Array 1 58559-57387 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZG01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain J436 NODE_3_length_270846_cov_140.647329, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 58558 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 58497 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 58435 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 58374 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 58313 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 58252 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 58191 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 58130 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 58068 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 57965 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 57904 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 57843 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 57782 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 57721 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 57660 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 57599 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 57538 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 57477 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 57416 29 96.6 0 A............................ | A [57389] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 76061-74691 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZG01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain J436 NODE_3_length_270846_cov_140.647329, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 76060 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 75999 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 75938 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 75877 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 75816 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 75755 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 75694 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 75633 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 75572 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 75511 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 75450 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 75389 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 75328 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 75267 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 75206 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 75145 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 75084 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 75023 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 74962 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 74901 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 74840 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 74779 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 74718 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //