Array 1 7505-8729 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCWZ01000021.1 Lactobacillus kefiranofaciens strain KR NODE_21_length_33018_cov_79.2682, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7505 36 100.0 30 .................................... TAAACTGTATTAACGTCATTATCCTTGAAA 7571 36 100.0 30 .................................... AAGCTCAATCATTTCTTGAAAATTGGCGTA 7637 36 100.0 30 .................................... CAAGGGATTTAGAACCGGATGGAGTGGCTT 7703 36 100.0 30 .................................... CAAACCTTGCAGGCTGGTTTACAGCACTTT 7769 36 100.0 30 .................................... ATTGATAGCGCCGGCGAGTGGGTTAATTAA 7835 36 100.0 30 .................................... ATCTCTTGAAGATAACTACAAAGAATGGCT 7901 36 100.0 30 .................................... TATTTTAATAGCGGAATTAATCGAATAGGT 7967 36 100.0 30 .................................... CACCGAGCATTGACCATTTCTGAAAATCGA 8033 36 100.0 30 .................................... CATCAATGTAGCCACCTGGCGAATTAATTT 8099 36 100.0 30 .................................... AAAGTAATTGCACAAGGTCATAATGAAGTA 8165 36 100.0 30 .................................... TCGTCAATTGATTAACTGGCTGATGCCTCC 8231 36 100.0 30 .................................... TACCTGCATAGCGATGAATAGCATACTTGA 8297 36 100.0 31 .................................... CCTAGGCACTTTTTCAATTGCAAAATTATAA 8364 36 100.0 30 .................................... AAATAATGCTTGCTGAAAAGATAGTACCAA 8430 36 100.0 30 .................................... GACTTCAAGGATTCACTGATAGACAGTTTG 8496 36 100.0 30 .................................... AGGCGTTAAGGATAAAAGGTATTAGCAGTA 8562 36 97.2 30 .....................G.............. ATGACGCAGTTGCTAAAATGCAGGATTTAA 8628 36 100.0 30 .................................... TTTTGGTAGTAAACCATGTCATGCTGAAAC 8694 36 91.7 0 ..............................C.A..A | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 99.4 30 GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Left flank : ACTGAAAATATAATTGAAAAATATATGTCGCATATTTTGAGAAGCTATATCCAAAAATTGGACGAAGAAAATCGAAATAAGATATTTTCCGCGTATCATAATTTAGAATCTTTATTGCAAGATTCTTTGTTGTTAGAGGACCTACCATTAGAAATTGATTTTAATGAAGATCTGAAAAAGTTACTAAAAGCAGAAAACTTACATTTAGATACTAAATTATTAAGGGAACCATATGTTATAATTGAATCGATTTTAGAGATTCATCAAATGTGTAAGATGGGTTCAGTTCCTGTGATATGTAATGTCGCTAATTACTTAAATTCACAGCGATTGCAAGAACTATCAAACTTAGTAAAGCAGATGAATATGAAACTTATTTTAATAGAATTCACAGATAAGGATTTTCTGATTGTTCCTAAGAATGCTGAATTCTTTTATATTGACGAGGACCTGGTTGATTGGTATTGATCATTAAATGAAAACTAGATTATAAAAAATCG # Right flank : ACACAAAATAAATTAGCTATTTACTGAGACTATATGTTTACAGACTTGTGTGATTAAAAAATTGGTAGGCTCTATTTCAGAATGATTATGTAGTAATACGTAATCATTCTTTTTTGAATGCGTCAAGTAAACTATTTTATTTAGTTATTGCTAAGTGTAGTAAATTACAATTTACTAATGTGAGATATTACAAAGGAATAGAGTTAAATATAATTTGAAGTTCTAATTTTTTAAGAAAGCTTAATCAGCTAGAATTGGTCTTAGATAATTCTTAAATTTTTGACATTAATATTCGTGTTCTGTCATCATTTTGCAAAATCTGAAGACTATAATGACGAATGGGATAGTAGAAAGGATCACATATTGAGGAAAAAGAACTTATCAATCACCCTAATTATTGGAGCATTGGCATTAGCTACACCACTAACAGTAAATACTAATTCGCAAATAGTTTTAGCGCAGAAGAGAAATGGCAACGCTAAAAAGACTAAATTGAGCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1542-2720 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCWZ01000036.1 Lactobacillus kefiranofaciens strain KR NODE_36_length_14557_cov_35.7247, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1542 29 96.6 32 ............................C GTTTATGGCACAACTGGCTAAAGGTGCTGGTA 1603 29 100.0 32 ............................. GATATTATTGTGTGGATGTATGATAAAAGCGG 1664 29 100.0 32 ............................. ACTTGCTTGCCGCTGCCATCCATTTCTGGAAT 1725 29 96.6 32 ............................C GTTTATGGCACAACTGGCTAAAGGTGCTGGTA 1786 29 100.0 32 ............................. GATATTATTGTGTGGATGTATGATAAAAGCGG 1847 29 100.0 32 ............................. TTTTCATCGATTTCTTCACTAATTTTTTGAAT 1908 29 96.6 32 ............................C AAAAAATTGATGCCTCGTGCAGAACGTGAGCC 1969 29 96.6 32 ............................C TTTAGCGCCGTACATCTTTGGGCTGGTAGTTG 2030 29 96.6 32 ........................C.... CACAAGATCAAACACGACGATAACCAACTACT 2091 29 100.0 32 ............................. GTTATTGGTGTTCTTAATTCGGCTATTGGCGA 2152 29 100.0 32 ............................. CACTTTGTTTAATCTGCTGAAATTGATTAATT 2213 29 96.6 32 ............................C GACCCCGATTAAAAAACCCGACAAGGACTTAA 2274 29 96.6 32 ............................C GACCCCGATTAAAAAACCCGACAAGGACTTAA 2335 29 96.6 32 ............................C GACCCCGATTAAAAAACCCGACAAGGACTTAA 2396 29 96.6 32 .....................A....... ACCGTGTTCCAAAACTTTACTAATCATTTAAC 2457 29 100.0 24 ............................. GTGGGTGCTGTTAACCCCAGTAGC Deletion [2510] 2510 29 96.6 32 ............................C TACTGCAGTCTTTTACATGGTTAATGAGTACG 2571 29 100.0 32 ............................. TGAAGTTGATTAGACACAGTACAGTCATTTAG 2632 29 96.6 32 ..G.......................... CAATGAAGTTACGCGCTATACTGATTTTATTC 2693 28 79.3 0 ..G...........T........-T..TA | ========== ====== ====== ====== ============================= ================================ ================== 20 29 97.1 32 GTATTCTCCACGTAGGTGGAGGTGATCCT # Left flank : GCTTATAATAAATATAGTCAATTATGGCATAGTATGTATCAAAGTAAAAAGGTAACTAAAGAAGCAATGGAAGCAGCACTTAATACTTTCATGCCGCTATATGAAAAGGCCCCACAAGAAATGCTAGTGGTTGATTCAATGGTTGATAGTTCTCTTGCTGCAATGCAATTTATGCTAGTTGCTCGTGAGCATGGCTATGAAACTAATGCAATGGCTGGATATGATGCTAAGAAGGCGGCAATTGTAATGGGGCTTGATCCTAAACAATATGTTCCAGTAATGGCAATTGCTATTGGTAAGCATGATCCAAAGGCTGAAGCAGAAATTACTACTACTAGATATTCTCTTGCTGATCTTGTTGATTATCAATAAAGTTTTGGAGTAGATTTTAAGTATTCTGTGTAGGGAATTGTAAATTAAGTTAATAATCTAGTTTAGAAAGTGAATAAAAATAAGAGTTTAGCTTTTCAGAAATGGCTTGATTACAAGGATTTTTTACT # Right flank : ATTCACATAAAAATATCCTCGACTGTAACACTGTAACTGTCGAGGATGTTCATTCTATCGGTCTTTGCTATCTATTAATTTGTAAAATGTCTTCCTTAGCATGAATCAGTTCAGTGACAAACTGGCAATATGGCGTAGCTACACTGTGTTTTAACCCTTTGCGCCAAACTGCACCATCAATATAATCGATTTCAGTTGGTCGATGGTTTTGAATTAAATCTTGATACATTGAAGGATAATGTGGAGTATCAAATAGGCTTTCTACATGTCTAATAACCTCGGCACGATCTAGATTGACACCTTCATACTGAGCGATATCAGCGAATTCTTGTACAATATGTCTAGTTAAAGTATCCGCTTCATTGGTATGACCATATTCTTTGCAACTAGCTCCCAGCAATGCGCATAAGGCATTAACTACACCGTTAACACAAGCTTTACGCCATATAGAATACATTACGTTTTCGCTATAACTTGCGTTTAAACCGGCATCATCTAAG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTAGGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //