Array 1 119605-119802 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYLN01000005.1 Staphylococcus aureus strain MSSA, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================= ================== 119605 27 92.6 29 .A.....................C... AGCTGACAGAAAGTCAGCTTACAATAATG 119661 27 100.0 28 ........................... GAATTTCAAAAAGAAATTCTACAGACAA 119716 27 96.3 29 .......................C... AGGTGACGAAAAGTCAGCATACAATAATG GGAA [119726] 119776 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ============================= ================== 4 27 97.2 29 TGCAAGTTGGCGGGGCCCCAACATAGA # Left flank : AGCACTTTGAAATCGATCCTGTAGGACCAAAATATTTTGGGGAAGTAGCAAAATATTATCGCCATAAGGATAATGGTGTTCAATTTGGTTTGATTACAAGTGTTTCACAATCATTTTGTTCTACATGTACACGCGCAAGGCTGTCATCAGATGGGAAGTTTTACGGATGTTTATTTGCAACTGTCGATGGATTTAACGTTAAAGCGTTTATTCGTTCTGGCGTGACCGACGAAGAATTAAAAGAACAATTTAAAGCTTTATGGCAAATAAGAGATGATCGATATTCAGATGAGAGAACTGCTCAAACAGTTGCCAATCGTCAACGTAAAAAGATAAACATGAATTATATTGGTGGTTAATGTGTAGGGACCACTACATATTAAATCATTAGAGATGTTTTAATATTTCTGTCTTACTCCCTAAAATACAATATTATTTATTAAAGTAAAAACGGTCATATCTATGCCAGATTTAATAGAAATGATCGTTTTTAAAGTTTT # Right flank : AGAATTTCAAAAGAAATTCTACAGACAATGCAAGTTGGGGATCAACGAAATAAATTTTATGAGAATATCATTTCTATCCCACTCTTAAGAATCACTACATAATAAATCTTTAGTGGTTCTTTAACATTGATGTCACACTCCATGCCATTGAGTTGTAATATATCTTTTTTAGGTATAAATGTTGTCGAATAAACAACAAGTTGTCCAAAAGATATAAATCTAAACAAGATATAGCCAGCAATTTAATATTTGTAATAGATAAAATGCTAAGTTTGATATATAATAAATTTAAGTAATTGTATAATAATATGAATTACAAACATCTAAGAAGAAACATAGGAGGCATCATATTATGAGTAATAAAGTTCAACGTTTTATAGAAGCAGAAAGGGAGTTAAGTCAGTTAAAGCACTGGTTAAAAACAACACATAAGATTTCAATTGAAGAATTTGTAGTCCTTTTTAAAGTGTATGAAGCTGAAAAGATTAGCGGTAAAGAAT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCAAGTTGGCGGGGCCCCAACATAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 599122-598872 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYLN01000001.1 Staphylococcus aureus strain MSSA, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================== ================== 599121 26 100.0 30 .......................... TTGTCTGTAGAAATTGGGAATCCAATTTCA 599065 26 100.0 30 .......................... TTGTCTGTAGAAATTGGGAATCCAATTTCA 599009 26 100.0 28 .......................... TTATTGTAAGCTGACTTTTCGTCAGCTT 598953 26 92.3 29 ..G............C.......... TTGTCTGTAGAATTTCTTTTTGAAATTCT A [598939] 598897 26 73.1 0 ..................T.TAATTG | ========== ====== ====== ====== ========================== ============================== ================== 5 26 93.1 30 CTATGTTGGGGCCCCGCCAACTTGCA # Left flank : CTTTTTGTGCAATACAAAGATAAACTACAAACGATTATTGGTGCGCATAAAATATACCAAGGCAATAAACCAGTATTAACATTGAAAGAAATCGATTTCCGTGCACGAGAAGCGTTAATAAAAAATAAAATATTATATAACGAAAATCGTAATAAAGGTAAGCTTAAGATCACCGGTGGCGGTAATAACTACACTATTGATTTAAGCAAAAGATTACATTCAGATCTAGCAAATGTTTATGTTAAAAATCCTAATAAAATAACTGTTGACGTCCTCTTTGATTAGTATATGAAGGTGACTTATACTTCATGCACTTTAATTCCAAATCAGATTATTTAAATGATAATTTTTAAAGTGTATGATGTATATAATAGGTAAAATTTTCTATATATTTAAATGGAATTGGGAGTAGGAATGTGACAGAAATAGTATTTTATAAAATTTATTTCGTTGTCACTCCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTT # Right flank : AAAAATGCTTGTTACATGGGCATTTTCATTCGGTCAACTACTACCAATATAATATTGTAGAGCCTAAGACATTGATTTATTATGTCTTAGGCTCTATTCCTTCATTTAATGATTAAATTATTATAGCAATACTTTATTGTCCCATGATTAGTGTTCTTTTAATGAGACATAGTAACTATAAAGTTTAATAATCGTTCTAAATCTAGCATCTTCTAGTTTGGTTTTCCCATTTCTTAAATCTTGTACTGTTTGATATGGAACTCCTGAATTTTTCGAAATTTTATAGCCTGATTCAGACTCAAACAAAGATTGAAGAGAGTTTATAATATTATTCAACTCTGTCATTTTTAATCCCCTTTCTTGAATTAACAATATACAATGTTGTTATTAAAACAGTCAGTGTATGGATGATTTCATTTCCTAAAAATATATTCAGCCATATAATAATAAGAAATACGATATAAAATAGTTTCATTTTAATCCCCTATCATATTTTTATT # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATGTTGGGGCCCCGCCAACTTGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //