCCTCTCCTCTCATTCTTTCAACCATCCGGCGCGAACCGGAAGCGACTGCCTGCGCCCAGGGGAAGTTCGCAGCGTGGCAAGTGATTGATGTGCAAAGGGATTGTTGGACCGTGAGCGGCTTTGCCAGGCGAAAGCCCTGCTCTTTGGGCAGGTTCGCGCGCGTTGGCGGAAAAGTGGAGGAATGGCGCGGGGTTATAAAGACGCG # Right flank : TTCTACCTGCAGCAGCAGAGCTTCGGCGGTAACGTGCCCCGCCCCCTCCTATCGCCCCAGTCCGACATCCACCCAGCCCTCCTCCGCTGACACTGCCCCCATGCCCCTGCACCGCCGCACCCTCTACCGCGCTGCCGTCCTCGCTCTGGGTCTGGCAGCCGCGCTCCGCACCGGCTGGACCAGCGAAATCGGCAACGCCAACCCCCTCATCGCCGAGCGCTGGCAAACCCGCCCCGTCGTGGTGGTCGCCCCGCAGGAAAAAGCCCCCCTCCTCGCCAAGGTGCGCGCCGCCCTGCAGGAACCGGCCCTGCGCGAAGGCTTCCGCGAGCGCGACATGGTGCTGTTCACCGTGGTGGCCGGCCAGGGCCGCCGCAATGGGCAACCGCTGGGGGCCGCGCGCACCGCGGCGCTGCTGAAGGCGCTGGATCTGGATGCGCGGGGTCCGGCCACGTTCATCCTCGTGGGCAAGGATGGCGGCGTGAAGATGAAAGAAGGCGCGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.90,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8257-7085 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQDS010000001.1 Acidovorax cattleyae strain MAFF 301576 Acat301576-2_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8256 28 100.0 32 ............................ TTCCTGCCGCCAGCGGGCGGCGTCGATCCACC 8196 28 100.0 32 ............................ TTTCCCGAGACGAGCGGGACCTGGTGCTCGCA 8136 28 100.0 32 ............................ GATTGGAGAGTGGGCAGAGAACGCGTGGTTGG 8076 28 100.0 32 ............................ TCCTTCTTGCGCGGGATGCGCGACCACATCGG 8016 28 100.0 32 ............................ TTCGCCGACCTCGCCACCGTGCACTGCATGGT 7956 28 100.0 32 ............................ AAAGAGCTGCCCTTCCCTGTGCGGGTGAAAGC 7896 28 100.0 32 ............................ TTAATCCAGTCCTTCGCCATCTCAAACGTGTT 7836 28 100.0 32 ............................ TTGTGCTGGCAGCCGTAGGTCTTGCGGATGTA 7776 28 100.0 32 ............................ GCGTTTCAGCTCGAGATGCGGCGCATTGACCA 7716 28 100.0 32 ............................ TGCAGCGCGGCGAAGAATGCGCTTGCCATGGC 7656 28 100.0 32 ............................ TGATGGAAGCAATAGAAAATGGCGATAACACT 7596 28 100.0 32 ............................ CTCGACGTGAGGGCGCTTGTGTTTGCCCTGGT 7536 28 96.4 33 ...................A........ GCGTGCGCGTGCTGTGCGCGCCCAGGTCCGCAT 7475 28 100.0 32 ............................ AGCAGAAGCGCCGTTGATCGCTCAGCTCGACG 7415 28 100.0 33 ............................ AATACGACCGGGCTCTCCGCCAGTGCCCCACGC 7354 28 100.0 32 ............................ CAGCATGAGCGCTGACACCACCCCGGGCCTGG 7294 28 100.0 32 ............................ TGTCCGATGTCTTCTTCGATGACGCCGAGATG 7234 28 100.0 32 ............................ AGGCACCCGCCGCAGCAGTGGCGCCGGCCGAA 7174 28 100.0 33 ............................ AAGGAGCCGGGCGAGCTGCGCGGTTAAAGGCGC 7113 28 82.1 0 A...G..........C.AG......... | G [7088] ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.9 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : CCGCCTTGCTAGAGCTGCACACACAGCCCTGGTTGCAAGGTATGCGCGACCATGTCCTTGCGGGCAATGCCATTCCGGTACCTGCGGACGTGCGGCACCGGGTGGTGCGCCGCGTGCAGGCGCAGAGCAATCCGGCACGCCTGCGCCGCCGGCAAATGCGTCGGCACGGCTACGACGAAGCCGAAGCGCTGCGGCGCATTCCGGACAGCGCCGCGCAGCACCTGCACCTGCCTTACCTACACCTGCAAAGCAGCAGCACCGGACAATCGTTCCGGTTATTCGTGGAGCATGGCCCGTTGCAGGCTGAGCCCCGGATGGGCTACTTCAGCGCCTATGGACTGAGCACCACGGCCACCGTGCCCTGGTTTTGACCCTTTTTTGGGCACTGCTCTAGGTTCCCTAAAAATCAATGACTTACACGCACCCGGCACGGAAGGGTCAAGGTGCGGGGTCCGGCAGTTTTCCCTTGTAGGTCAACAGGATAGGACGTTTTATCGTCA # Right flank : GCCGTGAGCCTCTTAGCTGTCGCCAAGCGGAAGGCGCACGTGGCACATACCGGGGGCGCCCTTCAGGGCCTGGTGTTGGGGCAGCCCGGTATCGGTGCCCCTTCCGTACATTCCGATGGGATGTTTTTGAAGACGACATCCCTGCCCACATAGACCTTGTTGGCCTGTATGGGTGCATCGAGTTGCCATTCGATATCGCCGTTCATCCAAAGATCGACCACTTCACTTCGGCCCAGCAAGGTCTTGGGCTCGATGCGATAGAGCTGCACTACATACGGCATCTTGAAGCGCGGATGGGTGACACGCTGCAGGAACGACGCCTTGTGGAATTCCAAGCGGTATACCCGGTGCGGGCTGTTCTCGGCATCGACGCCGGTGGGCGTCGCCAGAGCCCATCCTGCCAAGCAGCGCATTCAGGCCCAGGCACTAGGCAATACAAGGCACGTTCTTGAGGTGCGAAAGCTTCATCACCACTTTACGTAATGTGATGCCATCGGACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4071-4372 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQDS010000116.1 Acidovorax cattleyae strain MAFF 301576 Acat301576-2_contig_116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 4071 32 100.0 35 ................................ GAGGCCGCGATGCAGCAGCCAAGCCAAGAGCCGCC 4138 32 100.0 36 ................................ CACCCGTGTTACAGCACGGGCGGAAGGCGCTTGCGC 4206 32 100.0 36 ................................ CCCTGGTGTTCGGCGATCTTCAGATCCCAGGGAAAC 4274 32 100.0 35 ................................ TTGAACTCGGCGGCCATCATGTCCACCAGCTCGAT 4341 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 100.0 36 GTCGCGCCCTGTGCGGGCGCGTGGATTGAAAC # Left flank : GCCAACGTGGTGCTGAACGTGGCCTTCGGCCAGCCCACCATGGCGGTGGACACGCACATCTTCCGCGTGAGCAACCGCACGGGCCTCGCCCCCGGCAAGAACCCGCTGGCCGTGGAAATGCAGCTGCTCAAACGCGTGCCCGCCGAATATGCCGTGGATTCGCACCACTGGCTCATCCTGCTGGGCCGCTATGTATGCCAGGCGAGAAAGCCGCGCTGCTGGGAATGCGTGGTGGCGCCGTGGTGCGATTACCAGCCGAAGACGCCGGCGCCCTGAGGGCGGGCCCTTTCGCTCCCTCCCTTTCCTTTTTCTTGTTGCCGGGCGTTGCGCACCCCGAGTGACCGGCTTGTCCGCCTGGGGTTCGCGCGGGGGCAAGTGGTTGAGGGCAAAGGGAATTTTTCCTGGGTGGGGGACGGGAAGCGCGAGCGGCGGGTCGATTGGGGCGGGTTCGCGGATGTATGCGGAAAATGGCTGGGGTGGCGCGGGTTTATAAAGGTGCC # Right flank : CTGAGCAGGATTCGCCTACCAAGCCAGCACCACCCGGTCGCGCCCTGTGCGGGCG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 37-470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQDS010000117.1 Acidovorax cattleyae strain MAFF 301576 Acat301576-2_contig_117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 37 32 100.0 35 ................................ TTTGTCCCAAGCATCACCAAGAGGAAACCATGTAC C,T [38,58] 106 32 100.0 36 ................................ CGGCATGAGGCGTTTCAGGGGGCTCGACATGTCGCC 174 32 100.0 35 ................................ GGTCGCATCGTCGCGCTCTCCCAGGTATGCCCACC 241 32 100.0 34 ................................ CAGCCAGCGGCAGTGCCTTCAACGGGAGCCGGGG 307 32 100.0 33 ................................ ACCCCCCGGCCCTACCAGAAGCTGATAACCGAC 372 32 100.0 35 ................................ TCGAGCATGAGCACGCGGGGCTTGCAGAGCGCCAC 439 32 96.9 0 ...A............................ | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 99.6 35 GTCGCGCCCTGTGCGGGCGCGTGGATTGAAAC # Left flank : AACGTCTCGTGTGGGACTTCGGCGTCGCTGTCTCGGG # Right flank : CAGCACGAAGGCCGACGCATCGAACCGGCGCACCGGGTCGCGTGCGCTCCGGCGGGCGCGAGCATTGCGCCACGCCCCCTACCAGCCAGTTTCCAAAACAGGATTTCCTGTCGGGAAACTGGCCTCAGTACTGCAACGCCGGACGGTCCAGTGAATCCAGGCGCATGGCGTCTTCCAGGATCGCTTCCGTCAGCTGCGGCGTGCTGGCAGGTCCTTCGCTCATTCCGTAGGCCTGCTGCGCAGCATCGGCTGCAAGCGCATGCTGGGTTCGAGGAGAGTACTGTGCAAGCTCCTGCCGCGTACTCTCGGCCAAGGCAGGATCAATAACCGGCATCGTAGTGAAGATGGCGCCGGGTGTCGGATTGCGAAGACATTCGGCTTCCCATTGCTGCGCCGTGGCATGCAGCGAGGTTCGCGGGTCCTCGATCTGCGCCCTGACGGCCTCCATCCGCGCCCGCGCGTGGGTGGCAGCGGGTTTGTCGAAGTGTTCGAGCACCGCA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : GGTCGCGCCCTGTGCGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,1.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9680-9446 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQDS010000331.1 Acidovorax cattleyae strain MAFF 301576 Acat301576-2_contig_331, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 9679 36 100.0 30 .................................... CTGAAGACCTCCGCGCTTGGCATGCTGCCA 9613 36 100.0 30 .................................... ACCACTTCTCGCCTTCTTCAAATGCCTTGG 9547 36 100.0 30 .................................... AGCGAACTCAGGCAGCAGCCGGAGGATGCG 9481 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGACT # Left flank : | # Right flank : CTGATCGCGATAACCCCTTGATTCGTCAAGGGTTTTTTCGCTTCTGCGGTCCAGGAAAACATGGCGTCTGGCTAGAAAAGATCAAACTGGTCGGGCGCTTTTTGCGCGGGCTGGCGGCTCCGGCCGTGGAAGGAAATGGCCCGTTCGTACTGCTTGTCGGTGAACTGGAAGATATGCACTTTGCCCCCGGCCGGCAAGGCCTGCTCCACCTGTCGGCAGAGCGTGTCCACCTGGGCCTGGCTGGTGCAAAAGCGCAGGTAGACGCTGAACTGGCTCATCTGGAAACCTACGTCCAGCAAGGCATTGCGAAACCCCGTGGCCGCCTTGCGTTCCGCCTTCGTGATCACGGGCAAATCGAACATCACTACCATCCACATCAGTCGGTACCCCGTCAGCATGGTTGCAATCCTGTCGCATGCGTCCGTTCAGCGTCACTTCAATCGGGATCGAAGCTGCCCGCCAGCGATAGCGGCAATCCGGGCAGGGGAAGATCGAGTCGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 612-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQDS010000456.1 Acidovorax cattleyae strain MAFF 301576 Acat301576-2_contig_456, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 611 36 91.7 30 AA.A................................ TAACAGCCTATACGGCCAACGACCCTGAAC 545 36 97.2 29 .....T.............................. GCGATCACCAAGGCTGGCGCGGCCATCGT 480 36 100.0 30 .................................... CAGAGATGCCGCGAAGATCCACACCGCCTT 414 36 100.0 30 .................................... CACCAGTTAAAAGACGGGACCCATGCCGTT 348 36 100.0 30 .................................... GGACAGACTGCGCCACACGCTGGAACAGAG 282 36 100.0 30 .................................... GACTCATCGAAGTTCGATCTGAATGCAGCG 216 36 100.0 30 .................................... ATTGGCCCGGCTGCTGAGCCGTGGCCGCCA 150 36 100.0 30 .................................... GCTCATGTCCGTGATGTAGAGCCTCTGAAA 84 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 98.8 30 GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGACT # Left flank : CGCGCGCCGAATGGCGGGCGGGAATGCGGTCAGCGTGGCCGCGGCCGCTCCGGTGCCGAGCACGCCGGAGAGGAACTTGCGTTTGGAGGAATCGACGGTCATTTTGGAGGAGTGTTTGTTGTCCGAAGAAAGGCACGGCACGGGGCATGCACCGCGCACGCGGCGTTGCTTGCGGCAGGCGCAGGGCAGGACAGGCACCGGAGCGCCCGCGGGCCCGGCTCAGGGCTTGGGCGCGCAGTGCGTGTCGGGGTTGCCGCAGTTGGCGACGAAGCCGTTCGCGGAATCGGAGCCGGAGCCGCCGCAGCCGGCCAGCAGCAGGCCGAACGCGAGCGTGCAGGCGGCCAGCAGGGAGCGGCCGAGGAGGGGCGGCACGGTGGGCCGTGGATGCGAGGTCATGTCGTGGGGAGAGGAATGGAGAGGCTTGGCATTCTTCGCTCCGACTATTGCGCGGGAGTGACGTTTGGGTAACACGGCGGTGACTGGCCACAGCAGTGCCGGTG # Right flank : TCCTGGCCGGCAAATCGCGCCGCCTCATCGGGTTCCGGCCAGTGCGCAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //