Array 1 198957-198324 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAAHQE010000001.1 Streptococcus pyogenes strain Bel002, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    198956	    36	 100.0	    30	....................................	TAAGAAAGATGACTTTATATCACCATATAT	
    198890	    36	 100.0	    30	....................................	TGATAGGTTGGTTTTACCCCCCATATCAAG	
    198824	    36	 100.0	    30	....................................	TAGCAGATGATGAGTTTCGCCACGGACATA	
    198758	    36	 100.0	    30	....................................	ATATTTTAATGTATCAGTCGCTTACCTGCT	
    198692	    36	 100.0	    30	....................................	TCCTGTTAGTCCTACAAGACGTTGGACTTT	
    198626	    36	 100.0	    30	....................................	TGTCGGTAACTTTATGCCTAAAGAGTACTG	
    198560	    36	 100.0	    30	....................................	AATAGAGCTAGACAAAAAATTGAGTTTGAC	
    198494	    36	 100.0	    30	....................................	GACATATTAACGTCCTTTCTCCTGCTTTCC	
    198428	    36	 100.0	    30	....................................	CGAGCAATACCAAAAGCGTTACAGCTGTGT	
    198362	    36	  97.2	     0	................................T...	|                             	CT,T [198327,198333]
==========	======	======	======	====================================	==============================	==================
        10	    36	  99.7	    30	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	                              	       

# Left flank :   AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTTTCTAACAAAGGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGATTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG
# Right flank :  ATTGCCGATGATAACTTGAGAAAGAGGGTTAATACCAACAGTCGGATACCTTTCTATTCTTTCTGTTAAAGTGTTTTTATGTTATAATAGGCAAAAGAAGAGTGGAGTGATGGAACAAACATTTTTTATGATTAAGCCAGATGGGGTTAAGCGAGGGGGGTAGTTGAAGAGGTTTTGCGGTGGATTGAACGCCTAAGACTTACGTTTGAGCGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACTACGAAGCCTTGATAACTAAATCATTTTATTCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGACACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGAAGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCCTGGTGATGATGGAGGTATTTTTAACATGGCGTACGGGTCTCATTCAAAAGACTCTGCTAGGC

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-2.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-A/B/C [Matched known repeat from this family],   
//