Array 1 6315-5627 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAAZ01000026.1 Pseudomonas aeruginosa strain HUM-334 NODE_105_length_6586_cov_13.7252_ID_209, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6314 28 100.0 32 ............................ GCAGCGATCAACGGCCATATCTACGAGCTGGA 6254 28 100.0 32 ............................ CTGACCCGCCGCATGGTGCTGGGCCTGCAGGA 6194 28 100.0 32 ............................ TGCCAGCGGGCGGTATGCGCCTGCGGAGCTTC 6134 28 100.0 32 ............................ TCGATCAGCTTCGCGGCGCGGGCGGTGTATTC 6074 28 100.0 32 ............................ ATGTACGAAGTGCAACGCAATACCTACGTCCC 6014 28 100.0 32 ............................ TTAGCGGTCCGTCCTCGGTGACGGGGCCTAAG 5954 28 100.0 32 ............................ AGGAACGGCGTGCCCTTTTCGTTGGAGATCGT 5894 28 100.0 32 ............................ TAGCGATCGTCAGGCAGTACCTGGTGCAGTTC 5834 28 100.0 32 ............................ TGGTAGCGCTTCGGCTTGTCCGGCCCATCGGG 5774 28 100.0 32 ............................ ACGAGGCATGGTTGAATCGCCCACAGGGCGGC 5714 28 100.0 32 ............................ TTCAGCTTCTGCTTCAGCCGCGGATCGCTGAT 5654 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAGGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCTTCTAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCAGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCTAGCCGAGAGGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGTCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACGGCGTCCCCCATCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37519-38206 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAAZ01000007.1 Pseudomonas aeruginosa strain HUM-334 NODE_49_length_48174_cov_9.34109_ID_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37519 28 96.4 32 ..A......................... AAAACGAAGCTTCCTGCTAGAGGACTGCTGTA 37579 28 100.0 32 ............................ TGAGCTGCTTGATGCTCTTGAGGACGCGGTGA 37639 28 100.0 32 ............................ TTCGACGCGGAGCTTGTTCCCATCGACCCGAA 37699 28 100.0 32 ............................ TTGTAGGAGCCGGGCAACAGCCCCTGGTGCGG 37759 28 100.0 32 ............................ TTGGTCGAATCCGCGCAGGCCTCGCTTGACCG 37819 28 100.0 32 ............................ TTGCCGACCGCGTTCCCCGTGCCGGGGTGCTG 37879 28 100.0 32 ............................ ACAGCGGCTCGCCGTTGGCACCGAGGGCGGTC 37939 28 100.0 32 ............................ AAGGACTTGGCCGGCTTGAAGAGCTACCTGGG 37999 28 100.0 32 ............................ ATCGGCTGGTCGCTGATCCCGCTGGGTTGGAA 38059 28 100.0 32 ............................ GTCATCGGACGAATCGCGTCACCAACCGCCCG 38119 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 38179 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGTCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47903-46734 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAAZ01000007.1 Pseudomonas aeruginosa strain HUM-334 NODE_49_length_48174_cov_9.34109_ID_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47902 28 100.0 32 ............................ TCCAGGTGCCGTTCGAGCACCCAAAGCCAGCG 47842 28 100.0 32 ............................ AAGGCCCCGGCGTATGCGATTGCTTGCTCATT 47782 28 100.0 32 ............................ TCTTACCAAGGCCTTTGTAGCGGTATCCGACA 47722 28 100.0 32 ............................ GACGACTGCGGCGGCGATCAGGGAGGCTACGA 47662 28 100.0 32 ............................ AGAACAATGGGAGCCGTGACGACCAGCATGGT 47602 28 100.0 32 ............................ GTTCGGTTAGATCTGGCGATCATCAGCCACCT 47542 28 100.0 32 ............................ ATTCGAAGAGCGGACGTCCGGCGACTTCTGCC 47482 28 100.0 32 ............................ TCGCAGCGGCACTGAGCGATGCGGATCTCGCC 47422 28 100.0 33 ............................ GCAGAGCGGAGCCTTGCCCCAGCCTTTCTTGCC 47361 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 47301 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 47241 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 47181 28 100.0 32 ............................ TGCACAAAAACACTGCGCGACCAGACGACATG 47121 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 47061 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 47001 28 100.0 32 ............................ GCGATCCACGGCATCAGCCACGAACAGGCGAT 46941 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 46881 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 46821 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 46761 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : AGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGTCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGGCAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAACGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //