Array 1 2033614-2034053 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019651.1 Paenibacillus larvae subsp. larvae strain ERIC_I chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 2033614 32 100.0 37 ................................ TATGACCGGGTATCTGCTGTTGCAGAAGCCGAAGGGT 2033683 32 96.9 36 ..................A............. ACGGTATGAATCGTAAGTCGCCTGACTCACGATATG 2033751 32 100.0 36 ................................ CGTTCTGTGGCCAGTGTCATATGGCGACAGGCGAAT 2033819 32 100.0 34 ................................ AAAAACCCCGATTATGTGGCGGCCGTCCGCACGC 2033885 32 100.0 34 ................................ CATGAAGTAATTGCAGTTTCGAACAACGCTAAAG 2033951 32 90.6 38 .........C.T.T.................. TATAGGTGTCACAATACCAGTCGTATCGTAAATTTCTA 2034021 32 90.6 0 .............T......A..........C | A [2034037] ========== ====== ====== ====== ================================ ====================================== ================== 7 32 96.9 36 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : GATTCAGAGGTTTTGGAGGTCTTATGAATGTTCCCAAAAAGCTTTTTTATATATTGCAATACCTAGTTCTTTTTATAAAAAAGCATTATCGACTTCATTTTTCAAAAAAAATGAGATTTTTCAGTGACGAATTTACTTATTACCTACTAACATTTGCAGAATGTTAAGCACATGCTTCACTTTGTCAGAAACTTTTTTTAAATGCGCGTTCCCTTTAACCATTTTTTGGTATCCACTATTCTTGAAATATGTTCTTCTTCTCCTTTTATTCATCTCCTACCTTTATAAAGTGAAGGAATTCAAAATCCTGCCTATTAGAACATGGATGCATAAAGTGTTTATTAAAGATGCGTTATTTGAGTTAAATGGAATCATCCTGATTCTAATCAACTTAGTCATATTATTAGAAATTAAGGTTTTAGCTATTCTCCTGTTGCTTTTTATTTCTCAGGCTTGGATGGGCTTTTTCCAGAGCGCGACGTGCGTCAATACGAGTCAAT # Right flank : CTTCCGATAAATCCTACTCAAAATGCTCTTTTTGGTTGTATTTGATTTTACTTAAAATGGACCGGCCTTGCCTAAAATAGGTTGCTTCAGTTTTCTGTTTTATCTCAGATCGAGCCGGCCACTTATGCTAGAAAAACGTTTTCACCTGAAGGGAAATTTATCAATTCAACATAAATCTTGAAAGACCTAAGTAGGGGATAGGACATGGTCTACAAACTGTTTCACAAATTATTATTTTGGAAAGAAAAAAGCCGAATAATCAGTTCCCCACTTTTACAACTCAAAGAACAAACCCGTCATATCCTTTTATACCTACAGTTTGAATAGCAGTTGAATCTATATGTGACTCTTCATATAACAAATCAATAAATTGACGAACCTCATGCACATTTATGTCATCACTGTTATTCTCAATTACATCTTCATTGTGTACATTATCCCCAATAATTAATAACCGTACCTGGTCTGGAAAGCCAAGGGCCCATTTCAGATAGTAGGGG # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2036301-2036666 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019651.1 Paenibacillus larvae subsp. larvae strain ERIC_I chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2036301 32 100.0 34 ................................ ACATCATCTGAAACACCCTCAGGAAACAATTCCT 2036367 32 100.0 36 ................................ AACAATTACAAATATGCAACTGAAGCAGATGTAAAT 2036435 32 100.0 37 ................................ CATCATCAAAATACAAACCGAATTGATTGCTATTCCC 2036504 32 100.0 34 ................................ GGATAATTTCCGAAAGGTTATTTTGGTTTTCAAT 2036570 32 100.0 32 ................................ CAATTAAGCCGACCGCCATATAGCGCGGCTAT 2036634 32 84.4 0 ...............A..AGT..A........ | C [2036662] ========== ====== ====== ====== ================================ ===================================== ================== 6 32 97.4 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : ATGCTAGTTTAACCATATTACATTTATTTTTTGAGGCATATTGACTAATAAATGAATAGGGAAGGTGATGGGAGGGCATTTGAATTGTGGAATTGGGTTTTCCATAGAGGTAAATATATGCCATGTTGGATATTTCTCGCGCTAGTAATGGAAGCTGATATGGGGTATTATGGAAGTGAAAAGGAGTGTACTTCTGTAATTGGACATTTGTAACTGACAAATGTTTTCATAAGCAGGTGATAGGGTAGATATTACGTCAATCGATATTAAGGCTAACGGGTGTAAAAGAAGTAATTGATTTGGAAGGTCTATTCATTTTCTAGTGCGAATGTATAGTGCACATGAAAATCCCGGGAGATTCGCACCATTATTTCACCAAAAATATACAAATATCTGGATATAGGTATATTTGATTGTAATAAATTTGAATCAAAAAATCATTGTTTGAATGATTTAATCAAAAAAATGTTCAATTTTGATTGTTTTGTTCAAATTTCGCT # Right flank : TAAAAACTAGAGGCTTTGACCACTATCAACTGTGCCGTGCGATCGGACGGAACGACGCGAAAAGGCATCCTATTTTGTGAACTGCACCCTGTCAAGTAGACAGTACAAATAATAAAAATTAGTTAAGCGGCCTTGATCCTGAATTCCATCGGACTAAGGCCGTTTAATTTCGCTTGTAATCGCTCGTAATTGTAAAAGTAAATGTAAGCCTCAATGTCCCTTTCGAGATCTTCAAAGGTATGGTAAGTATGCAAATAATACTTCTCACATTTTAGGGCTCCCCAGAAGGATTCCATGGGGCCATTATCGATACATCTGCCAACTTGAGACATGCTCTGCATGATGTTTCCTTTCTCCAGGATCTTTTTGAATTTTTGCGAGGTATATTGAAAGCCCCGGTCACTATGCAGCATGGGCCTGCTGCCCGATGCCGCTTGTATCGCCTTGTTGACGGTTTGAAACACGAGGCCATTATTGTTGGAGTGCCCGAAAACGTAAGA # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2970244-2969951 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019651.1 Paenibacillus larvae subsp. larvae strain ERIC_I chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2970243 31 100.0 33 ............................... ATTGCCCGCCGCGTGGGCGTCGTACCTGCCCTT 2970179 31 100.0 35 ............................... GCAGTAGCGACAGTGTATTCAGCAGTTATAAGTAG 2970113 31 100.0 35 ............................... TCACACAGCCCTCCTCAAATTATCCGCCCTTTGGC 2970047 31 100.0 35 ............................... GGAGATGAAAGCACTTTGTGAACAAAAAGAATTGG 2969981 31 93.5 0 ................A.............G | ========== ====== ====== ====== =============================== =================================== ================== 5 31 98.7 35 GTTTGACAGTAACACATGGTGTATTGAAACT # Left flank : ATTTATGCCATTTTTGGAGAAAGACCGGAGGTAGAAGGAATATGGCTAAAAATTATCATTACGTCATCCTTGTGTACGATATTGGTGAAAAACGGGTGGGCAAAGTATTCAAAATATGTAAGAGATACCTTGTTCACTTTCAGAAATCCGTATTTCGGGGCGAAATTACGCCCTCCAATTTACTGAAATTGAGAAACGATTTGAAGAAGGTTATAGATAAGGATAGCGACTTTATCGCTATTTTTAAAATGACGGGTGACTATGTATTTGATGAAGAAGTTATCGGTGTAAGATCGAACAATCAGGAGTCTTTACTCCTCTAATTTTCCCAACCTCTTTTGCACTATTACTTGGCTTCAGTCTTAGAACCATAAGGGACTTTCACTCATTTAGGTTCGTTTCCTTTTTAAATCCATTTCGGTTGGGAAAATTTTGCGAAACCCTTGGTACTGTAGTAAAATATGCACATATGGCTTTTGGAAAAGCTTGATTTTATTAGG # Right flank : GCTGTGGGTGAGCCTGTCAATCACATACTTTGGACTTCTGTTAATAGATTGGACACCTAAAACCGAGAGAATTATGCAGCTAAACAGATCATATGTTCGCATTGATTGGGCGTAAGATACCCGATAGAGGAATGGATTCTTTTTCCATTGTAAAAGCACGTAATGTACTCAAAAATCTTCTCCTTGGCTTCTTTCCTGGTTTTGAATTTGTGCAGGTAAACGAGTTCTTTTTTCAGCACGTTGTGGAACGATTCAATACAGGCGTTATCGTAGCAATTGCCCTTACGGCTCATGTTGCCCGTCATGCCGTATTGTCGTAGCTGCGTTTGATAGTCCGAGGACGCATACTGGCTACCGCGATCCGAATGATGCAACACGGTTCCTTTCGGCCGTTGATGGCGGTACGCCTGATCCAACGCCCTCAGGCAGAGCTCCCTGGTCATTCGCTCGCCCATGTGAAACCCGACGATCTTACGTGTGCACAGGTCTTCCAGACTGGC # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACAGTAACACATGGTGTATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 4 2980023-2979794 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019651.1 Paenibacillus larvae subsp. larvae strain ERIC_I chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2980022 30 100.0 36 .............................. TGGTGTGGGTGATTCCGTGTCCGTCCACCATTTGCC 2979956 30 100.0 36 .............................. GGAAAAGTATCAGGCAGACGAATACCGAATCATTCC 2979890 30 100.0 37 .............................. AGTTCTTCCATTTCCCAATACTCTTCCGTTTCCGTAT 2979823 30 83.3 0 ......A........A....A.......CT | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 95.8 37 GTTTGATAGTAACACGAGGTGTATTGAAAC # Left flank : ACTCTTTTACTCATCGATGTAGCATATTGGATGTTAGCTCGTAACGTCTTGCCACGGCTGCTTTGTTTCTGGTTTCCAGAGCTTCCTTTACAACCTGTACCTTAAACTCGTTGGAATATTTCGTCCGTCTCATTTATCATCCTACCCTATTACTTGTAGTATAAACAAAACACACTTTTATTGTCCAAGTTCATTAGGGGGCTTTAGAACTAGCTTCTAAACATGGTAAATGCTAAGAGATGTATAGATTTTTATTAATTCCTTTTAAGAACTCATTACATATATTCAAAAATAAGTAGAAGAATAAAAAGCTTTATCTCTAATTTTCCCAACCTCTTTTACAGTGGTATTCGTCTTCAGCCTTAGAACCATAAGGATTTTTGCTCATTTAAGTTCATTTTATTTTAAGGTATATTTCGGTTGGGAAAATTTTGCGAAACCCCTGGTACTGTAGTAAAATGTGGACATACGGCTTTTGGAAAAGCTTGATTTTACTAGGG # Right flank : TCGCAAGCTGTCTATCTCCACTTGGAGAGCACGGCTTGATAGTGCCATAAAAATAAATAGGCCATTCCCATTGGGACTGGCCTATTTTACTTACATTAATAGAGTAAATCTCTTTAAACAAATAAATAATGAAAATTTTATTTACAAATCAATTTTGTTTGGTATAATTTAGGGGGTTGATAATTAGAAGAACGTCCTACGTTACGGTTAGAGTTTAAGCAAATGAATAAATTTAAATGCGCCTTGCGCTAGGGTCCTCTTATTTTTTGATGTTTACTGTACTAGTGTACTATTTATTGGAATCCCTTTCAATACTAAAAATTTCTCAACAAAGGAGGTGAAAGAGATGTTTTACGAACTTAAAGCAACCGTGCTATTAAAACAAGAGGTCCATTACTTGCATGTACCGGAGCGAATTGGTTCCTGGATTAGCCGGGCGGCTCTAAATGATCCGGTATTAAAGCAGGAGCATTACTCGACAGGGTATAAGCACATTGTTT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:0, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGATAGTAACACGAGGTGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //