Array 1 5323-6204 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCUD02000025.1 Salmonella enterica subsp. enterica serovar London strain HIY0240 NODE_25_length_44400_cov_29.802453, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5323 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 5384 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 5445 29 100.0 32 ............................. CTTCCAGTTTTTTCCCTGCCTTTTGGGCGGCG 5506 29 100.0 32 ............................. TACCTGACGCTGATCCAGTCGATCGCGCTGCT 5567 29 100.0 32 ............................. ATTTTCTTTGCGCCCGTACTCAACGTGGGAGG 5628 29 96.6 32 ............................A TCGCCCCGAGGTCGTTCACGACGTCCTCGTGC 5689 29 100.0 32 ............................. CGTTACTCCAGACAATAGAGCGCCTCACCACT 5750 29 100.0 32 ............................. CATAGGGGCCGCAGAAGTTGCCACAACCACAA 5811 29 100.0 32 ............................. GGGTCAATGTTGATGCCGGGGTGTGTTGTTAC 5872 29 100.0 32 ............................. GGAACTCATGCTTTTACCTGATGCGGCGGCAC 5933 29 96.6 32 ..........T.................. CGAGGCGGCATCAAAGACGACGAAACACCATG 5994 29 100.0 32 ............................. GATTTTCCCGCGTTGGTTGTATGCCGTGCGTG 6055 29 100.0 32 ............................. CGCGTATTAAACGGGCAGATCGAGGAAACAAC 6116 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 6177 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGTGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 15612-16862 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCUD02000025.1 Salmonella enterica subsp. enterica serovar London strain HIY0240 NODE_25_length_44400_cov_29.802453, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15612 29 96.6 32 ...........................T. CCAGCGGAGAGCGAGCTATACCAGGCTCAATC 15673 29 96.6 32 ...........................T. TCCGGAAAATCTACCGTTCCAGGGCGGGGCCG 15734 29 96.6 32 ...........................T. GGAACCAAGTATACGCGTAGACAGCGTCAACG 15795 29 100.0 32 ............................. GAATTGGCGTATCTGTGTCTTGCCAGACAGGG 15856 29 100.0 32 ............................. CGTAGACCACCTCTTTCGATATGTGAGTGAAG 15917 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 15978 29 100.0 32 ............................. ACATAATCCCCATGTACATAATTTATGCTCCG 16039 29 100.0 32 ............................. ATCCAGCAGAGCTACAGGAACGCCGCAAGGCC 16100 29 100.0 32 ............................. TTGATCCGGGCATTTGAATATTGGGCTAAAGA 16161 29 100.0 32 ............................. TTAAATGCATCGCGATCCCTTGCAATTATAAC 16222 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 16283 29 100.0 33 ............................. GGCACGTTTACCGTTCCGGCTGGGGTTTATCGT 16345 29 100.0 32 ............................. GGCGGATCCACGATAATTTTGTCGTTATGTAT 16406 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 16467 29 100.0 32 ............................. GCGCTATTGTATATCGACCATAAACATCGGCT 16528 29 100.0 32 ............................. TCCCTGCTGGCCGTTCTGGAATTGCGTAGCGC 16589 29 100.0 32 ............................. CCGGAGCCTGACCAGGATTTTTCCGCCGTGTA 16650 29 100.0 32 ............................. GAATTGCAGGAGTGGTTTATCGAGTGTTTACA 16711 29 100.0 32 ............................. AATCAACGGATCTTGCTAATGTAGTTTCTGCA 16772 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 16833 29 93.1 0 A...........T................ | A [16859] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCTGGTTTGCCGACAGCAATAAAAAAGCGTTGTTGGCGGAGGTTGGTGTAGGCACGTTGGATCAGGCGATGATGGCGGTAATGCCATTTAAACATAACAACCTGCGGTTACTGGGTCTTAGCAACAAGATTTTACTGGCGGATGAGATCCATGCCTGTGATGCATGGATGTCCCGAATACTTGAAGGTTTGATCGAACGGCAGGCCAGTAATGGCAACGCCACTATTCTGTTATCTGCGACGCTATCGCAGCAGCAGCGAGATAAGCTGGTGGCGGCATTTTCCCGTGGGGTGAGGCGTAGTGTGCAGGCGCCGTTGCTAGGCCATGACGATTATCCCTGGCTGACTCAGGTCACACAAACAGAGCTGATTTCTCAGCGGGTTGATACACGCAAAGAGGTTGAGCGTAGCGTAGATATTGGCTGGCTACATAGTGAAGAGTCGTGTCTTGAACGTATAGGTGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATAC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //