Array 1 32331-29801 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFAK01000020.1 Bifidobacterium sp. UTCIF-37 contig00020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32330 29 100.0 32 ............................. CACGCGGTCTGTGCGGGTGCGTTCGGCAGCAT 32269 29 100.0 32 ............................. CGACGTTCCGTACAGATGGCCCGCCCCGAGAT 32208 29 100.0 32 ............................. AGTCCGAGGTGGGTGAATGATTCGAGGGTGAA 32147 29 100.0 32 ............................. TCGCCCAGTGTGTCCGAGCCGTCGCCGCTGAG 32086 29 100.0 32 ............................. CCGTCCACGCCCACCGGCGACACGGACACGCT 32025 29 100.0 32 ............................. TCGTTCGTGTTCTTGGTCTTCACGTCGCCGCC 31964 29 100.0 32 ............................. TCCTTCAGGTACTGCACGCCCGTGGTCGCGAA 31903 29 100.0 32 ............................. GCTTTGGTGGACCCGAGCGTGATCAACTATGA 31842 29 100.0 32 ............................. GCGCGACAGGCGGACATGGAAGCCGCGTTCAC 31781 29 100.0 32 ............................. AGCAACCCCGCCGCGACCGCCACCCTGACCGT 31720 29 96.6 32 ............................C GGCTCGCACATCCGCGACAAACTTGGAGATCC 31659 29 100.0 32 ............................. GACCTTGCGGCCGGCATGGAAACGGCGCTTCA 31598 29 100.0 32 ............................. AGTGCCGCGTGTTCCTTGACTTCGACCCGCTG 31537 29 100.0 32 ............................. TCGGTGCCCCTGCTGCGTCGCCTGCTCGGTGA 31476 29 100.0 32 ............................. TCGCGCAGGTTCTTGCCCACGGTGTCGGGGTC 31415 29 100.0 32 ............................. ACGTTCGAGTTCTCCAGCGCGCAGATGACGAA 31354 29 100.0 32 ............................. TCGAGCCAGTAGGAGACTCCATCATCTCTCTC 31293 29 100.0 32 ............................. GTGGCCGTGTTCATCGAACCGCCCGACATCGA 31232 29 100.0 32 ............................. GTGACAGCAGCTATCTCCGTCACTCAGCAGGA 31171 29 100.0 32 ............................. TCGGCTCGCAGGGCCGCTGGCGACTTGGCCAG 31110 29 96.6 32 ............................A CGGCACCGAACGGCAGGGCACCACCGCCACCC 31049 29 100.0 32 ............................. ATCGCCGTGTTGATCGACCCGCCCGAAATCAC 30988 29 100.0 32 ............................. GAAACAGCCGACACGATCGACGGCATGTTTCC 30927 29 100.0 32 ............................. TACCCGCAGGCGTTCGTCAAGATCACGCTCGG 30866 29 100.0 32 ............................. ACGTGGCGACGACTTTCGCCTTGTCATTCGTG 30805 29 100.0 32 ............................. TCGCTGATTTGGTTGAAATCCCTGACCTGATT 30744 29 96.6 32 ......T...................... GCGGGGAGAAGCCGCAGGTGCACCTGCCGGAA 30683 29 96.6 32 ......T...................... GCCATACGACATCCCCCGGGGCGTCCCTCGAC 30622 29 96.6 32 ........A.................... ACGCTGCAGGATCGCGTCGACCTGTTCAAGGG 30561 29 100.0 32 ............................. CAGATGCGCTACGCCATCGCGATCCTCAACGA 30500 29 96.6 32 ............T................ GCGACCTATTTCGCGAACGACGCTGCACGGAA 30439 29 100.0 32 ............................. CCATTGACCTACCTGAGTTCGCTGGACTCGGT 30378 29 100.0 32 ............................. CCGCCCACGTAGAACACCGGGGTGCCGTAGGA 30317 29 100.0 32 ............................. TCGCCGACGCTCGTCACCGCGGACGAGAAGAA 30256 29 100.0 32 ............................. ACCTCGTCACCATCGCCAAGGCCACCGGCAAC 30195 29 96.6 32 ............................T AATGGTGGTTCGAGGAATTCCGGGCTGGTGGT 30134 29 100.0 32 ............................. CTCAAAACGGATACGGCGACGGTCGCGAAGAT 30073 29 100.0 32 ............................. GTGGGCGCCGCCCCGATGCATAAGATCCTCAC 30012 29 100.0 32 ............................. GATGTTGGGCCGGGGGAAGTTCCTGTGATTCG 29951 29 100.0 32 ............................. GCGAGTTCTTGGATGACCTTGATTCAGACGAG 29890 29 93.1 32 .............A..............T GACTCGCACAGGTACTTCGTGGTGACGATCGG 29829 29 89.7 0 .......................TG..G. | ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.0 32 GTTCGCCCCGCACGCGCGGGGATGATCCG # Left flank : ACGTATATGACGTATATGAGGAATTCCACGAGGAGGGGGAATGGTAGTCATCGTATTGACTGTTGCCCCGCCCAAATTGCGCGGTCATTTGACCCGATGGCTGTTTGAGATCTCACCCGGCGTCTACGTGGGCAAGGTGACCGCGCGCGTCCGGTCGTTACTGTGGGAGCAGATTTTGGATAATATTGGAACAGGTCGGGCCATAATGGTCTTTCCGTCCGATAATGAACAGGGAATGGAATTCCGCACCTATGGCCAAGAATGGGAGCCAGTGGACTACGAGGGTCTGGAATTGATTATGCGACCGAACACGAGTCAGCAGCAAAGACGGAATGCAGATCGGAAGACCGGATGGAGTAAGGCGTCTCGATACCGTAGGTTTGGTCGATGATGCCGGTGCTGATATGTTGCGTTGCGCATTGATCGTTCCTTTGGAAATGACTGTACGAATCGAATTTTTCAGTAAACAAGTCGTCGTCATTTCGGCATAAAATCAGACT # Right flank : CGGGGTCATGCTGTATCGACGCCTGTATGGGATTCAGCGCGGTTGTGGCCGATTTCGTTGCTGAGTCCCGCGGATTCGGGGGACTCAGAGGGATTTATTGCGATTTTCGCGTTGAGTCCCTCGACGTCACCCATTCATGCCGATATCGGATCGGAGGCGTTCCGCCGGGGTTGCTTGAGAATGGCGGAATTCCAACGATTTCCGCTTCGTGTTCGGGGGATGGCTGTGTGGTTGGTGCCTGGGATGTGCTCATGGCGTGGGACTCAGTGTCGATTTCTGCTGTTATCGCGTTGAGTCCCGCGGATTTGGGGGACTCAAGGTGGTTTTTCGTGATTCTTGTGTTGAGTCCCGCGGTCATGCTCGTCATGCGCATGTGGGGCGACCGGAGGCGGCGGGACGGACCCGTGTTGTCGCCTCAGGATGGCGACATATCCACGTATTTGGACAGGGTGTTTTGTTTTGTTGATGGACTGAATTAGACAGGGTGCCTAGACTTGGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 177392-176521 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFAK01000005.1 Bifidobacterium sp. UTCIF-37 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 177391 36 100.0 28 .................................... CATCAAATCAATCCCCGATGTGATGCAA 177327 36 100.0 28 .................................... CGAGTATCACCGGATGCTCCGGGCGATG 177263 36 100.0 28 .................................... CGGTCCGGGTTCCTCATGGTGGGCCGCT 177199 36 100.0 28 .................................... GAAACGAGCGTGGTGTCGTGGCCCGCGT 177135 36 100.0 29 .................................... CTTTCACACAGCAAGCCGGACTCCGCGTC 177070 36 100.0 28 .................................... CTCGTGGAGCGGTGGACCTACCGGCAGG 177006 36 100.0 29 .................................... TCAACGCCCACGTGGTCTTATGACCAATA 176941 36 100.0 28 .................................... TCGTGCGTCGCCGGGACTTGCACCCGGC 176877 36 100.0 28 .................................... AGGTGGTCGAGTAGGTGGTCGGTGAAGT 176813 36 100.0 28 .................................... CCGACGAGGCGCAAACGTTCGGCGGCAT 176749 36 100.0 29 .................................... GAAGCACTCGGGTACTGTTCGTGACGTTT 176684 36 100.0 28 .................................... GAGTCCCGAGGATATTCGCGAGGATACG 176620 36 100.0 28 .................................... GCGTGTTTGTGTGTATCGCGCGTAGGTA 176556 36 94.4 0 ......................C.......T..... | ========== ====== ====== ====== ==================================== ============================= ================== 14 36 99.6 28 CAAGTCTATCAAGAAGGGTGAATGCTAATTCCCAAC # Left flank : ACTCAACGGGACCGGATTGACGATTCCCAGTTCGCTGAATGACTTCGCACAACAATATGGCTTGTACTGTGAAGGGCGTGTCGACCGACTCGCGGTGCCCGAATATGCGGGCATCGTATGAAAAGGGATGAGGACAGTGGCGGCATGTGGTGTTTGGTGATGTTTGACCTACCGGTCAAAACCAAGCAACAGCGTCGTGCTGCTACAGAATTCAGGAACATGCTGTTGGATATGGGCTACAGCATGGTGCAGTATTCGGTTTACGCCAGATACACTCCCACGCAGGCGGGAAACCGTTCGACGGTTCAGGCGATCAAAGCGGCTTTACCGGCACACGGATATGTGCGCGTGTTGCACATCAGCGATCACCAGTGGTCTTCGGCACTACGATTCTCCAACTCCGAACAGGACCTGGAAGAGGAGACTCCGCAGCTGTTCACGCTTTTCTGAATGAAGAAAGTGCTACAAACCGCAGAAAATGGCCCTTCTTGAGAGGCTAT # Right flank : CCGTATCCTGCGTGAATTCATTGCTGAATTGACTGTCTCTTAGACCCGTTTCGTGGCCGGCTGTATTGCGATTATGGACGCGCTGCGTGCGCGTCATGCCGGCCCGCCTGTCGGCTTGCACGTTGCCTACAAGCAGCTCCGCCGCTTGCTTCACGGCAACGCCCCGACAAGAGGAACCCTGACAAGAGGAGTCAGGATGAGACCAACGAATTTTCCGGCGCGAGATGTTAGACGCTCGGCCGCGCCATCATGAACCGACTCAATTGCGCCGCTCTCCCGCACCACTTCAGCCATGCCGCCCGGTTGCGCCCCTGTCTGTGCCCCCGGCGGTGCCGCTCAACGCAATTTTCGTCGATTTTGGCGTTGAGCGGCACGACGATACGTCGTTACTGCCTCGCCGTCGTTTTGACATGTTGTCAAAACGGCTATTTTCCAACGATTCTGCAATAGCCAGTATTCCAAAAACTGCCTCTGCCGCCGCCTTGTCTGCCGTTCAACGT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTCTATCAAGAAGGGTGAATGCTAATTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //