Array 1 96138-95012 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOMW01000063.1 Escherichia coli strain SC362 NODE_11_length_157391_cov_115.929_ID_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96137 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 96076 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 96015 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 95954 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 95893 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 95832 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 95771 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 95710 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 95649 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 95588 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 95527 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 95466 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 95405 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 95344 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 95283 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 95222 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 95162 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 95101 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 95040 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113437-111639 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOMW01000063.1 Escherichia coli strain SC362 NODE_11_length_157391_cov_115.929_ID_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113436 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 113375 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 113314 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 113253 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 113192 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 113131 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 113070 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 113009 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 112948 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 112887 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 112826 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 112765 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 112704 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 112643 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 112582 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 112521 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 112460 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 112399 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 112338 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 112277 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 112216 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 112155 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 112094 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 112033 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 111972 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 111911 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 111850 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 111789 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 111728 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 111667 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //