Array 1 2250-989 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLN01000024.1 Porphyromonas gingivalis strain WW3039 NODE_24_length_31896_cov_17.5265_ID_25955, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 2249 46 100.0 30 .............................................. GACAGCCATGACAGGAAAATAATTTGCATG 2173 46 100.0 30 .............................................. AGATTTATAATAATATCTTTCTATAATACT 2097 46 100.0 30 .............................................. GGAACTTATTAAGCCCCGTAACATTCTGAT 2021 46 100.0 30 .............................................. CAACGGATTAGCGGGTATTCGTCTTCTTTT 1945 46 100.0 30 .............................................. GCTGATGTTTATCCAGCAGCCGGGTAATCT 1869 46 100.0 30 .............................................. TATCGTTCAAACAGTTCGATAAATTAAGTA 1793 46 100.0 30 .............................................. GAAGAGCAGTTTAAGCAATCATTCTCTCGT 1717 46 100.0 30 .............................................. TTTTGAAATTTTTTTTGTTTCCATTGTCTT 1641 46 100.0 30 .............................................. TGTCGCCGCAATCCACAACCTCAGCCTCGT 1565 46 100.0 30 .............................................. GAACTTCCGATTTCATATTCTTTTGTGTTT 1489 46 100.0 30 .............................................. ATTTTTTCTATTAAGTTGATTATCATTTGT 1413 46 100.0 29 .............................................. ATGTAAAAGGTAACCATATCTATAGAGAT 1338 46 100.0 30 .............................................. CAAGGACTTTGATTATATATGCGTTGAGAG 1262 46 100.0 30 .............................................. CACTATGATCGGAGTCGCAGCAGAGAGCGT 1186 46 100.0 30 .............................................. TTTCTATGTGAGGACGGGTATATCCCGCAA 1110 46 100.0 30 .............................................. CAAACATAAGGGATAATTTTCAACCCGCCA 1034 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 17 46 100.0 30 ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC # Left flank : ATCAAAAACGATTTATATATAAAATGAAAACGATTTGTATACAGATCGTTGTACGGCTTGTTTTAAGTGGAATTTAGATCTATGGCAGTTCCTTTTCCCTCCACTTTTACCTTGCTTTTCTCCTCTCTACAGATACTTATTTGGAATCGTTCCAAACTCGTCTTCGTTGTTGAAAACTTTTTTGGCGCATGATTTTTGAGCAGATTATTATTTTCGTGGTCTCCCTTTTTTCACAGGGAATAGCTTTCAGATTTAGTAATGTTGTTGCAACGCACAGCCGGCGAAATCTTTTATGATTAGTTTCTTGAGCTCTTGCAGATTCATAAACTTTGTTTATCTCTGTGGCAGATAAAGCTGGTTGGCGATGTGAGTACGGGGGAGTGTTATCCTGTTTCCTTGCCGATCAGCCTTTATTTTTTTTCGGGGAATGGCCCTTGTACAAAGTACGGCTCCTCCCATACCCTTCCCCCTTTGCTGATAACCTCAAACCCGAATCGGTA # Right flank : AGAATCCCCGTAATCACCTGTAATACAGGACATAGAGGGTGATTGTGAGTAAGAAAAAAACAACTGTGCGTAACTGAAAAGCCGAGATTTCTCTCGGCTTTTTAATTTCTATGCCCCAGACGAAAAGCGCTAATTTCGCAAAAGGAGACCTTTGCAAAATAAGGAGGTGGAGGGAAGAGGAGTTCTTCGCATAAAAGGAGCGAGTGAAAGGGGTGGCAGTAAGGAGTGAAAGTAGTTGTAAATCCCCCCTTTGAGGAGCTGCTTGCACGAGCTCCTCAAGGGTGGTTATGCCTTATCCTACGGATGAGGACATAATTATCCCCGGGGTTCTGTATAAATTAAAGGCGATGCTTTCAAGAATGTTTTGAGTATGGGTCTTGGCAAGTCCCCGGTATCGACATCGTCCGCCATGAAACCACCGGCGAATACTGCCAAAGGTGCGTTCGATGGTGCTCCGTATCGGACTGATTGCTTTGTTTCGTTTCTCTTCCTCGGTCAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 34579-33683 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLN01000002.1 Porphyromonas gingivalis strain WW3039 NODE_2_length_118698_cov_16.2296_ID_25911, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 34578 36 100.0 30 .................................... ATGAGTACCTTTCCTTGTTATTTTAGAGGT 34512 36 100.0 30 .................................... ATTGAACAGAACAAATATAGAATCTTCGGT 34446 36 100.0 30 .................................... CTTTGACATTTACAACTATTTCGGGCGATA 34380 36 100.0 30 .................................... GTTCCGTAAAATAAAAAGAATGATATGAGT 34314 36 100.0 30 .................................... TGCCCCACGTCCTGCCACGATTGAACGCCT 34248 36 100.0 30 .................................... TCTTCTTTATAGGTTCCTAATTTCGGTTCT 34182 36 100.0 30 .................................... ATTATATAGATAGTTGGGAATTACCCGCTG 34116 36 100.0 30 .................................... GACAAGCGAAAAGCCTTTCGAATTGAAGTA 34050 36 100.0 30 .................................... TCAAAGTATCTTTTATCCATAGACGAATCG 33984 36 100.0 31 .................................... CAAGCAACCGTCTACGTCTGCGGCATACTCC 33917 36 100.0 30 .................................... TGAGTTGTGCTCTTGCAAAAGCTATACTTT 33851 36 97.2 30 ..................................G. ATATAATATGTAATCCCGTTCGACCTTTAG 33785 36 100.0 31 .................................... TGGTTTTTCTCTTGTTGTTTCATCTTTTGTT 33718 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 99.8 30 GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Left flank : AAAGCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTGCACGAGTCGTCGAGCAGGGAGGGTAAGAGTGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATGCCTCTTATTTACCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCCTGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTCGG # Right flank : TATTATTCCGAAAGGAGAAAGAGGGGAAGTTGTGCTGTTGATGGGGAAGTATTCCTAAATTAGCGATCGCTAAAGTGATGGAAAATGGATAGGGGGATCGTGTTCGGAGGAGAGGGTTGTAGCCGACAGTGTTTGTGTGCAGCTATCCATTCGATCGGGAGGCCTTTCGTTCTCTTCCTTGGCTTTTGTCTGTAAATCTCGATTCTTTTAACTCATATAATTGTCTGTTCCTATCAAACGCTCTCATCTCCTTATCAGTGCTGCTTCATCGGGTGGTGGAAAGACTACTTTCACGCTCGGATTGCTACGATTGCTTCGAAGGCGCGGTCTCAAAGTGCAGCCTTTCAAATGCGGTCCCGACTATATCGATCCTAAGTATCACCGCCTTGCATGCGGAACGGAAACGGTGAATCTGGATGCTTTCATGATGAGCCGGGAGCATATCGCCGGACTCTATGATCGCTATGGCAGTGAAGCCGATGTTTCCATCGTAGAGGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 11902-12333 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLN01000006.1 Porphyromonas gingivalis strain WW3039 NODE_6_length_91006_cov_18.6852_ID_25919, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 11902 36 100.0 30 .................................... AAGAACTAAAATCGGCTTTGTCACTTCTAT 11968 36 100.0 30 .................................... GGTCAAGCACAGCGGCACAATAGCCATCGT 12034 36 100.0 30 .................................... AACGGACAATTATACTATCAAAAAAAGCGA 12100 36 100.0 30 .................................... TACTTATATATAGGTCAGCCGGGGGTTGCT 12166 36 100.0 30 .................................... AGGATGGAAGAAATGAAGAAGGGGTTTCCA 12232 36 100.0 30 .................................... TGTATAAAGATTTATCTGAATTAGATTATA 12298 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : ATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGGGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGACACCTCGAAAGGCCTTTAGGGGAGGTATAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAAGCTCTACCGCTCATACAGCAGGCTTGTATCAGCTATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAGGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAAAAAAGGAAAGCACTCCCCGGTACAAATTCACCGAAGAGGGGAGCACCTCGTCCGCCTGCAAATGTAGCGAAAAAGCCCCAACGCGAAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAATGGAATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAACCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //