Array 1 273167-275311 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJMH01000001.1 Brevibacillus parabrevis strain NBRC 12334 sequence001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 273167 32 100.0 33 ................................ ACCATGGAGACCGAATTGAACTCAATCGACGGA 273232 32 100.0 35 ................................ TAATGAAGTCCCGAGCCAAGTCTAATGCGTTTTTC 273299 32 100.0 33 ................................ CCAAAGGCCCATGCCCTCAATCAGTATGCGAAC 273364 32 100.0 33 ................................ GAATGGTACTGAACACCAATGTTGAAGTGGTTT 273429 32 100.0 34 ................................ TCCTGCCTGCAGACAAAGGTATGATTACTTCTGG 273495 32 100.0 33 ................................ ATTCATGGCGCCGGAACATGACGCGAACCCGGA 273560 32 100.0 34 ................................ CCTGTTCATTTTTTGCTGTTGTCCACGAATACCC 273626 32 100.0 34 ................................ AAGAACACCTTGGAACGGATCACCGTTTTCGTCG 273692 32 100.0 35 ................................ ACTCCTCATACCTCCCAAACACGATAGCTTCCATC 273759 32 100.0 34 ................................ ACCGGGCAATCGAGGCAAAGGCTGATGTGGAGAG 273825 32 100.0 33 ................................ TTCTGCAAAATAGTCTTCTAGGTAAACACCCAA 273890 32 100.0 33 ................................ TTCTCAACCAAGATGATGTGACTCTTACCTTTC 273955 32 100.0 34 ................................ CAGTATGTCATGACGCTTTTGCCAAGCATCGGGC 274021 32 100.0 34 ................................ GAGTTTACAACTCTCTACGACATTGCCGTCCTCG 274087 32 100.0 35 ................................ TCTTCAAAGTACCCGGCCAGCACGCGGCTGCCTTT 274154 32 100.0 35 ................................ ATCAATAAATTCAAAGATGGAAATGTCGCGTAAGG 274221 32 100.0 33 ................................ AACCCGAACGGCTCCAAGGCTTGGGAAAAAACA 274286 32 100.0 33 ................................ CAGAACCCACGAAATCGGTTTGACCAGGAACGA 274351 32 100.0 35 ................................ GCCAGCTCTTGAATTGTCGTGCGGAAAACTTTTGT 274418 32 100.0 33 ................................ TGTTTCTAACATACCGTCCTGATCGGAGTAGAC 274483 32 100.0 35 ................................ CTTTTAAGGAGTGGGAATGTTGAGGCGGTTCTATG 274550 32 100.0 34 ................................ ACTTCTTCCGATGATTTTCCTTGTAGGTCTTGCC 274616 32 100.0 34 ................................ CACATATCAAAATAACGACTCCCGAAATCGTTAC 274682 32 100.0 35 ................................ TATCAAAAAACGTTTAGGGGGTTCTCGTCATGTTG 274749 32 100.0 34 ................................ TCCGGTCTATGAAATCACTTACGAGAAGGCGCCG 274815 32 100.0 34 ................................ GTTCCCAATCCTTATAAAACAATTAAATGCCCTG 274881 32 100.0 36 ................................ AGTGGCAAATGCAGCAGGAGCAGGACGGGGCTATCC 274949 32 100.0 36 ................................ GATAAAGATTTTCTCGAGCACCATATTGTCAATATT 275017 32 100.0 34 ................................ AAGCTCGTTACAAAGAAAAGGCCGCCCGCGGCGA 275083 32 100.0 32 ................................ CCAAGTGCTTGGGAATTTGCGTCTTGGATCGC 275147 32 100.0 34 ................................ TAATTTGAAGATTCAGATACTTGGACCAGATAAG 275213 32 100.0 35 ................................ GGTCATGCCGTTCCCTCCTCTACAACCGCCTTCGC 275280 30 84.4 0 .......................A.C..G.-- | TT [275304] Deletion [275310] ========== ====== ====== ====== ================================ ==================================== ================== 33 32 99.5 34 GTCGCCTGTCGTAGGCAGGCGTGGATTGAAAC # Left flank : TTCTGGAAGTAGGAGTGATGTGGGATGATGGTGTTAATTACTTACGATGTGAATACAACCTCTGCTGATGGGCAAAGACGCTTGAGACAGGTTGCCAAAACATGCGAGGACTACGGTCAGCGAGTGCAAAATTCGGTGTTTGAATGTTTGATTGATTCGCAGCAGCTGAAGGAATTGCAGATTAAGCTGAAAAAGACTATAGATCCGGAGATGGACAGCTTGCGCTTCTATCGGATTGGGAGTAATTGGAAAGGTAAGGTTGAACATGTTGGCGCTAAACAAGGGTATGATCCAGAGGGGTTTTTGATGATTTAGCAGTGGATATGGCATTTGCGAACACTAGGCTCACATCGATTTTCAGGGAGGTTCGCAAATGCCTGCCGTTGCTGGGATTCGAGGTGTTTTTGGTATATGCTGCTGCGTATTATGCGACCGTATAAACGAGGTTCGCGGAAATCGCGTGAAATCCCTAGTCAGGACAAAGCTTCCTAGGTATTGCA # Right flank : AGAATTTGAGGACCTGTTTAGGGCAGTGACACCTGACTCTGGTGGAAGTCCGAACTGGTCAGATGTACTACCAAATACAGAGAAGTTAGCTCAGCTAGTAGACATAGGCCGGTAGTTTGATCTCAATAGTTCACCATTTAACTACGGAAACGGCAGTAATGCTGTTTTACATTTTGTTCATCGCCAATTTTTTGCTTGATCCTAGACTTTTCTGGAAAGTGTACCTGCTTTTTGGGATGGGAAGCTATGGTTGCTCTACATTAACACTCTACTGTATAGCAAAGATGGCTGCGATGCTACTAAGTAGCATATCAATAATGGTTTAGTCCTCGATGTATTGGCAGGAAAGAAGTAGAAGAGCAATTTTCGAATTCTAAATGTAAGATAGTTAATATACGCATTGATATGTATTTTTATTTCATCAACTAACAATCCCATTCTTATACGCCCTCCCAAGTGGGAAAAATCGAGATACCATCACATTATAGCTGCTTATGTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTGTCGTAGGCAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 1 43353-42868 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJMH01000019.1 Brevibacillus parabrevis strain NBRC 12334 sequence019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 43352 37 100.0 40 ..................................... TTATGAGGCAGGTAAACTCGTACCTTATCATGCGACTGTC 43275 37 100.0 37 ..................................... CCTAGGTCGTTCGTTTACCTTCGAAGAACTTGTCCAA 43201 37 100.0 37 ..................................... TAAAATTAGGATTAAGCATTGGTATGACTGACTTTTT 43127 37 100.0 36 ..................................... TACGTGGTGATTGTTGACGGTCAAATGGGGAGTTAC 43054 37 97.3 38 ......................C.............. CATGCCTTCCACCCGCCGACAAAATTCAGCGGCGCGAC 42979 37 81.1 37 .......C.A........A...CA..C...A...... TAAGGCTCTTGCATTTTTGTTCGTATTTGGTTATCTC T [42947] 42904 37 67.6 0 ....T...AC.A.T....A..AAC..AA.....T... | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 92.3 38 GTTACATTGGAGACCCGAGAAGTTAGGGGACTGAAAC # Left flank : AGCTGGAGAAACTCGTAGGGAACGCGAGTGCAACTGAGCGAGGGACTTGCTGCACATGAGCCGTTTTCAGTATGGACGGTTGTGTGCAGTTTTTTTGTGGGATTGTAGCGGAATGGAATGAAGTGGTCTGTTCACGCAGGGGGGATTTGTACGGGAGCGGACTTGCCGTATTAAAGGAGAGTGATTTGTTTGGGGAGTTGGATGAAGGAAGTGGCGGTTGAAAGATATTTGCGTTTGTGGATGAAAAGTTGTTTGGGTGCTGGATCGTGTAAAGAAATGGATAGATGGGATGGGGGATAATGTTTTATTATAAGTATGAGGGCGAATGGTTACCCTGTAGCGAGGAAAAAGAAATGAACAAGATGCGTACAGCCGATTTTCGAGGATAGGGCGTGATTTTTGACGAGAAGTGAATCCTCGAAAAAAGAGCGGGTTCTTGTTGGCAGTGAGTATGAGGAAAGCCTTGGCGTTATTGAGGTTAAGCATGGTAGTCAAAGTCG # Right flank : TAAGCTGGCCTTGCCTGCTCGCGATGCTCCGACAACAAAAGATGCTAGAGAAAGTAGATTTGATGGAAAAGATGGAAAAACTTATAAAAGACGCGAAAAAAGCTGCACGAGAGACTTGCTGCACATAAACCGTTTTCAATATGGACGGTTGTGTGCAGTTTTTTTGTGGGGATTGTAACAAAATACAAGCTACATCGTCTTACTAATGAAGCCTTAAACATAAATGGAAAAAAATGTTGAAAATAGAAAAATTAAAGATTAATATGCAAAAAATTTCAAAATATTTTTAGCGAGGGGTATTGTTGAATAGAAAGCTTGTAGCAAGTTTTATTACTTCTTGCGTTGTTCTGGCGACAATCACTACTGCATTCGCAGCTACTCCGATGGGGATAGCACAATCAGAAGCGTCAATCAGTGGAAATCTGTCTACGGCAGGGGGAGAAAAACATTATGTAATATCTTCGTATGGTATTACGCGTGATATCTCCTCTAGAGTAAAA # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTGGAGACCCGAGAAGTTAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 648-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJMH01000012.1 Brevibacillus parabrevis strain NBRC 12334 sequence012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 647 37 100.0 37 ..................................... ATGTTTCAAGCCAGCATGCTCGAAAAATGTTCTACTG 573 37 100.0 36 ..................................... AGCCCATAAATGGCAGCAGGAATCAGTGCGAACGGC 500 37 100.0 36 ..................................... CGTAAAACCACCAGCAGAATTACCGAAGCCTGGAAC 427 37 100.0 39 ..................................... CAGGGCAAGGTGGAGGAGAACCTCAAGGCGACGCAGGAG 351 37 100.0 37 ..................................... TAACGTCCAAAATATCAGTGACGTAAAACAGGTCTTG 277 37 100.0 38 ..................................... AGGTTTGAACGCGCTATGGAAAACGCGCTTGAGAACAC 202 37 100.0 36 ..................................... TTCATCACGTAAACAAAGAAAAAAACAAATCGAAAT 129 37 100.0 38 ..................................... CTAAAAAGCCCCTTAGACACGTTTTGAACGTAATGGGG 54 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 100.0 37 GTTACATTGAGGACCCGAGGAACGAGGGGACTGAAAC # Left flank : ACATGGGACCCAAGGCAACCTTTGAAAGCATCAGTTCTTTTGATGGTACGAGTGCAAAGATGGGACGAGACCGAGTTATGAAAACAGTGTTTATTCCGTATCACCAAAAGCGGGCAAGCAGGGATTTTACTTGGTATACGCGTGAAGAGAGTTAAGTGGTTTGGTTGGAGCAGGGGCAGAAGACAGAAGGCTGCCCCTCCCCTTTTAGGTGAAGAGATTGGTTGTGGTGTTGTTGTCAGGAAAAGATGGAAGGGTCTTATAAAAATGGGGAAAATGATTTATTATTGACATGAGAGTACATTGTTATGCAGAAGAAAGTGAATACTAAGGCTAGGTATTAGGGGTAGCGGAAAAGCAATACAGACGAAAAAAGGGATTTTCGAGGATCGAGCGTGTTTTTTGGCAGAAATGCAATCCTCGAAAAAAGTGAGGAATGCTTAGGGCTGTGAACGCGTGTAAAGCCTTGGTATTACTGAGTTTAGTTGTGCCGATCGAGGTCG # Right flank : CTCCCGTTGTTATCAAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTGAGGACCCGAGGAACGAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 2 17504-16879 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJMH01000012.1 Brevibacillus parabrevis strain NBRC 12334 sequence012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 17503 37 100.0 36 ..................................... CCCCTGTGGTTAGTTTAACAATATCAGAGAAATGCC 17430 37 100.0 36 ..................................... CTTTCCGATTGCAACTGCAAACTGGGGAACTGTCTC 17357 37 100.0 38 ..................................... TTTTCTTGCCGACACCGATGAAACTCCGCGCCGGAATT 17282 37 100.0 36 ..................................... ATGTAGTTGAGGTCCAACTCAGCGCGGTGTACACGG 17209 37 100.0 37 ..................................... CGGTGAGGATGAGGACTCTAGGGAACACTGGAGTTCT 17135 37 100.0 37 ..................................... AGCTAGGGAGGTATTCGGCTACTATGGCGAGTAAGAA 17061 37 100.0 36 ..................................... TTGAATCGTTTATTATCAAATATTTTAGATTTACTG 16988 37 100.0 36 ..................................... CGTGTTCCTCGATCCGCCGCAGCAGTGGGCAGTATC 16915 37 83.8 0 ................A....A....AAA...A.... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 98.2 37 GTTACATTACAGACCCGAAAAGCAAGGGGACTGAAAC # Left flank : TCTAAACGGCGTGGAATTTCGGTTTTGGATACAAGCTTCACGTTGTACTTGTCCGAAGGTTTTGTGAGCTGATTTTTTATGTATAAATCATTTCGAAAATTGGAAAGAGGGTAATCCCGCCATCGTGGAGAAGCAATATTAGGGAAATGCGAATGTATCTTGTATCTAAAGGTAATATAGAGAAACTGTAACTGGCTTTGCTCCAGAGTTACTTTACAAACTAAACTATCGTTTACTACTGGACAGACGACAATTCGACTTAGCGAACCTCATAAACCTATAGCTGAAAGTAGAGCAATGTTTTATTATAGACAGGAGAGAGAATGGTTATCCTCTGGCGGGGGAAAATAGACGATATGGGGTACTCAAATGTAGACTTTCGAGGATAGGCTGGATTTTTTAACAGGAAATCAATCCTCGAAAAAAGAACGATCTCTTGTTAGTGTTGAGATTAAGACAACCCTTGGTAGAAGTTGATTCGTTTGCGTTAACCGAGGTCG # Right flank : CGATAGACTGATAAGCGTAGCAGCAGCCGAGTGCCAAGTGCCGAGGAGACTGAAGCACTGCTCGATCATATGTCCAACCAGTTCTTTTTTCCGATTGCATGAAAAACCCGAAACCCTAGAGACCCCGACTCGAAGTCGAGCGGTTGCCTCAAGTACATTTAGTTTTTGCCCGACCTTTACGCTGATCAACGAGGGAATTGTCTAAATTGCACGCCAATAAACCGTAAAACCACTCCCTTATCTTTTGATCGCGCCTTCCCCAATACCTGAGCAATCTGTATAAACCGATATGCATGAATCGCTTCTCAAAAAATCAGCATCTCATAACTATCAGCACTCTCCCAACATTAAACTCTCTGCCTTTACTCATGCAGAGAGTTTTTGTTTTTCTCAGATGCCGTTTACTCCATCAATTTTCGGACGAGACTGAATCTATCCTACTAAATGCTAAATGGGGGTGGATGTTTGTGCAGGTAGTAATTGATGAATACGGATACGCC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTACAGACCCGAAAAGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 19224-18223 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJMH01000012.1 Brevibacillus parabrevis strain NBRC 12334 sequence012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 19223 37 100.0 37 ..................................... GGCGTGAACGACGAACCGTTAAAAGAAAATAAAGAAG 19149 37 100.0 36 ..................................... TCAGGAAGCGCCAAACAAATCGTAAATTGCCGTTGT 19076 37 100.0 38 ..................................... TTGGTGTAAAGCCTGCATCAATCAAACGACGATAATTA 19001 37 100.0 37 ..................................... CAGGGGCCGCTTTCAGCAAGTCGCTGATCGAAACGCC 18927 37 100.0 38 ..................................... TCGAAGATCGAGCGGAGCGAAGAGAAGTCGATTTCGTC 18852 37 100.0 39 ..................................... GCTGGTTGTCAATAGGAAAGGAGAGAATATCTAATCTAG 18776 37 100.0 37 ..................................... GTAGAAGTGAATATGAGTGGAGAAGTTGACTTTGACA 18702 37 100.0 37 ..................................... TCACTTCTTTCTCCACTTTTGGTGGAGCTGGAACTTT 18628 37 100.0 39 ..................................... CAGGGTAACTCTTTGGAATCGTTTATGGTAATTACCACT 18552 37 100.0 34 ..................................... AGCTCGTCCTTACACACAAATACCGCATTTCCTC 18481 37 100.0 38 ..................................... CGGAGACATTAGAATGGCAAGGTGCGTGGCCTTGGGTA 18406 37 100.0 36 ..................................... TTTGTTTTAATCATGCAATCGATGCCTTTACTCATC 18333 37 97.3 37 .............T....................... CTTTGCCTGCATTGCTTTGATCAGTTCCTGGTTGCGC 18259 37 97.3 0 ......................C.............. | ========== ====== ====== ====== ===================================== ======================================= ================== 14 37 99.6 37 GTTACATTGAAGACCCGAGAAGTTAGGGGACTGAAAC # Left flank : ACATCTCCTTTATAGAGCATCTCCGTAGAAAATCCAGGGTTTTTTTAGGGGGAAATGAATGAAATTAATTGCAGTACCACTTAATGGTATCATTTTACAGTTGTTTTGCAAATACCACTTTCTTCCTAAAATCAACAAAAGGGCTTGCTCCAAATGTAAGAGGCAAAACTTGAACAATAAATCGAATTGATCTATGGAAAGGGTTGGATAATATTAGATGTTTGAGTAATTTTATGTTAGTGAATGAAAAAGTCTTGTTGGTCCAGACCGTACAAAGAAATGGGTAGATGAGATGGAGGATAATGTTTTATTATAGGCATGAGAGCGAATGCTTACTCTTTGGCGGGGAAAAATAAACAAGATGAGAATAAGCTGATTTTCGAGGATAGGCTGCGATTTTTGACAGAAAATGAATCCTCGAAAAAAGAGCAACTTCTTGTTGGCATTGAGTAGGAGGAAAGCCTTGTCGTGACTGGGGTTAAGCATGTTAGTCAAAGTCG # Right flank : AGCGCGATCATCAAACCCGCTACGATGACGGTTTCAAGTTAGATCCAAGCTCCGAAGAACAGGAGATAGATGGATTGCAAAGAAGGGAATATCAAATCAGTTCGAGGGGAAACAGGTATCCATTACAATGAGCTGACTTCATGGAACGAAAGATACTGAGCATCTCTAGAATTTTAAATTTTTTGATCTTTCATCAGATAAACAAAATAACGAATTGCTTCTAAACGGCGTGGAATTTCGGTTTTGGATACAAGCTTCACGTTGTACTTGTCCGAAGGTTTTGTGAGCTGATTTTTTATGTATAAATCATTTCGAAAATTGGAAAGAGGGTAATCCCGCCATCGTGGAGAAGCAATATTAGGGAAATGCGAATGTATCTTGTATCTAAAGGTAATATAGAGAAACTGTAACTGGCTTTGCTCCAGAGTTACTTTACAAACTAAACTATCGTTTACTACTGGACAGACGACAATTCGACTTAGCGAACCTCATAAACCTAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTGAAGACCCGAGAAGTTAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 4 23044-22635 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJMH01000012.1 Brevibacillus parabrevis strain NBRC 12334 sequence012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 23043 38 100.0 36 ...................................... AGGCGCAACAACGGAGCCAAGCGCTGCTCCGGCGAT 22969 38 100.0 36 ...................................... TAAATCCAATAACGTATGGGAATGCGCGTGCGGCGA 22895 38 100.0 37 ...................................... TGTTTGTGACACCGACTATTTTTTTATAGTAAGTAAG 22820 38 97.4 36 A..................................... TGTCAAGAAGACGGGGTGGGCTTTTTGATTCTCAGT 22746 38 100.0 36 ...................................... AGGCAAGAACGTGGGAGTCGCAAAACGACTCAACCT 22672 38 92.1 0 ............................A.C......A | ========== ====== ====== ====== ====================================== ===================================== ================== 6 38 98.2 36 GGTTACATTGAAGACCCGAAAAGTTAGGGGACTGAAAC # Left flank : TGGAGCAGGGCCGGATTTCCACCGCTGTCCGGTGACGTATCAAGGTCATGAGACACTGATTCTCAACCGTGGCATTGAAAAAAGAATGTTAACAAGAAAGACACGGAATGGATCTTCCGTGTCTTTTAATAATCAGTTGTATTGCAACGGACCAGATAGCGAGTGGTCCTGAAATGTCCGGCTTTCCAGGTTGCAGGAGGATATTGTTTGTTTTTGCGATTGCAATCTTTAGTTCTCGATTAGATAGCTCTTTTAGTATTGGGCAGTACCAAGAAATGTATAGATCAAATGGGAGGAATGTTTTATTATAGGCATGAGAGTGAATGGCTATCCTTTAGCGGGGAAAAATAGACAGACAGAGATAGTTAAAGTCAGATTTTCGAGGATAGGCTGTGGTTTTTGACAGAAAATGAATCCTCGAAAAAAGAGTGGTTTCTTGTTGGCACTGAGTATGAAAAAAGCCTTGGTGTGACTGGGGTTGAGCATGTTAGTCAAAGTCG # Right flank : GCTCAGTCAACATGTGTAGTTTTTGAACGACCTTGTTCTTGAGGTAGTAGCAAGCTGCCTCAAAGCTGCCGACAACGAATAACATCCAGTAAACAGCAAGAAGCATCCTCTGCTATTGGAGGATGCTTCATTTTTAGAGCTATTTGATCTCAAAATCGTGTAGCTGTTGTATTTGCCAAGTGCTATGTGCTTTCTCGGATTTTTTGGGTCCAAGTTGATTACTTTTTTCACAACACATCCAGCATGAACAGTGAATTTTACCTTTGGCTAATCGACCGTAATCATCATTTTTTACTTTCCACTCATAATGCTTGATGATACTCAACCTACGATTAATAACTCGTTTACGATGGTGTCGGTAATAAGCTCGATTTCGATTGGATTGGTACGGCTTTAACATATAAAATCACGCTCCCCCGGCAGATGAGCTTAGCCTGTAAAAGCCCCCAGGGAAATGTTTGGGCTGTTACAGGCTAAGCATGGAGGGAGCGGTGAGGCGA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTACATTGAAGACCCGAAAAGTTAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 15279-16316 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJMH01000054.1 Brevibacillus parabrevis strain NBRC 12334 sequence054, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 15279 36 86.1 37 .....G..TTT..............G.......... GCAGGTGCTTGGTCGTCTACATTTGACCTGCTCTACA 15352 36 77.8 22 ....................G...C.C.A..G.CGT TACGATTGATAGCAGTTTCGCT AC,T [15374,15377] Deletion [15410] 15413 36 100.0 35 .................................... TCGAGTAGGATTTTGTGTTTTTTTACCGTTTGTAA 15484 36 100.0 37 .................................... CTTCTTCGCGAAAGATACGATGGTCGTAACTTGCCAA 15557 36 100.0 34 .................................... TGAGTAGCAAGTGCTATTGTACCGCCACCGCCAA 15627 36 100.0 40 .................................... GGTGCCAGCGTTCAAGCTAGCTGTAGACAAAGAACAGTCT 15703 36 100.0 35 .................................... TATGCTCTCACTGTCATGTGGTCATCACCTGCCCA 15774 36 100.0 38 .................................... CCAGTGCGGATTTCAGTTGTCCGCGCGGGTCTTTCTTA 15848 36 100.0 36 .................................... CCGACTGGTTTAGTGTAGCGGATGCTCATGGCTCGA 15920 36 100.0 36 .................................... CAAACTTGGCTTTCAGTGTTAACGGTCGATCGATCG 15992 36 100.0 36 .................................... GATCAGAGTCATGCTTGACCCACGCGCTTTTGACCC 16064 36 100.0 37 .................................... GCTGTTAACTTGATAAAAGATACTTTTTATCTAAAAA 16137 36 100.0 36 .................................... TGCAGCAGTAGGTGTTTCCGATTCGTCGCAATGTGC 16209 36 100.0 36 .................................... AGCACTGGTGTACCTTATGGCAAAAGGAGTGATAGC 16281 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 97.6 35 GTGCTAATCCCGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : GCCTTTACCGGACGAACAATCCATGGCGAGTTGGGTCTGCCAATGAACGAAAATGTAAAACGCGACATCGACCCGAAAGTAGGCTGGCTGCAAATTTCCAGCGAAGTCATTGGAAAATACGCCAGCGATTATATTTTCATGGCTGTCGATGCCAAAGCCGAGTCATTTGATTACGCGAATGATCCAATCTGGAACACCTTGGATGCCGTCAAACAAAACCATCTGTACGAAATTGACGGTTACCGCTTCTATTTCTCTGATCCGATTTCTGTGATGGGGCAACTAGAGGATATTGCCGATATGATGGAGGAGAGGGAAAAGGCTAGTGTTAAGCGGGGATAGTGGTGGTGCTGGAGACTTCGGAGTTTTGCCGTAGGCTTGAAGAACAGAAAGATGCCCCTAACGTTGAGTAGGGGCATTGTTTGTTATGCGGGGATTGAATTTTTTACTGAGTTTTCGACAGGCAAAAACGAGTATAACGTCAATGGAACGGTGATATT # Right flank : CTCCTTCCTTGCCGAAACCTACAACAACAAGGCTTGAGCAGGGCTTTTTCGAGCGCCAGGAATTTCAGTATCCCTTTCCCCGTCTATGCACTCATTTCCAATGCACAATCGTTCAAAAAAGCTTACTCTCACAAGGATTTCGAGCATCTCCAGTGATTTTTGAGCTGCGGGGATGCTCGAAAATCAAACGCACATACTCAGTGGAACTTCGTGACTATTCGTGGTAGCCGCCCTGTAATGCAGGACGACAATGCACACGCACGAAATTAAAGCAAATCGACATACGGCCTCTAACCGTCGACTATCATCATTGTACTGTTTTCGCCTTGCCTCAACAACACACATCCACTTTCCTAGTAGATAAATTTAGTTAAGTCTCGCGGGAGGAACTCTCTTCCGACCGTGGCAATTCGCTTATCCAATTGGTCCTTGGTCACCGGGCCGATTTTTACAAACATGACCTGATCTTCTGCATGATGAATCAGCTCAGCCAGACTGAC # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAATCCCGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 22112-22714 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJMH01000054.1 Brevibacillus parabrevis strain NBRC 12334 sequence054, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================= ================== 22112 36 69.4 89 C..A.....GT....T....T...GG.GA......G AGCCGCAAGATGTATTTAGATATGCACGTGCTTGTTTCAAAGTTTTCGAATGGACTGGCCGTTTGGTGCTGGCTTCATCCATCCCCGTG G [22116] 22238 36 88.9 34 .......T..T.........T...G........... GTCGTTTGTTAGCCGGATCGTCGACCTTCGACCA 22308 36 97.2 36 ..............A..................... CAAGATCGAGCACAGAATAGAATTAACAAATGCAGA 22380 36 100.0 39 .................................... GGGAAAGAAATGGGCAAACGGAAGTGCTACGTCCGACGC 22455 36 100.0 37 .................................... CAAGCTGGTGTGGAATTGTATCGCCATTATCGTTATG 22528 36 100.0 38 .................................... CAAAAGTTTCATCCTCATCAGCAACAATGTTTTCTATG 22602 36 100.0 41 .................................... CACCATCATCGTTCCGGGCGAGTCTGCAAAGATCTGTACGG 22679 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================================= ================== 8 36 94.4 45 GTGCTAACCTCGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : CGGATCGACTAGCGGGCTGAGGAATTTTCGGCTAATGATCTGGGCGTCGCCACTTTGCCCAATCGAGGAGGGAACAAGCAGTTCATATAGTTGCCGCAAAGCTGCGAATGCCTTGTCCAACGGGAGCGCTTGCGTATTTTTATCTGCACGATTTTTTTGTTGCTGTTCGCGAATATGACGAACCAGCTCTTCTTGCAGTTCTTTTTTTGTCTGTCCGCCAGTGCTCTCCTGACGAAAGAGCAAGAGCATTTTCATATAATAAGCGACGCCTTCATTTAACAGCCGATGCGTTCGCCATATTCCTTTTCGGAGGTTTTGGGCTTCCGGGCCTGTGCGGGTTTTGAGCTTTAGTTTTATACTGCGGATTGCCATGGCTGGTGCCTCCCGGTTTGATTTTGAAAAGAGTTGGGCATGATTTTTATTTATTGTAAATCATTTTCATATTTTGGGGTAATAGGAAAAAGCCAATTCCACTGTTTCTAGATGAATTGGCTTTTGTT # Right flank : TCTTCACATACCCTTGGTCGCGTTATCGCTTATTTGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAACCTCGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 26-578 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJMH01000058.1 Brevibacillus parabrevis strain NBRC 12334 sequence058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 26 37 100.0 35 ..................................... GGAGAGTTTGATGAAAAGGTACAAGTTGAAAGGTT 98 37 100.0 37 ..................................... AAATACAACATGACCGAAGATGCCTTCACGCTCATTG 172 37 100.0 39 ..................................... CCGAAAATCTGCGAAGGATTGCAAACGAACCGAAAGCAA 248 37 100.0 37 ..................................... CAACAAAACGAACGGCATAAACGGCATCATTTCTTGC 322 37 100.0 35 ..................................... AAAACGGGCCTAGTTCTTGTCCCATATCCATCCCA 394 37 100.0 36 ..................................... TGGAAAAGTGCTTGCAGTCCGGGCTGAGCCAGCAGA 467 37 100.0 38 ..................................... GTACGGCAGGGATAGCTGCAACTCACCGTTCTTTACCT 542 37 81.1 0 ...................A.GTA..CA........T | ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 97.6 37 GTTACATTGAGGACCCGAGGAACGAGGGGACTGAAAC # Left flank : AAAAGTAACTATTGAGTTAATCAACG # Right flank : TGGCTGGCGCTTATCGTCGCGTCCGCACTCTTGTGTGGTTGCATTAAAGACCGAATAGTGCTGTTCCGACATGTAGATCATGAAAGCCACCGTTAAGTTGAGCTATGCTCATTAGAAGTCCTGAATGGAACGGCGGAGGAAAGGAATGCAGGGGAAAAGCCACTGCTTGATAACGGGCTGGCACTGATTGATGTTCACATGTGCTAAAGCAGGGCAGGGCTTCCAGCGTTGATGGAAGGCAGTTCTAAGAGTAAGGCAAGTTGATTTCCAACAGTGGTGTTGAGAAGATAGACACTAAAAAAGGCACGGAATTGATCACCCGTGCTTTCCAAAAGATGCGATTTGATGAATAAAGTAACGCTCAATGCTAACTCCTATGCTTATTCTTTGGCACAGAGGTACTTCCTCTTCCGCCTAAACGAAATATTTGAAGTGAAGATCACTGTATAATAGGCAAAAGTAAATGCCGTCTGGGTGAAAATAAAAAACGAAAGCAGCAT # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTGAGGACCCGAGGAACGAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 1451-3338 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJMH01000058.1 Brevibacillus parabrevis strain NBRC 12334 sequence058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1451 37 100.0 36 ..................................... ATCGACACGCAACAAAGACCCAATCACAGGGAAGTC 1524 37 100.0 37 ..................................... GGCAATTAAAGCATTGCAACGATGTTCTCTCGATGAT 1598 37 100.0 38 ..................................... CTTTCTAAGCGCTAAACGGATCTCCCGTTGCTGCTCTC 1673 37 100.0 35 ..................................... GGATAACTGGCAGGGCCTTCATTGACGAGAATTGC 1745 37 100.0 37 ..................................... TGATGCACTGCCTCTGCCATGCCAACTGTTCGGCATC 1819 37 100.0 37 ..................................... AATCTGGCGGTGGTGGTATCTCGTTTCCGATTTTGTC 1893 37 100.0 37 ..................................... TGCGACCACGGGCCAAATGCCGCGAAATGGTTATCCA 1967 37 100.0 37 ..................................... CCGACGATCTCTCCGCGATCAAATGGATTAGTGACCT 2041 37 100.0 37 ..................................... GGGCAGCCGCTAAAGAAAAAGAAGTCATTTCGCATGA 2115 37 97.3 37 ..............T...................... CCGGTGAGCAATCGCAATTTATACTGCTGCCCATCAA 2189 37 100.0 36 ..................................... TCGAAGTCGGTCGTTCACGCACTGGCCGATGTGCGC 2262 37 100.0 37 ..................................... AGTCTGGCCTATCATCAGGTTCATCCTCTTCCGAATA 2336 37 100.0 38 ..................................... ACGCAGAAAAGGAGAAGAATTGGCTGATTAGATTTACC 2411 37 100.0 38 ..................................... ATGAATTTGGATAAACTCTATACTTAGTTTCTTTCATT 2486 37 100.0 37 ..................................... AAGTCGGCGCAGGTAGCGCGCTGCGGTAACTCTGTAC 2560 37 100.0 37 ..................................... TATCCAGTATGATAACTTTCATATCTCGGTAGGACTT 2634 37 100.0 37 ..................................... CTATCTGATCCGGTGTGTATTTAGCCAAAGCAGATAG 2708 37 100.0 38 ..................................... CGTTAGTGGATGGTACGCTCTACGCGGTGTCCTGTGAT 2783 37 100.0 39 ..................................... AGATCTTCGTAATAAGGGTTGATGATCGGGCCGTGAATG 2859 37 100.0 36 ..................................... ACGACACATTTCGGCTGCGTTTGTACGCCTCCCAAA 2932 37 100.0 36 ..................................... GAAAAACCGGAAAAAATGAGTAAGTTTCTCACCAAA 3005 37 100.0 36 ..................................... ATTACATCCCCGATCACAACTTTCCGGCTAAACACC 3078 37 100.0 38 ..................................... ATTTACAAACTCAGGTGCATCTAGAATCTTCGCGGATG 3153 37 100.0 38 ..................................... ACACAACATACGACAAGGACATAACCACCGTCTTGCCT 3228 37 100.0 37 ..................................... TGGCAAACACTTCTGCGATTGTCAGGTTATCAGTCAC 3302 37 91.9 0 ......................C....A.......G. | ========== ====== ====== ====== ===================================== ======================================= ================== 26 37 99.6 37 GTTACATCGAAGACCCGAAAAGTTAGGGGACTGAAAC # Left flank : CCTATGCTTATTCTTTGGCACAGAGGTACTTCCTCTTCCGCCTAAACGAAATATTTGAAGTGAAGATCACTGTATAATAGGCAAAAGTAAATGCCGTCTGGGTGAAAATAAAAAACGAAAGCAGCATGAAATCGATTTGGGATTCATGTTATGTTCTGAAAGCTTAAACAGTAAGTTGGATTGCTCCCCATGAAGAAATTTGGAGCGTTCAAGTGGCGGTTGAAGTTATTTTATGTAGTGGATGAAAAAGGCTTTTTGGATGCTAGACCGTTTAAAGAAATGTATAGATGAGATGGAGGATAATGTTTTATTATAAACATGAGAGCGAATGGTTACTCTTTAGCGGGGAAAAATAAACAAGATGAGCACAACGTGATTTTCGAGGATCGGACGTGATTTTTGACAGAAAATGAATCCTCGAAAAAAGAGTGGTTTCTTGTTGGCGTTGAGTATGAGGAAAGCCTTGTCACGACTGGGGTTCAGCATGCCAGTCGAAGTCG # Right flank : CTTCCAGCAAGCCAGTCATGATGCTTGTCCTTGACGGCGTTACATCGAAAACTCAAATACAAGTAAACTAACCCCAATCCCCCTATGAGGCCCCTCAAGAAAATCTTGTAAAATGCTTCTGCACAATTGCAAATGGCACCCCAACTTGACACAGCCCCCTTCCCAGCTCTCGTTGTATTGCTGAAAATAATCGAATTTCAATCCCCTAACTTTCCAGCTCTGTCATACAAAAGTAATCAGGTAAGGTTACCCCTCGACTGCGAGGTTAGTTTCAGTCCCCTTGCCACCCACCTCCCTCCCCCAAAAATCCCCCCTATATATTCCTTTTCCACCCCACTCATGCTATATTATTAGGAAATAAGTCCCATTTCCCCATCTTTCGACAAAATGCCTCGCAATGTTTCACAAAACACCCAATACTCAAACACCTTTTTACCCAAACCAAACCCAATCTAAAAACCCAAAGACACAAGGCTCTCTTTCAGTAAAAGTGGCAGCGG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCGAAGACCCGAAAAGTTAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 657-1787 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJMH01000083.1 Brevibacillus parabrevis strain NBRC 12334 sequence083, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 657 36 86.1 44 ......T..CAA.....C.................. TGCTCAACTGCTGTACATCCACTCACACGGCATTCGGCAGCAGG 737 36 91.7 37 .......T.C.A........................ GATTCGAACTCATTTACCTCATCTTCTATTCCGCTAA 810 36 97.2 35 .......T............................ GGAACTCGTTCAGTTTGTTCTTTGTACCTTTCTCG 881 36 97.2 37 .........C.......................... CGAACCATCCGGTAAGTATCAAACAGTTGTAAGCTAT 954 36 94.4 35 .........C.......C.................. GATGATTAAGCGGCGATGGAACAACTATTATGCCA 1025 36 100.0 36 .................................... TTGGCTTGAAATATGGTAAGTCATCGACACACCTTT 1097 36 100.0 40 .................................... AATTGATAAGCAAATTGAAAGCTCTTAATCCTAGGAGGTA 1173 36 100.0 37 .................................... TCTATTTGTGGGCGACACACACACCACAAAAACCCGC 1246 36 100.0 38 .................................... TTCCCCCACCCGGATCAGGTGGGAGATCAACGTCCCCA 1320 36 100.0 36 .................................... GGCTATTGCTGGCTTAGATGCAATCAAAGAGGCCCT 1392 36 100.0 36 .................................... CCGTAACAAATGCTTCTAACCAAAAGTCTGTCCCTA 1464 36 100.0 36 .................................... GAAAGAACGTAGAGGTGTATTAGAAAGTGAATTGCG 1536 36 100.0 35 .................................... TTCATCTGTTGAACTGTTCGAATGATGTCATCCCG 1607 36 100.0 37 .................................... TCGAAGAAGAAGAAAAGAAAGGAGCCCGCCACCATGC 1680 36 100.0 36 .................................... CGACTCCGTCTGTTCGACATAAGCTGGAAAGTCAGG 1752 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 16 36 97.9 37 GTGCTAACCTCGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : AAGATCGTAGAAGATCCTGCAAGATAAAAATGGCTTTACCCGAAATCTCATAGTAAAATATGGGCAAGTACATTAGACACGGCTCTCAAGGGTGGTCGGCTCATCTCCCATGTCGGAAGCGAGGGGAGGTGGGAACGTGGCAATTACTCACGAAATGCTTACACTTATGCTCCAGTTCGGCGGCTTTATCGTTGGGCTGTTGAGTCTCGTTGTAACAATCGTTGTTGCCCTGACCAAAAGAAATGACCGCCCTTGAGATTGGCGTCCAAGGCGGTCATTCTGATCGACTATTAAGCTGAGCCGTCCCCTTGAGGGAACGTCTATTGTACTACCGGCAGAGTGCGGGAACACCCTGTCGGTTTTTATTTTGTCCACTTTTGGTTAAACATTAAACACTTCATGTTGAAAGTGTAACCGATCTTGCTTCCATCATAACACGTTTGACATGTCGGCGTAAATAAATAAGCGACCCCACATGTCTTTATAATCTCCTGGTTCAC # Right flank : GGCCATTAATGATCAATAAAAAATGACACCCTAATTTG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAACCTCGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //