Array 1 11573-11360 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSDP01000154.1 Aphanizomenon flos-aquae 2012/KM1/D3 mira_49_len:32848, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================ =========================================== ================== 11572 44 97.7 43 ...........................T................ TGGATCTGTTTGTAAATGATGTTGCTAATTTGACGCTGATTAA 11485 44 100.0 38 ............................................ GGTATTCGGTGGTTAATTCGAGCGATCGCTGTGGGAAT 11403 44 97.7 0 .....................A...................... | ========== ====== ====== ====== ============================================ =========================================== ================== 3 44 98.5 41 TTGTCTGAATCAGGATTTCCAGGATTTCAGGATTTACAGGATGA # Left flank : TTTGGTAACAATTACCAGTTTTCTTTCTTTCGCATACTGCCATATTTGGGTATCACTTGGACTGTTACCTAAGATTGAAACATGGACAATGGGTAAAGATGGAGTAAATTGAATTTTCACGGGTAGATTTTCATCGAATAAAAACCCATTCATGCGATTTTTCTCACTTCGTAGTGATTCCCCATCAACTTTGCTGCAAATTGAATACAAGCATAAATATCTTCTCGTTGTAGAGAGGGGTACTCTTCCAGAATTTCCTCAATTGAATCACCAGCACCTAAAAACTCCATAATTGTTTGTACAGAAATTCGAGTATTAGTAATAATAGGTCGTCCATTGCAAATATCTGGATGAATAGTTATTCTGCTTTCCATTTTGTTTACTTCTTGTCGTTACGGATTAATTGTAGCATTTGTCTGATAGCGTGGTGCAAGCTGTGTGAGGATTTCCAGGATGAGGGATCTATTTGCAGAGGAGGTTGCTAATTTGACGGTGATTAA # Right flank : GGTTGCTAATTTGAGGATAATTAATGATGAGCGATCGCTGTGGGAATTTGTCTAATAGTTGACAGGATGTAATTTATCATCGCTTAGACCCCCGACTTCTTAGAGAAGTCGGGGATCTGAATAACTCACAGGATTAAAGATCGCTCTTGTGATAAGCTGTTGTGCATTTAGTTTGTATAATTCTAGCGGGCAAGATGCCCGCACTACAAAGTTTAAGTAAATTATGGTTATCAAATTTAGCTGCGTAACAGCTTAGGTTATTCAGGGATTAAAATCTCTAAAAACCAAAGGAGAAAACTGTATCGTTGAAGTCGTAGTCACTGACTCCTACACCAGCGGGTAAATCTTCAAACCCAAAGATATTGTTACCAAGGCTCTTAATATGAGCCGCACCGTCTGGATTAGCTGCACCAAAGCTAAAATAGGCAACAGGTAAACTGGTGTAATTTTGGGCGGTAGCTGCGCTATTGTTAGGATTAGCACCAAAAAAGGCATTAATC # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTCTGAATCAGGATTTCCAGGATTTCAGGATTTACAGGATGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.36%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 5861-2362 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSDP01000206.1 Aphanizomenon flos-aquae 2012/KM1/D3 spades_101_len:17822, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 5860 36 100.0 38 .................................... AAATGGGAAGCAGCGAGAGGGGTAGTGTCCCCAGGTAA 5786 36 100.0 38 .................................... TTCAAAGCTACCTGTGAAAGAAATGTGTTTAAGTGCCA 5712 36 100.0 38 .................................... TTAATGAAGCTGCTACTAAAGAGTGGTTTTACTTTCAT 5638 36 100.0 39 .................................... ACTAAACTTTGCTTCAGCAGTATTGATACCAACTGAGGA 5563 36 100.0 38 .................................... TGCAGGCCGCACTCGGAGTCTCCAGCTTCAAACCAAAG 5489 36 100.0 41 .................................... AGATTATTAACCACTATTACAATGAGGTAACTCACATGTTT 5412 36 100.0 42 .................................... GAGGAAAAATTATACTTTTGCTAGTACAATTTCTTCGGGCAT 5334 36 100.0 35 .................................... TAAAAGAATTAACCCTTTGTTTGATGATGAATTAC 5263 36 100.0 35 .................................... TCTCAGTCAGTTGAAGAATTTACCAACGACGATTA 5192 36 100.0 40 .................................... TTTTTGTTTTACGTGAGGAAAGGGTAATTAACGGCTAAAC 5116 36 100.0 38 .................................... TGTTCTAGCCGAAAACCTCGATATGCCCAGTATATTTA 5042 36 100.0 42 .................................... GGTTGTCATTGTGTCCAACTTATACCGCTCGGCTGTTAAAGA 4964 36 100.0 38 .................................... AGGACAGTTCTCTAGCTCTCTGTGTTTACCGTGTCCCC 4890 36 100.0 41 .................................... GCTAAAGCATCTCAAAGACAACGCGTTCTAGAGTTAATTAA 4813 36 100.0 42 .................................... CTCACATAAAATAGATACTAAGGAGTTTCTATATTGGTGTGA 4735 36 100.0 33 .................................... TATTATAGTATTATTCAAGGGTTTGCAGGAGAA 4666 36 100.0 44 .................................... AGGGCAACAAGCCTTTGATTTTAGACGACAAGAGGCTGACCAAA 4586 36 100.0 42 .................................... TCTGGATTAGTCGTTTCCATCATAAGTACAGGGGCAATTGCC 4508 36 100.0 35 .................................... TTTGAACTTGGTGTTAAGTAAGTAAGGTTTTTATG 4437 36 100.0 40 .................................... ATCTCATTTAGGCGGCTGTTATTTGCAGTTCCTAAACGGT 4361 36 100.0 35 .................................... TAGCTTTAGCTCTGTGAAACAAACAACTAAACCAG 4290 36 100.0 41 .................................... TTCAACTGTTACTAGATGAAGGTAAAAAGATTAGTGACAAC 4213 36 100.0 37 .................................... TTTACAAAGGGAATACTTAGGTATAGTTCTTACTAAA 4140 36 100.0 36 .................................... GGTTGAAAGCTTCCCTGGATGAAATGCCAGAAGATG 4068 36 100.0 46 .................................... ATCCGATGAACTGTCACCCCAACAGTTCATTGATATGCTCCAAGAG 3986 36 100.0 37 .................................... GGTTATTGTTTGGACGTGGCATGATGATTTTCCTTTT 3913 36 100.0 38 .................................... TAGTTGCGCTGTTTAGTGCTGTGATGTTGACCATTTAA 3839 36 100.0 39 .................................... GTGCTATCTGTATAGCAGCAAAGAATAACCAAATATTAT 3764 36 100.0 42 .................................... CACTACACTGTTGGTGGAGCTGGATCAGATGACCTTAGCAAA 3686 36 100.0 35 .................................... AGAGAACTGCGATCGCAAGTGCAGCGCAGTAAGTC 3615 36 100.0 39 .................................... TTTCTCCTCCTTATTTAAGGTCATAGGTGAGATTGAAGA 3540 36 100.0 39 .................................... GAGTCGGTGGCTGTCACTACGAAACTATAACTCAACTAA 3465 36 100.0 37 .................................... CTCTATCAGAACTGGGATGTGGTTACTCTCTTAGAAT 3392 36 100.0 36 .................................... TAGAGACTTTGGCTAACGCTGAGGTCTCTTTTGCTT 3320 36 100.0 40 .................................... TAACTTATTTGGTGTGAGCATAAGATAAAAAAGGTAAAAA 3244 36 100.0 41 .................................... TTACCAACTATACCAATTATGGTACAGACGGCAACGTCCTC 3167 36 100.0 40 .................................... TTGTACGCATAAATATCATAATTACTATCAGGAACAACAG 3091 36 100.0 42 .................................... TTCTCAGATTTATAACCCACTCAACCTAGCCCAAGGTGGCAG 3013 36 100.0 37 .................................... GTTCTTTCAATGGTTGATTTAGATTGTCTTGATTCAT 2940 36 100.0 41 .................................... CTCCCCTGGCAGTTAAACGCCATAGCAAGAATAATTGAAAA 2863 36 100.0 38 .................................... TTGTGAGAAGGTAGTAAGTTAACCCAACTTGGATTAAC 2789 36 100.0 42 .................................... GGGCAAACATACCTTCATTATCAATACCTCTACGAAGGTCTA 2711 36 100.0 41 .................................... AAAGGTAGTCTCTTCTCTGAGCTAATTCAGGTTATTTCCAA 2634 36 100.0 45 .................................... TATAGGTAAGACTTTATTCCTTTGGGTAGCTGGAGAACCTATGTC 2553 36 100.0 38 .................................... ATTACTTTGTAATTAGTTTACCAACATAGTATACCAAC 2479 36 100.0 46 .................................... AATAGCTAAGTGGATTCCAACCAGCTTACATCAAGTGTTCTATGAG 2397 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 47 36 100.0 39 GTTTCCATTAATTCCACTTCCGATAAAAGAAGCGAT # Left flank : TATTACGAGAACTTCCAGCAACTACTACTCCTATTAAAGCCCCACCACACATAAGCCATAGAAATGCTTTCCACCGTCGGGTATAACAATATCCACCAATGGGAATGAGCAGAGAAAGGAAAACAGCAATCCCTATATTTAATCTGGAAAGGCGTGCTAAATATTGTACTTTTTTACGTTCTTCTTCTTCCTTAATTGAATCAAGATATTGACGTAAAATTTCTTGATCTTGATCTTTATTTTGTTCTGACATTGTAGAATTTTCCTCACCAATCTGATTATATTGTTTACATCTCGTGTAACAACATAATCTCAATTTTGTGATTATTCAATACTTCTCATGCGAATGAGGAAACTTTATTTTTGATAATTAATTTGTAAAATATCCTTAAACCAAAGATCCCTGACTTCTTTAAGAAATCGGGGATCTCATATCTTGACTTTCTATAAAAGAAGCGATTGTTTCTTCTTCCAATGCTACTGCTTACTCTTCAGTAGAA # Right flank : ACCCGTCATTCTAAACCCATACAGTGCCTAATGTCTAGATGCCATTTGCGACGGGGTATCAATTGGCGGCTACTTTCCGAAAATAACCAGGCAATAAAAAACCCTGAAACCCTTATACAGAGAGACATCGGCGGGGTTAACGGAAACATCAGCATTTGCGCCATTGACCTGACCCCGCCGCTAACAAATCATCGCAAATAAATAAATTCGTCATTCGCATAAAATCACTTGTATAAATTTTCTGTGTGATTTAACTTAAAAAAGTACAATTAATACCGAATTCCAACTAAACCATGTATATTTCTAATCGTGCTGCCTTAGTGCGGAACTTAGCCGTTGCATTTCTCAATGGGACAATTACACTGATTATTTTGCTAATAGCACCTTTAGGACTAGCAGCAGTAATTATCAATACTATCTTAGTTACCATCGCCACCTTTGCAAATGCCACAGCCGGAGATAGAGTTGTACGTTTTTTACAACCATCCCAAATCAAAACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCCACTTCCGATAAAAGAAGCGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 17760-14531 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSDP01000206.1 Aphanizomenon flos-aquae 2012/KM1/D3 spades_101_len:17822, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 17759 36 100.0 37 .................................... TCGCCGCTTTTATTGCAGCTTCCTTTAAAAGTATCTC 17686 36 100.0 36 .................................... GATTGCTACACTTCCCCTTACCTTCCTGAAATAACT 17614 36 100.0 35 .................................... AATTGCTTGTTGGGACAAGCAAACTTTCGTCGATT 17543 36 100.0 36 .................................... TCTGCAGCTTCCAAAAGAAGGATTTCTGTGATTTGA 17471 36 100.0 36 .................................... GATTCTACCTGTCCACCTTGTCCATCTTGAGTTTTC 17399 36 100.0 39 .................................... TCTCGCACATTAGAACGGAAACAATCTTGCGCACATCTT 17324 36 100.0 40 .................................... TATTTCTACATACGCCACAACTCGCCTAGAGATTGCAACC 17248 36 100.0 35 .................................... GATCGATGTTTACCTCGGTGCCAAAAGTGACTACG 17177 36 100.0 41 .................................... TCTAACTTTACCATCAAGCACTACCTCTATTACGAAAGATG 17100 36 100.0 36 .................................... GTCCAAGTTCCGTAAACATATCTACAACGTCTATAG 17028 36 100.0 34 .................................... GCAATTGTCGCCAGCTCTTCAAGAAGTGGTGGGC 16958 36 100.0 40 .................................... TCCCTGCTGTAGCACGGGAATCTGAATTGCTAAAGGCATC 16882 36 100.0 36 .................................... GATAGACACCCTGAATTCTGATACAGCTTTATTTTG 16810 36 100.0 38 .................................... AAAGTGAGACATAACTAAAAACCTAAAATCTATTGTAC 16736 36 100.0 39 .................................... TCTCCATTGAATTGTTCGTCTTGGTATAGCGGAACGATG 16661 36 100.0 38 .................................... AAAAAAGTCGCCCACAAGGCGCTGTTATGACAGACCGC 16587 36 100.0 35 .................................... TTCTGACCGCTGCATTTACAAGCCAATCTAGGCAT 16516 36 100.0 35 .................................... CCTTAAGAATAGCTGCATGGTCAACTATGTTCAGA 16445 36 100.0 36 .................................... GGGAATCCTCAGATCATTCGGAGTAGTGAAAAAGGT 16373 36 100.0 35 .................................... GTAGAGCAATAATTGTTCCCATTGCGCGAAAATTG 16302 36 100.0 35 .................................... CGCGCTCTCTAGTGGTAACCCCCAGTTTACTCTAA 16231 36 100.0 39 .................................... CGTTGGCGGTGGGGTTGTATTCGTTTTTATCCCCAACGC 16156 36 100.0 38 .................................... TATGGAGCTGGAGCCATATCATAACGTCTCCCAATGGT 16082 36 100.0 40 .................................... TTCCACCGTTACCAACACCACCTTTGCCTCCTTGACCACC 16006 36 100.0 35 .................................... TAACTTGTGCGTCCCCGTCGTAATGGGGTTGCTTT 15935 36 100.0 38 .................................... GAGATTGCGGATCTCGTAGCAGGTAATTAGAGCCATTG 15861 36 100.0 36 .................................... TTGGAAGAAGAAGGACGAACAAACGCTAAGTTATTA 15789 36 100.0 35 .................................... TTTCCCAGCCGCATGGTTGTAATTGTCATCCCATA 15718 36 100.0 39 .................................... TGTTAAATCTTGCTGGACAGCTTGAATGTTCATAATCAA 15643 36 100.0 38 .................................... GTGGAGTTTCCACCTCGACCGCCTGCACCACCTTGAGA 15569 36 100.0 33 .................................... GGCGCGTTTCCGGTTCTTCGGGATGAAAACGAC 15500 36 100.0 30 .................................... ACAATAGTCATAAAATTCCTCTGAGTTTGG 15434 36 100.0 34 .................................... TCGAAGTTACGTTGAACAATAGTCATAAAATTCC 15364 36 100.0 38 .................................... AATGTTTGTACCCTTGAGTTCATCAGCAGTTTGAACGA 15290 36 100.0 29 .................................... GGAAGCCATTTCGGACTGCATCGCTGTAC 15225 36 100.0 39 .................................... GTAAGAAGTCTTGCCGCCATTGCCCGGACCAAAAACACC 15150 36 100.0 43 .................................... AGTGAAGAAGACGGATCCCATAAAAAGCATGAGGCTCCATAGC 15071 36 100.0 31 .................................... ATCTTAAAATGCACTAAATGCACAACGAACG 15004 36 100.0 36 .................................... TGAAAGCTTATTCATCTGCAATGCAGCGTTTGTCGT 14932 36 100.0 35 .................................... TTTTGAACAATCTGTTTCTGTTCAGCTTTTTGATT 14861 36 100.0 41 .................................... GGAAAAACATTGATTGAGAATAATTCCGCTTTTCCAAAAGA 14784 36 100.0 39 .................................... TAAATTATATTTACTGTGTTCATCACAAATTTTTCTAAG 14709 36 100.0 35 .................................... ACTTTTCTGTGTAATATCCACGAGCAGCAAATCCA 14638 36 100.0 36 .................................... CCTTGAGAAACGTTAAGCAAAACTAACTGATCTCCA 14566 36 80.6 0 .C..A......GGG.T............T....... | ========== ====== ====== ====== ==================================== =========================================== ================== 45 36 99.6 37 CTTTCCCGATTACTTCAAATCGGAATTAATGGAAAC # Left flank : CGATTACTTCAAATCGGAATTAATGGAAACCTTTGTATTTCCACTTGTTGCAGCATTATTTA # Right flank : CAAAAGATAGTACCTGAAACTGTGTTGATTATTGAAATAACGTAGTTTCAGGTATTTTCAATTATTGATAAAAATCAAATATTAATGAAAACAAGCGATAGCGAAGCGCTCCGTAGGAATCGCATACCGTAAATTTCCTGAAATATTAACAACAGCGATCGCCATCCTACTTCAATTGTTTGAAAACACTCAAAACCCCTAAATCTTACTCTGAAAAGGTTTCATCCTTTTTTCGTCACATTCCATTCACAACCGTAGAGCGATCCTACGGAGCGCTTCGCTATCGCTTCTTTTGGAAACTCGCGTTTCCAAGCATAGGTTTTAATAAAGCATATCAAAGTCCAAACCCAAACAAAAAGCAGTTGGGAAAAACCTATGCTCACATCCCGCCGTGTCTTAATTTTTGCAGACAGCGATAATACCTACTTAGCAGCGCAAAGCTTCAACAGAAAAATCGACTGGCAAAAAATATGTCACTACCTTGCAGATCCCAAAGAAGG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCCGATTACTTCAAATCGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 2054-2661 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSDP01000149.1 Aphanizomenon flos-aquae 2012/KM1/D3 spades_224_len:7696, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================== ================== 2054 28 100.0 45 ............................ GACTGAAACGTTTTGATAGGTCATAAACAGAAAGACCTAATTTAG 2127 28 100.0 46 ............................ ACTGAAACAGATATGGCACTAACGAATTAACTTGAGATTGCACTTC 2201 28 100.0 45 ............................ GACTGAAACGTTATAGATGAAGAAAAGCATAGAGTAGATTTAATG 2274 28 100.0 44 ............................ ACTGAAACGTTCAATTTCCCCAGCAGTCCCAACCTACCCAACTC 2346 28 100.0 44 ............................ ACTGAAACAAGTGCATCAATTGTTTTGCCCTTTCTTATCTCTTC 2418 28 100.0 42 ............................ ACTGAAACATTTAAGAGCTTTTTTTGCGCCCTCGCAAATAAT 2488 28 100.0 44 ............................ GACTGAAACTAGATAAAGCCGTCCTATTAACCCTCTTTTGTGAG 2560 28 100.0 46 ............................ GACTGAAACAGGCGTACAACTACGATAGGTACAAAAATTGTCCTAA 2634 28 92.9 0 .......T........C........... | ========== ====== ====== ====== ============================ ============================================== ================== 9 28 99.2 45 GTTTCCGCATATCTAATCCCCGCAAGGG # Left flank : CTACACTGTTTTATCTGATTATTTATGATTTACCTGACAATAAAGCAGCCAATAAACGTCGGACTCGTTTACATAAAATGTTGAGTGGTTATGGTAAGTGGACTCAATACAGTGTATTTGAGTGCTTTTTGACTGCTGTACAATTTGCTCAGTTGCAAACCAAGATAGAAAAACTGATCAAGTCTGATGAAGATTCTCTTAGAATGTATGTGTTGGATGCTGGGAGTGTGAGAAGAACTATTACCTATGGTTCGGAAATTCCTAGACAAGAACAGGCTATCATTATATAATTGATACATCAGCTTAAATTTTTGGCAGACCTAGAGCGGGGTCAAAAACCCTGGAGATTCGCCAAACAGCCAGAACCTTGACAACTAAATACTTTCAGCGTTTCATTAGTTTCAGTTGGCGCTTGACCCGAAGCCTGAAATAAGGTTTTTTAAGAGGTCCGCCAAAATCGTCTCTGGATTCCGCCCCCAGATTATGTTTCAGACGGCGGG # Right flank : GGACTTAAGCTACCCTTCCACTGCGGCTCAAAAAGTTGCGGAATTGGACGTGTGGGTGCGAGAACTGAAGAAACGGATGCCATCTAGTCATCATTGATTATTTTTATTGATTTAATCCTTTGGCTACATCTTTGGACTAGCAACCATTTTTTAGCTTCAGGTTCAAGGGCTGGCTTAATACGGAAGTTTAAAACATCTGCCCAAGTTTCTACTCCGTAACTACTAGCGAACGCCCTTTCAAGTTCCTTGAATTGTAACCAGTTGCGATCGCTGATAGCCTCAAAAACTGAGATAAATGTGTTCAGTGGTAGCAAGGTAGCTGTTTCACTCATTTTCGTAATCCTCAAAAATACAAACTATCGGCAAGATGTCATCTTCTATATCAATGACTTCAATTAGTCGTTTTCCCGGACTTTCAATGACATTTTTCTATCTCCGTTCAACTTCCTTAATGTATATGAAAAATAAATATTTGACAAGTGCAAAGTAACCAGTTATAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGCATATCTAATCCCCGCAAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 26344-23914 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSDP01000243.1 Aphanizomenon flos-aquae 2012/KM1/D3 spades_4_len_T:63657, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 26343 36 100.0 35 .................................... TTCTTGATTTGGCTAGGTTTGTTTTTGTCAGCAAA 26272 36 94.4 42 ..................................CA TGGTTAGTAATTCAATTTGATTCTTGATATCTGCGATCGCTT 26194 36 100.0 33 .................................... CATGAGTTTCGGTAAGACTGGGCAACTCGACAC 26125 36 100.0 35 .................................... CAGAATAAACAAGTCTAACAATATAGGGAGCTTAT 26054 36 100.0 39 .................................... ACTACTGTCACCAAAGAAGGTGAAGTTTTGTACCATCAC 25979 36 100.0 37 .................................... ATAACTTTACCTGAAGCAGACTTAAAGAACTTAGTCA 25906 36 100.0 37 .................................... ACTCCTCTTAGTTCTACTTTGGTATGTTGAGAATGCA 25833 36 100.0 36 .................................... TCTAATGAAAATGGAACTATTTCAGTTTACAAGTTT 25761 36 100.0 38 .................................... CTCATCAGCTTCCATTTTGCGACTGAAAAAAGCAGCAA 25687 36 100.0 48 .................................... TTCAAGGTGATAGTAGAATCTTCTTCCTCTTGAAACACAGACTTTTAA 25603 36 100.0 38 .................................... AATGCTGGTTTGGCTGTTACTGGAAGCAGTGGACAATT 25529 36 100.0 42 .................................... ATGTTTTAATTCCAGTTTTCCGCTTGGTTGTAGAGTTTATTA 25451 36 100.0 43 .................................... TGTTCAGAGTTATGGAAATTTGTCAATCGAAATTTACCAGAAT C [25444] 25371 36 100.0 35 .................................... ATCAGTCCCTTTTTCCCTGGATTCCCCTTCTTAAT 25300 36 100.0 36 .................................... TAAAACTTCTGTGAATTTGTTGTGAGGCGATCTCAT 25228 36 100.0 49 .................................... TCCAAATCATATTTAGTTTCTTCTATGACTGGATTTGGAATGACTTGAG 25143 36 100.0 36 .................................... CACCTCCCAAATACATAACGTGATTTATAGATGCTA 25071 36 100.0 38 .................................... TGCATCCCAATAAAAAGTTTTGCCGTTTATTACTTGGG 24997 36 100.0 35 .................................... AAGGCTGTGCTGTTGGTTGCCAAATACTCATTAAA 24926 36 100.0 36 .................................... TGTTAGTATGCCAGTCATAGTAGTCTTCCATATAGA 24854 36 100.0 42 .................................... TGAGTTGAGTTTCTGCATTCTTAGAAGTTAAAGCAATCTCAT 24776 36 100.0 38 .................................... AATAACTCCTCCAATCAATAGTGAACAAGTAGTAATAC 24702 36 100.0 42 .................................... TTTTGTCTTGCATCCTGCTCATCTCAGCTTTGACCATTGGGT 24624 36 100.0 37 .................................... ATGAATTTATGCAATGGTGGAGTTTACGAGCTTGTAT 24551 36 100.0 41 .................................... CTGTTCTAGCAGGTTCACTATTTTAATTTGTGTATTGTAGC 24474 36 100.0 37 .................................... CGTACTATTGACATTTTCTGTTTTCCCCTTTTTGTAT 24401 36 100.0 38 .................................... GGTTAAGTTATGCAACTTAGCTAATTAAGTCTAGTAAG 24327 36 100.0 39 .................................... ATCAAAAGTGTGGGGGATTTAGTTGGCAGGCTACTTTAA 24252 36 100.0 40 .................................... TTCAGCAATTAATCTCATAGTGTTCTCCAATTAAACTGTA 24176 36 100.0 37 .................................... TTTTTTAGGATTATAACCAGCGTCTATACAGCTGACA 24103 36 100.0 42 .................................... ATGATCGTTGTCTCCTGTGTTTTTTGGTTACTTTACCTGCAA 24025 36 100.0 40 .................................... AACGCCACCACGACTAAAACCTTGCTGTTTTTGTAAATAT 23949 36 94.4 0 .........................C....A..... | ========== ====== ====== ====== ==================================== ================================================= ================== 33 36 99.7 39 ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Left flank : TCCCATAACGACAATTTTCAATGCTAACCTACTTATGTTTTTGTATGTGATTGCTTATGATATTCCCTGTAATAAACGGCGCAAAAAAGTAGCTGATTTATTGGAAGGTTATGGACAGCGTGTACAGTATTCTGTGTTTGAATGTCAATTGAGTACAGAAAAATATCAAGATTTACGTCGTCAGTTGAGGAAAAAGCTGAAGTTAGAAGAAGATAATGTCAGGTTTTATCCTTTGTCTCGACATACTCTATCTCAAGTGGAAACTTGGGGTGTGGGAATACCTGTGATTGAACCACCTAGTTCAATTATCATTTAGTTGTTGCCGATGTTTGGGAAAAATAGCTGAAGTGTTGATTTTATGGTTGTGAACTTCGGTTGCTTATTGGATAAGGGTTACGCGGTTTTTAATGGTAGTTTTGTAGGCTGGTTGGCGGTGATTTTTGCTGACCTTCGGAAAGTGGGTCTAGACTCTTTGCACAGCAAGGGGTTAAAATGAAGGG # Right flank : AGGGGAGGGAGGCGATCATCAGGAGTATATATAAATACATAATAAAATATTTACTGATATTTTGAGAATCAGTAAATTGTAACTATCAATGTTTGGTAAGGGAAACGCTGTAACTTGATAGCTGCATAAACAATAACCCATGTCAAAGACAAGAAAATATTTGTAATAAAACTCTCAAAGTGAGGAAAAGCTTACAGAGTAAGAGTTAGAGAAAACCTTACAAAAATCTTGAGATATTTTAGATTCCTAGACAAATACTGAATCGCGCTCTTATAATTCATCTATAAGCTACACAGGGGATCTACCGATGACGGCAGAATATTGGCGGGCTAAGATTTGGGGGTTACTACATGACCCTGTATTAAAGGCATTACATGACAACACAGGACGGGGTAAAAATAGCTTCTATAAACAACTAGAAGTAATGAAAGCTTGGGTTGAAATTGGCAAAACCCCCGATGATTCTCGTGGTAAAGCATTAGCAAATATACTATTAGCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 16252-18808 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSDP01000312.1 Aphanizomenon flos-aquae 2012/KM1/D3 spades_34_len_T:34268, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================================================================== ================== 16252 37 100.0 36 ..................................... ACCCGAAAAATGGACTGATATCGTCGGAAAATTATT 16325 37 100.0 33 ..................................... TTACAATGCTTGCTATAGTATTGATAATTAAAG 16395 37 100.0 33 ..................................... ATATTTTTTTTGATGTTGATGATGATGATTTTC 16465 37 100.0 35 ..................................... ATTCCTCTTCCGTCAACTCCTGATGACTTAAAAAT 16537 37 100.0 34 ..................................... TCGCTGTCAAATTGGCAGATGATGTAATTGCTGC 16608 37 100.0 34 ..................................... AACTTTAAAGCCAGAATCAGACGTATCTTCATTA 16679 37 100.0 36 ..................................... CTTTTTTATATTTCCTGTAGGCGATCGCATATCCCT 16752 37 100.0 35 ..................................... ATCAATCAAACGCCCCTGAACTGAGTTCTTACCAT 16824 37 100.0 35 ..................................... ATTTACAAAATCTATTGCTACAACAAAAGCGCAGC 16896 37 100.0 36 ..................................... AAACATATAAGGCTCGATGTGAACTAGCCACTCATT 16969 37 100.0 33 ..................................... GGCTAATTTGGTATCTTTGACCAACCATGACGG 17039 37 100.0 33 ..................................... AAGAAATATTTGACCAGAGACACCATTTACCAA 17109 37 100.0 33 ..................................... TATTCTTGGGACCCTCTTTGAGAAAATTCAAAA 17179 37 100.0 36 ..................................... AGTATACAGGCTATTATATAGAAAGTTGATAGAAGT 17252 37 100.0 37 ..................................... ATAATTGGCGATCGCCATTTTGATTAACTGGGGTTGG 17326 37 100.0 37 ..................................... TTCCAATCTAATAGGGTGGGTTGACCGTCCATAATTG 17400 37 100.0 36 ..................................... CACTATCAGCATTCGGACAAACAATAATTGAGTTAA 17473 37 100.0 35 ..................................... AGCAAAGGCGGCCACAAATTAAAACACAAATCACT 17545 37 100.0 36 ..................................... ATATTGACTGATTAATTTTTGGTCAAGTTGATTGAG 17618 37 100.0 35 ..................................... TGCGCTTCAAATTCAAACCTGGACTGTATATCTGC 17690 37 100.0 34 ..................................... AAATTAATTGCTTAGGCAATGGACGAAGTATAAA 17761 37 100.0 34 ..................................... TGTACTGGTTCTTCCTGTGCTTTAGTTCCCGCTG 17832 37 100.0 39 ..................................... CTAAAAAGGAAAGGCAGATAGAGGAAGTAGGGGAAGATC 17908 37 100.0 33 ..................................... AAATATCAATTACTTGATAGTTCTCTATATGGA 17978 37 100.0 100 ..................................... AGCAATGATACGCCCGTTTTTAAGGTTGGGGCGATCGCAGATTGCAATTTCACTAGGGATTGAAACCCTGTCTTTGTGGGTATCTCAAATCCACAACCGA 18115 37 100.0 36 ..................................... TACGCTTTTGGTGAGATTGAAAATGAATTGGGCTAT 18188 37 100.0 37 ..................................... AAAAGTATCAACACTCCCGCACTAGCTCGACTGCAAT 18262 37 100.0 35 ..................................... AGAAATATCTACAGCATCGGCACGATAATCATAGG 18334 37 100.0 37 ..................................... CTAATAGTCTTTATCCAACAAATATAATAGAAGAATT 18408 37 100.0 34 ..................................... ATCATGTGAACGACGTGGTGAGGTGTGGGGAAGA 18479 37 100.0 34 ..................................... ATCCTTGGGTCATCTGGGGTAATGGCTGCATGGA 18550 37 100.0 36 ..................................... CCCGCTGCGGCTGCAATTCCGAGTGCTCCTAATAAT 18623 37 97.3 38 ............T........................ AAGAGGTTGTGGGCGATCGCTAAACCACTATCTCAAGA 18698 37 97.3 37 ............T........................ CTATTAATAGTTTCTGGTTTATGGATGCAGTATAAAG 18772 37 97.3 0 .............................G....... | ========== ====== ====== ====== ===================================== ==================================================================================================== ================== 35 37 99.8 37 ATTGCAATTTCACTTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTGTTTCTTACGATATTTCTGAGGATAAACGCCGTACTAAAATCCATAGTATCCTCAAATCCTATGGACAATGGGTGCAGTATAGTATTTTTGAATGTGAGTTAACTGATACTCAATATGCTAAATTGCTATCGCGTCTCAATAAACTCATAAAACCTGAAACCGACAGCATTCGCTTTTACTTCCTTTGTGCTTGCTGTTTTGGTAAAATAGAAAGAATCGGTGGTGAACAGCCCCGTGATCAGACGATTTTCTTCGCTTAATGCGCGGGGGGGTGGGTGTAAAAAATTCAATTTCTCAAAAAATGCCTGAAATCATGTCTACACAAGCTTTTCATGCAGTTCATGGAGTTCACCCATCCGCGCACCTTGCACAGCAGGAGTTTCAGCTATTTTACTCCTTGACACTTTTCTTGAAATGGATTATCATAAAGCCATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCAGCACCCCGCG # Right flank : CATGAATGCGTTATTCTTATTGGAATAATTCTTATTTAGGACTTAAGCACTTTATAAATTCACATTAATTCTTTTTCAATGAGTTCAATTAATTACAGAATACTACGAGATTGGCTAGGTTCTACATTAGATTCTTCAATTATATGGACATGATGGGGAAAATTAGGTAATTTTGGAAAATGCTGCACATTATCCCAACGTTTTCTTAAATTTTCCTTTTGTTCATCCATCCACTGATAACGATAACCAAGGGTTACAAAATGTCCCTCAATAATAGTAAAGGACTCTGCTATTTCTAAGAAATCATTATTTACTAAAGTTAATCTAGCACGGAAATAACCACGATCCAATAAAATTTTTTCTTCCACAATAGCGATTTTAATAATAATGCGGCTAGTAGCTAATTTAATTTTTACTGTATTAATATAATCTTGTATTTCCATTGTTTAACTAGCTATTAAATTCGTGTTTATCTGAATAGTATTTTGAGCATTAGTCCA # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 20364-20979 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSDP01000165.1 Aphanizomenon flos-aquae 2012/KM1/D3 spades_82_len_T:21029, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 20364 37 100.0 36 ..................................... CTAACTGCATCGCTGTACTAGCGAACCCCCGAAAAC 20437 37 97.3 35 ....................................G TTGAAATAACCCTAGGAAGCGATTACTTTTTTCGG 20509 37 100.0 32 ..................................... CCAAGCGTCAAAAGATCGCCAGGAATTTTAGC 20578 37 100.0 36 ..................................... CGAAAAAAGGTTCCGAATAACGACTCTTCAGAAACG 20651 37 100.0 38 ..................................... AAAACCACGCGTTTTTTCATCTGCGTGACTTAAGGAGA 20726 37 100.0 35 ..................................... GTTTCTTGCTCTCTTCATATAGATCCTCTAGTCTG 20798 37 97.3 36 ....................................T AACTGTTACAGAGCTTGGTCAACGTTCCGTCCATCG 20871 37 100.0 35 ..................................... GACAGGTTCTCTTAGTTGTTCCACAGTCCCAGTTG 20943 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 99.4 36 CTTTCCCGATTACTTCAAATCGGAATTAATGGAAACA # Left flank : GCTAAATGCTAGTCGTTGTTGTATATGATATTCCTGATGATAAAAGGCGCACGAAGTTATCCAATTTTCTAGAAGGTTATGGGCGAAGAGTTCAGTTTTCTGTGTTTGAGTGTTTTTTGAGTTTGGAGGAAATGCGACAACTTTATATAAATGTGAGAAAGTTAGTTAAACCGGCGGAGGATAGTGTGCGGTTTTATTGGATATCCCAAGAAGCTGTTGAGAGGGTGTTAATAATCGGTGGTGAAGCACCCCAACCACCTCCAAACTATTATGTCATCTAGGTTTGAGGCTATTTTAGGAGTTTTTTGTAACATGACTATCTACACACCTCAGCAAATCGCCGAAACCCCTATTCTTTCGTTGAGGTGTGTCGATGGCTTGCTGTGTAGGGGTTTGAGGTATGTGTTTGATTAATTTTTCGGCTGGGTGTACAATCTTTTTTAGAGGTGTGTCGATTTGCGGTCTGAAACCCTTACTGGGTCAGGGCTGCTAGACGAACT # Right flank : GTATTTCCACTTGTTGCAGCATTATACCTTTCCCGATTACTTCAAATCGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCCGATTACTTCAAATCGGAATTAATGGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //