Array 1 96382-93468 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018167.1 Anabaena cylindrica PCC 7122 plasmid plasmid1 DNA, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================= ================== 96381 23 100.0 49 ....................... ACCTCTTCTGGCTTTAAAACGTTACTATTTTCTAGGTTTCGATATAACT 96309 23 100.0 50 ....................... ATTAACCTTAAAATCTGTTGCATCTGTCCAGTGAATGTTTCGATATAACT 96236 23 100.0 54 ....................... TCATCTATAGACACAAAATTCGAGGCTATGTAAGACTCTAGTTTCGATATAACT 96159 23 100.0 51 ....................... AAATAGCCGGATTCGGAAAAGTTTGGCACAACTTCAAGTTTCGATATAACT 96085 23 100.0 50 ....................... GTGATAGGCTTGGTTGTTCCAGGGAAAGGGAACACTGTTTCGATATAACT 96012 23 100.0 50 ....................... TCAACGGTATATACCCAGTCTCGTTGCACCTTAAAAGTTTCGATATAACT 95939 23 100.0 50 ....................... GGCTTTTATATTGCCTAAGATGTTTTTGTAAGCTACGTTTCGATATAACT 95866 23 100.0 56 ....................... ATTAATAAGTTTTTCTTTAGCGATCGCTTGACCGGTTCGAGAGTTTCGATATAACT 95787 23 100.0 49 ....................... TGACAATGAAACGGAACAAAAAACCTTTGTTGAAAGTTTCGATATAACT 95715 23 100.0 50 ....................... TAGATGTTATAAATTCTATTTCTAATTTAAGAAAAAGTTTCGATATAACT 95642 23 100.0 50 ....................... ATGATTTTATGAATTTCTTTTAAGATTCCCTGTAAAGTTTCGATATAACT 95569 23 100.0 51 ....................... ATCCAAAAGTCTGGAGACTCAATTATGTCGTCTACAGGTTTCGATATAACT 95495 23 100.0 51 ....................... TTCATCTCTATCCCAATACCAGACAGTTGCAACAATAGTTTCGATATAACT 95421 23 100.0 50 ....................... ATAGTTCAGTTTTTTGGCAGCTTCTTTTAATGGAATGTTTCGATATAACT 95348 23 100.0 51 ....................... ACTGCTAGTACCTATCTAGCATAACCTGTAACAGGTTGTTTCGATATAACT 95274 23 100.0 49 ....................... ATAGCATCGGAGTTGAATAATATGAATTTTGCCTTGTTTCGATATAACT 95202 23 100.0 51 ....................... AAGATTAAACTCCCCTTTGCTATCAAACCTTATCTGGGTTTCGATATAACT 95128 23 100.0 51 ....................... ACCAGTCGATGTACCAGACTTTTTTACAGACTAGATAGTTTCGATATAACT 95054 23 100.0 48 ....................... CAGTCAAGATTTGATAAGACTCGATTGGAGATAGGTTTCGATATAACT 94983 23 100.0 57 ....................... TTAGCATTGATCCAAAAACCTAACCCTAGATAAGTTAGCCCCCGTTTCGATATAACT 94903 23 100.0 53 ....................... ATCCCTACACAGGTTATCAGCAATTATGATTTTCATCAGGTTTCGATATAACT 94827 23 100.0 56 ....................... GTTTTAAAGTTGAAGATACCCTTAATTTAATTGAGGTTGATGGTTTCGATATAACT 94748 23 100.0 52 ....................... ATTTATCAATCAAAACTGAACCTCGACAATTTAATGAAGTTTCGATATAACT 94673 23 100.0 51 ....................... CTGCCCCTTGTCCGATTCCTGGCAGCTATCAAATTGAGTTTCGATATAACT 94599 23 100.0 51 ....................... TCTCCTAGATATAAGTACAGATTCTGGTAGTTTAGTTGTTTCGATATAACT 94525 23 100.0 53 ....................... AAAGGAGTATCGTCTACATTAAAGCATTAAAGTTATATCGTTTCGATATAACT 94449 23 100.0 51 ....................... TTAAGAGCAGTTTGTGTGGTAGCCATGATTTTTTTTAGTTTCGATATAACT 94375 23 100.0 49 ....................... CCTTTAATCGCGGCCGGAGTTGTAAAAGCTCAGAAGTTTCGATATAACT 94303 23 100.0 48 ....................... TTGCACCCCACTTACCAGGCACTAAGGTCAAATAGTTTCGATATAACT 94232 23 100.0 47 ....................... TTTATTTGTGGAGTTTAGGAATATCAGTTATTGGTTTCGATATAACT 94162 23 100.0 48 ....................... TTCATATTTCTTGCCTTCGCGATCGCAATAATTTGTTTCGATATAACT 94091 23 100.0 55 ....................... ACATCTGAAGGAATTTCTAGCTTCTCAGAAGCTACGCCCAAGTTTCGATATAACT 94013 23 100.0 56 ....................... CAACAAAACAAAAGGTATCTATATTGTAGGATGTCTTGCCAAGTTTCGATATAACT 93934 23 100.0 55 ....................... ATTATTTGTGATGAAGCCCACGAGACTTGCTGGATATCAGTGTTTCGATATAACT 93856 23 100.0 53 ....................... GTTTCTTGTGAACAAAAATATCCCACGATTCACTATCGAGTTTCGATATAACT 93780 23 100.0 48 ....................... CATTTCCAACGATAAATAAATGGATCTAAATTATGTTTCGATATAACT 93709 23 100.0 48 ....................... ATGGAAAAACAAAGTAAGGAATAGTAGGAGTAAGGTTTCGATATAACT 93638 23 100.0 53 ....................... TTTTCCAGATAATCTCTTTACGTTCTAGTTCTTGTCTATGTTTCGATATAACT 93562 23 100.0 49 ....................... TCACTTACCACACATACCGCACTCGCAGCGCGTATGTTTCGATATAACT 93490 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ========================================================= ================== 40 23 100.0 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : ACAAAAGGCAGAATTATTAAAGGTTATGGCAAATCGTTCCCCAAAAGATGCTTATTACAGCCTTCAATATCGACATGGGGATAATAACGTAACTATGCGCTTACGAGCTTGGCGACCAAAAGTAGAAATTTTGTTACCTTATGATTTAAGACAGAAAGTTAAAGCCGATATTATCAAGGAAATAGGGCTTTATCAGATATAATTGACTAAATTGGTCAATTTAACACTTAAATATTTGTAATACAGTAAATCTTGACAAGTAACTTGCTAAATTTTACACTTAATATAAGGATAAATTTGGCAGACCTAGAGCGGGGTCAAAAACCCTGGAGATCCGCCAAATCGCCAGAACCTTGATAATTGAATACTTTCAGCGTTTCATTAGTTTCAGTAGGCAGTTAACCCAAAGCCGGAAATGAGGTTTTTTGAGAGGTCTGCCAAAATCCCCCCTACAGTCTGCTCCTAGACTGTGTTTCAGATGGCGGGGTTTCGATATAACT # Right flank : AGAGTAAAATACTGAGCATAAGATCATGTAGCATCAAAAAAAAATGCCAAGAGTAGCTACATCTAGCAAACGCAAAACCCCATCACAAAACACCTCTCTAGTATGGGCTGATGATACTGAATTAGTTGGTTTAGTCTTTGACCTAGAAGTAACCAATTCCACATCGCTATACTCGCAATATACCATTGGACTTCATGCTTGGTTTCTAGATCAAGTTCGCCAAATTAACCCAACCCTTTCAGCATATCTGCATGATGGCGAATCAGAAAAACCCTTTAACATTTCTGCCCTCGAAGGTCAATTAGTTCCCACTGGTAAACAACTGCAACTGCAAGCAAATCACATTTATCGTTGGCATCTTAACGCCATTTCTCAACCAGTAGTTCAGTTCTTGAGTCAGTGGTTAAACCAACCTCCAACTATTCTGACATTAAGAGATGCTTCCTTACAAATAAAACAGATAAGTATTGTCCATCCACCAAATACTTATAGCCTACTAC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 119571-123064 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018167.1 Anabaena cylindrica PCC 7122 plasmid plasmid1 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================= ================== 119571 23 100.0 51 ....................... AATCAAATTCAGCTACGTACTTCGCGAAGCTTTCTAAGTTTCGATATAACT 119645 23 100.0 48 ....................... TCTTATCGTCTTGTTCTGCGGTTAGACCGATGCTGTTTCGATATAACT 119716 23 100.0 50 ....................... GCTACAATCACACAGAAAAAATTTTTATTGACCTAAGTTTCGATATAACT 119789 23 100.0 51 ....................... ATTAGATCAGAATATTCATCTGTGGCAGATGAGCCAAGTTTCGATATAACT 119863 23 100.0 53 ....................... GTTTCACCACTGCTACCAGACCAACTACCTTTTTTCTTGGTTTCGATATAACT 119939 23 100.0 53 ....................... AAGCGTAAATATTTCCCGTATGAATTGGGGTAGGGTTTCGTTTCGATATAACT 120015 23 100.0 50 ....................... AAGACAATGCAGGAATTAAAAGGATACACACCAACAGTTTCGATATAACT 120088 23 100.0 52 ....................... GCTTTGTCTATAGTTTATAAGGGTTAGAGTGATCCAAAGTTTCGATATAACT 120163 23 100.0 50 ....................... AATTCTTCTTGTTTCTGGATGTTATAGAATTTAGATGTTTCGATATAACT 120236 23 100.0 49 ....................... CTCTTTTTATCAATCTTCCTCTGTAATCTTTTGATGTTTCGATATAACT 120308 23 100.0 49 ....................... GTTCTGGAGGAGGAGGATCAGGGGGTGATGCGAGTGTTTCGATATAACT 120380 23 100.0 53 ....................... TCAACGCATATGGCGCGCAAGGTACAAGTTTCTGGACGAGTTTCGATATAACT 120456 23 100.0 52 ....................... TTCAGTTGGAATACAACAATAGGCGAAGTCCAGCTTTAGTTTCGATATAACT 120531 23 100.0 54 ....................... TATCTTACTATAGATACGACTATAGATAGTGATATAGGGGGTTTCGATATAACT 120608 23 100.0 49 ....................... TCAATCAAGTACAATGGTGGCAATATCTCTTAAATGTTTCGATATAACT 120680 23 100.0 50 ....................... ACCCTCGCTGTCTGGCAATTCTACTAGATGAGCTATGTTTCGATATAACT 120753 23 100.0 49 ....................... TAGTCAGGTAGCTGCTGATTACCGTTTTGTGCGTAGTTTCGATATAACT 120825 23 100.0 48 ....................... ATCCTACTAACCGATGGCGAAGATCTCAACATAAGTTTCGATATAACT 120896 23 100.0 56 ....................... GTTAAATCTCTGATTCCAAGCTCTCTGTTATTCGCTGCTATAGTTTCGATATAACT 120975 23 100.0 52 ....................... TAATATCTGGGGGATTGAGTGCGATCGCCAAATAGCAGGTTTCGATATAACT 121050 23 100.0 49 ....................... AGGAATTTAACTCATTTTGTAGGTTAGTTTCTTCAGTTTCGATATAACT 121122 23 100.0 57 ....................... TCTTCCAAAAATCAAAAGATATTCTTGCTGACAAGCAATCAATGTTTCGATATAACT 121202 23 100.0 52 ....................... TACACTAAAAAAATAATCCCCCAAACCGTCGTAACCGGGTTTCGATATAACT 121277 23 100.0 52 ....................... GAGAAAATGACAGAAGAACAAGCAAAAGAACTTTTAATGTTTCGATATAACT 121352 23 100.0 50 ....................... TTGGCGTAAATGTAGCCTATTAAATCCCCCTCAAGCGTTTCGATATAACT 121425 23 100.0 52 ....................... AACAATGGTTCGGGTTTCTCTATGTCTTGACCCTTGCCGTTTCGATATAACT 121500 23 100.0 51 ....................... ATATCGTTATATAGTAATACGCGAGGATAGCGATATAGTTTCGATATAACT 121574 23 100.0 52 ....................... GCCAATTTCAGAAAGATTGCCAACAAATGATTTAAGAAGTTTCGATATAACT 121649 23 100.0 49 ....................... TTAAAATCAGCCATGATCTTTAATAATTAAATTTAGTTTCGATATAACT 121721 23 100.0 50 ....................... ATTTCTTCCAGGGTTGGTTTATGGTGGAAAACCCTGGTTTCGATATAACT 121794 23 100.0 50 ....................... CAGAGAATCCAAACATCTTTAGAATCACCGCCAACCGTTTCGATATAACT 121867 23 100.0 51 ....................... AAAAGCTTGTTGTTTGTCAAGATGAATGTCGCAGAAAGTTTCGATATAACT 121941 23 100.0 47 ....................... TAAATGTACTATGCTGCTCTGGCATTTAAAATAGTTTCGATATAACT 122011 23 100.0 48 ....................... TTAAGAATATGACTAATTATTGCAATACAGGTGAGTTTCGATATAACT 122082 23 100.0 51 ....................... CAACTATCGAAGCGGTTTCTTTCTGCTAAGTCCAATGGTTTCGATATAACT 122156 23 100.0 51 ....................... CAAACAGCCATAGACAACACTATTGCCACCGTTGGCGGTTTCGATATAACT 122230 23 100.0 52 ....................... GAGATACAAAGCAATCTGAGAAGTCTTTGCCACCTATAGTTTCGATATAACT 122305 23 100.0 50 ....................... TAATAAGCTTCCTTTATCGATCTAAAAGCTTCAGTAGTTTCGATATAACT 122378 23 100.0 49 ....................... TAACATAAACCCATAACCCTTGTCAAGCATGACTTGTTTCGATATAACT 122450 23 100.0 50 ....................... TTCTTGCCATATCTGCAATAGCATTAGCAATCAAGAGTTTCGATATAACT 122523 23 100.0 53 ....................... ACAATACTCGCAGACTTAGAAGATTTTTCAAGCCTAGCGGTTTCGATATAACT 122599 23 100.0 51 ....................... AAAAGTTAGTTGCTAAAGAAGTTGGTGCGGCTGTCGGGTTTCGATATAACT 122673 23 100.0 55 ....................... ATGCTATCCTATTAATTGCCTTATCAAAATAGTAGTGATTGGTTTCGATATAACT 122751 23 100.0 49 ....................... AATGTAAAATAGACAACATGAATCCATCATTGTAGGTTTCGATATAACT 122823 23 100.0 49 ....................... ATTATCTATCTAATTGATTATGTTGTATGTAACTAGTTTCGATATAACT 122895 23 100.0 52 ....................... TCAATCAAGTCCCAACATAAAGGCACTAGTTATCAAAAGTTTCGATATAACT 122970 23 100.0 49 ....................... AATCCAATTAAGAACAGAAATAAATAACTCATCTTGTTTCGATATAACT 123042 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ========================================================= ================== 48 23 100.0 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : ATCTGATTATTTACGACTTACCTGATAATAAAGCTGCAAATAAGCGGCGTACTCGCTTACATAAAATGCTGAGTGGTTATGGTAAGTGGACTCAATATAGTGTGTTTGAATGTTTCTTGAGTGCGGTACAGTTTGCTACACTACAAACAAAGATAGAAAAACTGATTAAGCCTGATGAAGATTCTATTAGGATGTATGTACTAGATGCTGGTAGTGTGAAAAGAACTATCACCTATGGTTCGGAAGTACCTAGACAAGAACAAGCAATAATTATATGATGAATACATCAGCTAAATTTTGGCAGACCTAGAGCGGGGTCAAAAACCCTGGAGATCCGCCAAATCGCCAGAACCTTGATAATTGAATACTTTCAGCGTTTCATTAGTTTCAGTTGGCAGTTAACCCAAAGCCGGAAATGAGGTTTTTTGAGAGGTCTGCCAAAATCCCCCCTACAGTCTGCTCCTAGACTGTGTTTCAGATGGCGGGGTTTCGATATAACT # Right flank : CGGCTTTCACTATTGCCAAAGGAGTTTGCCATGTTTAGCAAAAGGTCTTACCAGAAGCAGTGATGACCAGTGTGAATCACAATTACCTAAATCAAAATTACATCAACTGACATTTTTGTACAATGGTCAATCTTTCCGGGCTACCTCTGCTACTGCTAAGTTAATCAAACGATTAGAACCATAGTTGCAGCACAGTATTTAAAATTAGCGATAGCTTCGCTCTCTTCTCTTCGTTCGCGGAGCGTCTGTCTACGACACGCGCCGCGACCGAGTCCCTTAAGGGATACGCCGTAGGCATCGCCCCAACATCAAAATCATCAAAAAATTGAGCATTACTTTACTGATACTGGAACTCGATTTTCCAAACGATTTTTCAGTTCTAGATTCAGGTTTTCACCACTGCGATGAGCTTCCCAGTTTCCAGAGCCAAAGTTACCTAAATCCCATATTCCCTGGATAAAATCGTCATCTCCTGAGATAGTACCCTGATAATTTACTGG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 215919-213706 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018167.1 Anabaena cylindrica PCC 7122 plasmid plasmid1 DNA, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 215918 35 88.6 36 AC...T.A........................... ATTTCAATTACAAAGCAACACTTTCAACATTTTGTT 215847 35 100.0 43 ................................... ATTGTGATATTTGTTATAATTAGAGTTTCGTATTCTATTAAAA 215769 35 100.0 36 ................................... TTGGTTGCCAAGGGCGACCAAGGAACAATCGACAAT 215698 35 100.0 36 ................................... AATGTTTTACTAAAAGCAAAGAATATGTGTCTTGAG 215627 35 100.0 35 ................................... TTTTAGAGAGCTAAAATTTCAGTCCAACTTAGAGG 215557 35 100.0 37 ................................... TATAGCTTATATATTGATATCTTTGTTTGTATCTGCT 215485 35 100.0 41 ................................... GTATTGGTGGTCGACTACGGCAATGAGTGCAATTGCCTTGA 215409 35 100.0 37 ................................... TAGTTGTTATGTTAGGCATAACAACCGGAAATCAGAT 215337 35 100.0 37 ................................... TTCTGCCTCAAAAGATCTCGCTGATTCTGCACGAAAA 215265 35 100.0 41 ................................... TTGCAAAATGATTTAGAAACTGAATAGAATAACGCCACCGA 215189 35 100.0 39 ................................... TGGTGGAAACGGAGGAAACTCCACCTCCCAAGGCGGCAA 215115 35 100.0 39 ................................... TTTACAACTGGTATTTGGGTTGATACAGCCCACGTGAGG 215041 35 100.0 39 ................................... TTTGATGAAAAAATCTTGAAAGAGCAAGGGTACCCTCCT 214967 35 100.0 36 ................................... TTTTTATAGTTCAGGCGATGTTACGCTTGTTTTTTC 214896 35 100.0 37 ................................... AATCCCACTGAGAAGGATAAAAGAGTTCTGGAAAGAG 214824 35 100.0 40 ................................... TGTTTAGCTGTTTCATTAATATTCCTGGCAACAGGTCACG 214749 35 100.0 39 ................................... TTGCTTGGCTCCATGACGCGTTTAGTTGGTGTACGAACA 214675 35 100.0 39 ................................... AACTGATAGTCCTGCTCCAACTTTTGCGATAGTGGAATT 214601 35 100.0 38 ................................... TTTTTCAAGTCCAGTTTTGGCTCAGTCTCAGTCTGAAA 214528 35 100.0 34 ................................... TCAAGTTGTGGAAATTTACACAGTTAGAAAAAAA 214459 35 100.0 37 ................................... AAGTGTCAACACTGTAACTGCATGGTTGAAGAAGCTT 214387 35 100.0 35 ................................... ATTAGTCGGAGTTGCCACCCATGCGGCTCTCGCCG 214317 35 100.0 39 ................................... AAATAGCTTCAGCCTTACAAAGGCTCAAAAATTCGCAAG 214243 35 100.0 38 ................................... AACATGGAACTCAGTATCGCATTCAGGTTTCCAACCAA 214170 35 100.0 35 ................................... ACTACAAAAAGCCGATGGAAGTTGTTTTATTTGAG 214100 35 100.0 38 ................................... TAATGATGCAGTATTGGTACCAAGAGAAATTGAGATAA 214027 35 100.0 37 ................................... CGCTTTCTATTTTGGGTTATCTTGAATGGAAAAGACA 213955 35 100.0 36 ................................... TACAACTAACAACAATGGAACAGTTACATTGATGTA 213884 35 100.0 39 ................................... AGAGAAAATCATTTCTTTTTTAGATTCAAAACAGAAAAC 213810 35 100.0 35 ................................... AGTTTCAGCACCCATTTTATTCATGCTGTTTCCTC 213740 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 31 35 99.6 38 GTTTCCATTAGTTCAACTTTCTAAGAAGTTAAAAG # Left flank : CAATCTACCAATAATTTCGCCAAATGGAGTTATGTACAAGACGGGAATTTGATGAGCAACTACAACTTTAATTATTTCTTTTGGCAAGGTGATGTTACCAAAAAGAATGATTTGGCTGACGTTACTGATTCTCAGGCTTACACATTGTTTTTGTTGATGGAACACCTTTAAATAATGGTGTTGGATTTGAAGGTTTGCATCTTGTTCGGTGATATAAATTGTGGACATGGTTAGAATTAAGTAAAAGGTTAAGAAGTAAAAAGTTGAAAGATGGTGGAATATTCTTGTTTTTTGTTGGCTTTACTTTTTACTTAATTACATACTCTCAGATGGATATATAACCTAATATATAATTCAAATTCATTTGTGTATAAGTTTGTATATAACTTAAATAATGGCTAGACTGATAATTAAAAACTCAATAATTCACGCTAAAAAATAACCCCAATTTCTCAAATAAGTTGGGGTTATAGGGTTTATGACTTGTATTCTATAATTCA # Right flank : GGCTAGGCTATGAAAGCCTTACCTGGTGGAAATCCTACAGCAGATTTTCGGGGCTTGTCAAATTTATGCAAAATCAAGAGCCTAAATTGAAAATAACCCTGGATAAAAAAGCCTGAAACCATTACTGTGTAACCCTGCCGGGGCTGCCAACGAAAGAATCAGGGTTTGGGGCTTTGGGCTTCAGCCCCGAAACAAGCAAACAGTTAAGTTTTACTTATCCCAAATCATCGGACGATACACCTCAACCTCACCCATTAAACAAGCAATATATTCTCGCACCTGTAACTCGATACAACGGCGATAAGGCAATTTACAATCGGTATGAGGATGAGTTACTTCTGTTTGTAGCTTTTCCTCCCAATGCTTGAGAAACTTTTTGAGTGCATGAGGTTGAAAATACACTCCATTACGTTCATCTGGTGAGGTAAAATCGTCAATTGTAAACAGGTTTCGATTTACTAGATATATTACCAGAGAATCAACAACCAAAGCCCGAAACT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAGTTCAACTTTCTAAGAAGTTAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 5950-5407 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018170.1 Anabaena cylindrica PCC 7122 plasmid plasmid4 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 5949 36 100.0 37 .................................... GGGGGTTTGTTTATCAATTTCCGTAAAAGCGGAAGGT 5876 36 100.0 35 .................................... TTTTGATACGGGTTCGTTGTTATCACTAGGATTGT 5805 36 100.0 38 .................................... ACCATCGTTGGTGGGTGGTAAGTTCCAGCCCGAAAAAT 5731 36 100.0 32 .................................... GTAAGTTCAATTAGGTGATATTCAATTGAGTC 5663 36 100.0 34 .................................... CATAATTATTTATCACCAATACTCCAGAAAAGCC 5593 36 100.0 43 .................................... TTTCTGTTTCCTTATTAATTTTTTTGAGGCTGGATTTTGTAAT 5514 36 100.0 36 .................................... TTAGTAGATAGATATTGAAGGAATTGTTGCAAGAAC 5442 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 8 36 100.0 37 CTTTACAAAACCACTTCCCCGCAAGGGGATGGAAAC # Left flank : TGTATCAAGGCTTGGGCATCCATCACTGGTTTTTCTTTCCTAGCCCCTGGTGATAGGTGTTCAGTATTGGAGAATAAACTCAGTTGTTCCATCTTGAAAGCAAATAACCACCAGTTAATTATCGCAGATTTTTCTTGAGGGAAATTGAAAAGGCTGGTAGGGTAGGCGATCGCTCAAAGTAAACTATCTGAACTTACTTAGTATTTCTACACAGAATTTAATCATTTTAGCGTTACGTGAGTTTTCCCCCAATAAAAAAGCTAACCACTTGACAAATCCCTGTAAATAATATACTTTCGACAATTATGTAACAAGTTTTCGACACACCTCGCCCGAACCTTGAAAACCGCATAACTTCGTTAACCTGTGTCGATGCCTTACTGTGTAAGGATTTCAGGCAACAAATTTCATGAATTTGAGAAATTTTTTTCTCACTTTTCAGAGGTGTGTCGATTTGGGTATCTGAAACCTTTGCCTAGTAAGCTTTCCAGAAGTGAACT # Right flank : GCTACAAAAATTGCCAAATCAACCAAGAATAATCTACTTATTGCTTGCAGCACTGCCGAAGGTGCGGATACCAGAAGCGATCGCTCCTCCCATAAACCACGACGATAGTTTGATAAGCAGTAGCGATATTTAATTATCAGCCTGTCGGTATTGTCGGTTTTCAGTTCTTAGGGGAAAATAAAGCGATGGGCTTCGCCCCGCCGTAGGCGATCGCTTTGCGGCACTTCGTGAACGCTCCTCAAATCAGAATATGCTTATTTTTTAGAAGTGTTGGGCATCGTTTTTAAAACTATTGATTCCCCCGTCGTAAAATTTTTGAACAGCTTTTTCTACTTGTTTATCTGTTAAATCGTCAACATCTTCATCTTCTATATCACCCCAGCCACAATCTTTTATCCAGTCTCTAGCTAATTTTAATTCTTCTTGAGATAGTTCTAATTCTGTATTCTTCATATTCTTAGGGGATAATTTTTAAGCGATGGGCTTCGCCCCGCCGTGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAAAACCACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 26873-27200 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018170.1 Anabaena cylindrica PCC 7122 plasmid plasmid4 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 26873 36 100.0 36 .................................... TCTAAAGCAGTGCAATCTGTCGCAACTTCAATTAAA 26945 36 100.0 36 .................................... AATATAGTCACAATCTACCTTTCACACAAGTAGAGT 27017 36 100.0 35 .................................... TAGAAACCTTTACAGCTAAAGATAAAGAGCTATCT 27088 36 100.0 41 .................................... CTGATTGACATCGGGTTATGTGAAGATAACACGGAAGAATA 27165 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 5 36 100.0 40 GTTTCCATTCAATTAATATCCCCAGCGAGTGGGAAT # Left flank : TACCACCAGAATCATCGGGGGTTTTGCCAATTTCTACCCAAGGTTTCATTACTTCTAGTTGTTCGTAGAAGCTATTTTTACCCCGTCCTGTGTTGTCATGTAATGCTTTTAATACAGGGTCATGTAGTAACCCCCAGATTTTAGCCCGCCAATATTCTTCTGACACCAGTATTTTCCTTGTGTAGCTGATATTTACATTGTATTAGCGAATTTAAGTATTTGTCTAGGAATATAAAATATTGCAACATCTCTATCAATAATTCCTATAATGCTTTCTTTGTAAGCTTTTCCTATCCATAAGGATTTTATTACAAATATTTTTTTGTATTTGACATAAGTTCTTATTTATGCACGTATTAAACTATAGTTTTTATTCTAACTAAACTTTTGTAGTTCAAATGTATTGTATTGGGCGTTGCTAGTACAAGCTTTAAGAATGTAAAAATAAATACTGTTTAGTTGGGGAAGCGATCGCTATTGCTCTTAAAGCCGTTAATATC # Right flank : TTAGATGAACTTGTAAACTTTGGTAGTAAATCACATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAATATCCCCAGCGAGTGGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 3 29511-29087 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018170.1 Anabaena cylindrica PCC 7122 plasmid plasmid4 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 29510 36 100.0 43 .................................... CAGATGGATCGAGGATAACTAGGGGGAGTAGGGAAGAGGGCTA 29431 36 100.0 39 .................................... GTCGTAATCAATTGATTCTTCAGCAGCCATTTTTGCAGA 29356 36 100.0 49 .................................... ACTATTTACGGCAGCTAGATGAGGACTTAGCTGATTCTACTGATCACAA 29271 36 100.0 36 .................................... TATTCGTAAATGTTGAGCATCGAACTTACCGCTTTC 29199 36 100.0 41 .................................... AAACAACTATTAAATGAATTACCAGATAAAGCAGTTTACAC 29122 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================= ================== 6 36 100.0 42 ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Left flank : TTATAAACCGTATCGAATTGACTAAAATTATGTTATGTTTTTGTATGTGATTGCTTATGATATTCCCTGTAATAAACGGCGCAAAAAAGTGGCTGATTTATTAGAAGGTTATGGACAGCGTGTGCAGTATTCTGTGTTTGAATGTCAGTTAAATACCGAAAAATATCAGAATTTACGCCGTCAATTGAGAAAAAAGCTGAAGTTAGAAGAGGATAATGTCAGGTTTTATCCTTTGTCTCGACATACTTTGTCTCAAGTGGAAACTTGGGGCGTGGGAATACCTGTAATTGAACCACCTAGTTCAATTATTATCTAGTTGTTTCTGAAGTTTGGATAAAATGGCTGGAGTGTTTATTTTATGGTTGTGAACTTCGGTTACTTATTGGGTAAGGGTTATGTAGTTTTTAATGGTGGTTTTGTGATCTGTTTAGCAGCGGTTTTTGCTGACCTTCGGAAAGTGGGTCTAGACTCCTTAATGAGTAAGGGTTTAAAATAGAGGT # Right flank : CCATAGATTGAGCAGGTAAACTAACTACCAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 699523-699108 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018166.1 Anabaena cylindrica PCC 7122 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 699522 37 100.0 38 ..................................... CTTTGTACGAGCAGACAACATTTTAGTTTTCCTCCAAA 699447 37 100.0 36 ..................................... TCACCCCGCTGCATCCATTCCTCTACTTTTTCAAAA 699374 37 100.0 38 ..................................... TTTTATGATCGAAGAAATCAAGGATAGCTGTACCTCAA 699299 37 100.0 39 ..................................... TCCACAATCCGCGTTTGCGATCGCAATTAGCACCCCCCG 699223 37 100.0 42 ..................................... AAGCGAGAGAAAGAAATACCAGAAACAGAATATATCGTTGAG 699144 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 6 37 100.0 39 GTTTCAACTACCATCCCGACTAGGGGTGGGTTGAAAG # Left flank : CTGCGCTAATTTAGTTTACTAATCCGAACCTTGACAATATAATATGGATACAACAGCGCCGTAGTTCATGCTCCTTGGAGTCTCTGTACTATGAAAAATCTGGCTTAGTTTGGCAGTTGGAAGACTGTCATGCTTTCTGAGCCTGGTAGCTGCCCGCTTCTGATGCTGCTGTCGCAAGACAGGATAGGTGCGCTCCCAGCAATAAGGAGTAAGGCTTTTAGCCATAGTCGTTATTTATAACGATGTGGATTTCCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAATCCTCCCAAATCTTTTTTTTGGCGAACCATAAGCGGGGTCAAAAACCCTGGGGATCTGCCAAAACCTTGAATCCCTTGTCCAGTATTTATTTGACTCATTTGAAGAGTGATGAATGTCCTCTATTGAGAGCAAAAAAACAGATTTTTTAACAGGTTTGCCAAAATCGCATCTGGAAACCTGTATTGGCAAGGGTCTAGACGGGCGCG # Right flank : ATAACTAGAATTTACTTGCGTTAACCATTAAAATAAAATGGTTGCAAAATAGAAATGATCATGGGAGGGTTGAAAGGAGTGCTGCGATCGAACACATATCAATAATCCAATAATGCCCTTGCAGCAATAATTTATTGTATAGTAAATGTTAAGTTCATGCGACATTAATTTGCGAAAACTTAGAATAATTAAATTGACTCTGAAAAACAACCACCACGACATTAATTTGCGAATAACGACACTAAATTGCGAAAAGCGACATTTAATTTGCGAATGTACATATATAATGGAGAATAGGAGACTCGAACCCCTGACCTCTGCGGTGCGATCGCAGCACTCTACCAACTGAGCTAATTCCCCTTGCTAGTCTCAAGTTACTAACTCAGACAGCCGTACTATATGTTAACACTCAGGCAGGGTAGTTTTCACCTCTTTTTGCAAAAAAACTTCCTGTACCCGGTCTAATTCCAAATCAGTCAGATAATCTACTGTCCAGTTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTACCATCCCGACTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 1176297-1176070 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018166.1 Anabaena cylindrica PCC 7122 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 1176296 35 100.0 31 ................................... CGGTGCAACCCCACCCACAAATTATCATCCA 1176230 35 94.3 28 .....A..............A.............. TGGTGGAAACACAAATCACCCTGGTCAA 1176167 35 97.1 28 ....................A.............. TGGTGGAAACACAAATCCCCCTAGTCAA 1176104 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =============================== ================== 4 35 97.8 29 TCACCGAGTAAAGGTCAGGCGGGATCTGGCAGTGG # Left flank : CTCAGATTGGTATGGGTTTCGGTTGGAGTGGCGTAGGTTTAAATGCTGGGGTTTCCTTCGTTCCTGTGCCTACCATTCCCTTGATAATTACGGCTCAAGGTGCTGATCTCACAGATAACAGTTTCGGCGGTAGGATATTTGTTCTGACTGTGGGCTATGGTTTCAATTTCCTACCTAGATAGGTTTGATAGCATCAAAAATCAAACAATGCATGAAGGTTTTCAATGATTATGAAAACTTTCTAACTTCTCCTGCTGACTCCTAAAAGGCGGTTGCTCTTGGGAAACCTCAAGACCGTACTGCCTTCTCTTGATTCCTACTCTATGGCTTGCGTCAAGCCACTCCTCACGACAAAGTTTTTCAGCCAACTCTAAATCAGCACTTCAATATCGACTATCTAGAGAATCACCATGTTAAAAATTAGAACCTTTTTTCTCGCTCTGGCTTGTGCGCCTTTAATTTCACTTTCTTTACACTTAACGAATCAAGTCCAAGCGGGT # Right flank : AGCAAATTCATCTAATATCATTGTTACAAAAGAATTGGATGGGTCTATCAAGATTACGCTTTTACCTGATGCTGTAAAGAGGCTAAATGATATTGCTGCTAGACTGCGTGCTAGTGGAAGGGATAGTAGATTTACACGGGTTAAAGCTATTTTACTTCAGAGATATTTCGTTTTAAATGGGATTCATCCACCATTAGCAAAAGCATTCACAAGTGTATTACCAAATATTTTCTTGACCTCGTCCGATGCTTCTACTACACCCAATCTTCCTTCAGTTCAGTTACCACAAGGAAAGTTAATAGCCAGCATTAAAGCTTTGAAAGCTGGTTTAACAATTGCTGAGGCTAATGAAGCACCAACTGTGAATGTTGATAAATTGAACGAAGCTATTAATATCCACAACAAGATTGTTCTAGAAAGCGATCCAGCAACTTTTCAGCAACTTGTACGAAATTCAGATTTTGTGGAAATTGGTAAAGCTCTCACAGAATTAAGGGCTG # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACCGAGTAAAGGTCAGGCGGGATCTGGCAGTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 3 1381635-1379760 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018166.1 Anabaena cylindrica PCC 7122 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 1381634 37 100.0 38 ..................................... ATCAAGAAATTCGTCTGTAGCTTCTGCTGCCACATTTT 1381559 37 100.0 33 ..................................... GAGAGAGTTGCACTTTTAAAAGGTCTTTTAGAT 1381489 37 100.0 45 ..................................... AGTGTCCAATGCTTTGTTTACCTTGTGGATTAATAGCGATCGCCA 1381407 37 100.0 38 ..................................... CATTTATTAACCATTGATGAATTATTTCAGCGTCATCA 1381332 37 100.0 34 ..................................... CATTTGATAACTGTGTAGGTGTGGTGAATTGCAC 1381261 37 100.0 34 ..................................... CTCAATAGCTTGCACATTGATACCTAGCCGTCTT 1381190 37 100.0 36 ..................................... GTTTTTGGGCATCTGGCAATGGTAGGGGTTCATCTG 1381117 37 100.0 33 ..................................... ATCAAGGTAAAGTACGATTGTTATCTTATCCAT 1381047 37 100.0 37 ..................................... GGTACATCGGAAGAAACAACCGATACCAACCGCACAC 1380973 37 100.0 36 ..................................... AAATCGATAGCTGCAATCCAACCTAACGAGTTGGTA 1380900 37 100.0 32 ..................................... CAGGTACGGTAACTTTCCGTCATGCACATCTC 1380831 37 100.0 35 ..................................... ACTTAGTTTTTCTTGCTCTGACATTTTAGCCCCTA 1380759 37 100.0 42 ..................................... GTCCATCAGCCCAAACCTCCAAATTCACGGTAGAGTCCTTAG 1380680 37 100.0 35 ..................................... CCCTCTGTGTACCGCCCCAAAGCTTCACGCCAACC 1380608 37 100.0 35 ..................................... AAGCGTTCCTGGCGGACATCCTTCGATGCACTCCA 1380536 37 100.0 38 ..................................... TTCGCCCAAGCGAGTCCAGAAGATTTTGTAATCCGTAC 1380461 37 100.0 35 ..................................... ATTCATGTTTCAATCAGTTTTATAAACTCCTCATA 1380389 37 97.3 41 .......................A............. CGGGCATCAAACCCAACTGATCCGATACAGCAAGCAGCAAG 1380311 37 100.0 41 ..................................... AAATAGCTCATTCCATAAAAGCTGGGATACTGTTAAAAAAA 1380233 37 100.0 37 ..................................... TTGAGATTTTAACTGTAGTTTCTGCCAATGCTGGGGA 1380159 37 100.0 35 ..................................... ATACGGGTGTAGCTTTCAACAACATAGAAACGCTA 1380087 37 100.0 39 ..................................... GGGTAGGATTCGCCTGTTTCGGGGACAAAGAACGAATTT 1380011 37 100.0 33 ..................................... ACGAAAGAGGTGAAAAAAACCACCGATAAAGTA 1379941 37 100.0 35 ..................................... GAAGAGAGCCGCCAAAATCCTGTGAAGAAGCAAAA 1379869 37 100.0 36 ..................................... ATAACTGAATCAACGAAATATTCAACGATTTTTACT 1379796 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================================= ================== 26 37 99.8 37 ATTGCAATTTTCATTAATCCCTATTAGGGATTGAAAC # Left flank : AAATCGCCAGGAAGAACGCGCACCTTTTGTTTGGACAATTTTGTTATTTGTTTTGACATTTTTGGGTTTGGGTTTGATTGTTTTTCCTTACATTATCCCCAGACAGATTACAATCTATGAAGCTGCTGCTGATCCCAGTTCGCTGGTAATCATGATTATTTTTATCGGTTTCCTGATTCCGGTAATGTTGTTTTACAATCTGTATCAGTACATTGTCTTCCGGGGTAAGGTGACTGGTGGAGAGTATGGAGAATAGTTGACAACCAGCCTTTTAGCGCGGCTGGGTAGGTGTAAAAAATCAAGAAACTGAAAAAATGTCTGTATCTCTTGATAGGCTTGGTTTTGCGGCTGTTCATGTTAGTCACCCATCCGCGCACCTTACCCAGACCGGGTTTCAGCGATTTTCATTCTTGACACAATTTCTGAAATGGACTATGATAAGAGCGATCGCGCAACCGTACCTTGAAAACCAAATACAGACAGGCTTCCAGGATGCCGCT # Right flank : TCACACATTTACTAATGATTTAGAAAATAAAATGATTCTGATCCCAAATTGATATGAAGTCGCATGGAATAAAATATCAAGAATAATTGAACGCAGATAAAGACGGATAATTCAATTGATATCATCATTCTGTGCAACCTTACATATACTGCAAAAGGGTAAAACCTGAACTTATGTCATACTGATAAGATTTTTTTATCTTTCTATCCTACTTAAAAAATTGTGAAAATCGGTTTACAAGTGTAGACATTAAAAGATAATAGAATTGACAGTAATTAGAGGAGGCTAATTTCACCCATGAATAAATTATTAGATGAATCACTATCTCTGCAAGTTGCTGAAAGCATCAAAAGTAAAGCTAAAAAACCTTTTGAGAATGCTTATAAAGCTGCTTTAGCAACTGAAGGATCAAGATATGTTCAAGGTTTTTTAGTGTTTACTGGTCAGCCATATAAACCTGTTGAACATGGTTGGATTGAATTAGATGAAGTGATTATCGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTTCATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 4 2003899-2003647 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018166.1 Anabaena cylindrica PCC 7122 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 2003898 36 100.0 38 .................................... GTCCATTCTTCTTCAGTTTCTTTAGCAGAATCAACTAT 2003824 36 100.0 31 .................................... ATACAGTGGTATTCAGGTTACCACTGACCTG 2003757 36 100.0 39 .................................... TTTCATTAACCCAACCATTTCACCACATTGTTGTTCTGA 2003682 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 100.0 36 CTTTACAAACCCACTTCCCCGCAAGGGGATGGAAAC # Left flank : AAAAGCTGCGGGGTTATCCACAGATTTATTTTGCTCAAGGTAATTATGCCTGGGGTATTTTGGAAGCCTTGGATTATTACGACTTTTTTGGTAATCTGTCTCAAAAACAGCCAGAAATGGTGACGGTTTAGGTTGCGATCGCACTAAGTGATTTGTGAATAATCAGATCTCCGACTTCTTTTTTTAAACTTGTCAAGAAATTATGAATTGATGCCAGAAGTCGGGGATTTTAGATTTTGCAAGCGGGAACATTTTTAACATTTTGGGATTGACATTTTCAGTAAAATTATCTATTTTAATGTGATATGTTCAAATTTATCGACGCACCTCGCCCGAACCTTGAAAACCGCATAACTTCGTTAAGGTGTGTCGATGGCTTACACCACAAGGTTTTCAGGCTACAATTTCGACCATTTCTGAAACTTTTTTTTCCATTTTCAAGAGGTGTGTCGATTAGGGTATCTCAAACCCTTGCTATGTAAGGTTTCCAGAAGTGAACT # Right flank : ACATCCAATACCCTAATTGCTGATCAAATCGCTTTTTTCATCCTGTTAATCCTTTAATCCTGGACATCCTGATTCAGACAGTTTCTCCAAAACTCCCCAAAAATGTCATTATAGTAAAGGTAAAAACGCACTGGAGACAAAGCCACGGTTTACGCACGCCCTTTAGCCCGGTTAATTGAGCAACTGCAACGCCTTCCCGGAGTTGGCCCCAAATCTGCCCAGCGTCTAGCGTTGCATATTTTGAAACGTCCAGAGACAGAAGTAGAAGCCTTAGCACAGGCCATGATTGATGCAAAAAAACAAATAGGTTTGTGTCAAGTCTGCTATCACCTCTCATCTGAACCTGTATGTGAAATTTGTCGCAACCCCAACCGAGATAATAAAATTATCTGTGTAGTTGCAGATTCCCGTGATGTAATTGCACTAGAAAAAACCCGCGAATATAAAGGCAAGTATCACGTTTTAGGTGGGGTAATTTCCCCAATGGACGGTATTGGCCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAAACCCACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 5 2097436-2095360 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018166.1 Anabaena cylindrica PCC 7122 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 2097435 37 100.0 41 ..................................... AAAACTGGAGAATGTACCTTGAATGCCGAGGGAGTATGGGA 2097357 37 100.0 39 ..................................... AAGTAAAAGCTGGGTATTTGCCTCAACTTTTTCCCAGTA 2097281 37 100.0 35 ..................................... AATCCTGAGAAACCGTGGGAAGATTCGGTTAACTC 2097209 37 100.0 39 ..................................... ATCTTAGTCATGAAAAATGGATCGCTTTATGGAGACAAT 2097133 37 100.0 39 ..................................... AAAAGCATCTATTCCCAATTCTTTAAGTACTGGTAATTG 2097057 37 100.0 33 ..................................... TTCACTATCACCCAGTACCCTGATTCTCCTTGG 2096987 37 100.0 33 ..................................... CACATATTTTACTCTCCCCTTCTAAAACATTCT 2096917 37 100.0 35 ..................................... ATTATGGCAACAGGCATTAAGTCCATTGTCCATTT 2096845 37 100.0 36 ..................................... TAGATTTTCAGAGAATTGGAAAAGCTGTCGTTGCTT 2096772 37 100.0 33 ..................................... TCCGCTTCTAGCTGAGTAGGGAAAACGCAGTCA 2096702 37 100.0 39 ..................................... GTTACTGTTCCAGTTACAGGCGCGGGGTATGCACTTAGG 2096626 37 100.0 35 ..................................... GTCCGGTGAGGGGAAGTCCAGTGGTGGTACATATC 2096554 37 100.0 33 ..................................... TTATAGATTTTCTACTAGATATTATTCTCTAAT 2096484 37 100.0 44 ..................................... AAAGAAATATCTTCGCCAGTCCGCAATTGCATTATTTTTGGGAT 2096403 37 100.0 34 ..................................... TTTAATATTAAATACCCCAGAATTTTCATACCAA 2096332 37 100.0 35 ..................................... TTTACACACCTGATACAAATTGCTTTGCAAAAAAG 2096260 37 100.0 37 ..................................... TCCACAAAACCCAGAAAGAGACTTTTTCCAACAGCAA 2096186 37 100.0 35 ..................................... TCCGCACTTCCTGACAATGAAAAAGTTATTTTATG 2096114 37 100.0 33 ..................................... AACACTTTAGGTCAACCTAGGCTTAAGGGGAAT 2096044 37 100.0 34 ..................................... GCTACATGGTTTGTTACTCCCAAAAAGTCAGATA 2095973 37 100.0 39 ..................................... CAAATCAATAATATTCATAAAACGCCCTGAGAAAAATTA 2095897 37 100.0 36 ..................................... AACCGAAATACTTGAGCTACAACGGCAACGGCAATA 2095824 37 100.0 39 ..................................... TATTAGATTATCTATTAGATAATTTACCCATACCATAAA 2095748 37 100.0 34 ..................................... TTTAGCGAATTGTGATTGATAAGTTTTTCTTTGA 2095677 37 100.0 33 ..................................... TTTTTCCAAATTAGGCATGAAGACATCTTCCAG 2095607 37 100.0 33 ..................................... TGGACGCTCAAAACCAATGCGCCAACCCCAGTT 2095537 37 100.0 33 ..................................... GAAGGAAGTATTTTTACAAATATATTTGCTACA 2095467 37 100.0 34 ..................................... AAAACTTTAGTATATTAACTGATGCCACCTACTT 2095396 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 29 37 100.0 36 ATTGCAATTTCTATTACTCCCTATTAGGGATTGAAAC # Left flank : TACACCCTACATCTCACACCAGTCCGGTATATATTGATGAGGGTGTGGTACATTATGGTGTTCCTAATATGCCAGGGGCTGTACCCTGGACATCCACTCAAGCTCTCAACAACAGCACTTTGCCCTATGCTGTGCAGTTGGCTAATTTGGGAATTAAGGCTTTGGATGTTAACCCAGCTTTGGCTAAGGGTTTGAATGTGCAGAATCATCGTTTAATACATCCGGCTGTACAAGAGGTTTTCCCTGATTTGGTGAGTTAATCATCAGCTTTTTCGCGCGGATGGGTAGGTGTAAAAAATTAGAAGTAGCAAAAAATGGCTGTATCTCTTGAGGGGCTTGGTTTTGAGGCTACTAATGTTGATGAACCATCCGCGCACCTTACACAGCATGGGTTTCAGCATTTTTTGTTCTTGACACAATTTCTGAAATGGACTATGATTATCCCATCCGCGTAATCGAACCTTGAAAACCAAATACAGACAGGCTTCCAGGATGCCGCT # Right flank : CAAAAGCGCAGCATTCAGCGAAGGTGGGATAAATCATTGCAATAATTTGTGTAGTCATAATTTATGCTAGTATTTGGACTATATGTATTTTATAATACTTCTCTTTGCTTTGCGTTCCAAACTTTAGAACAAAACTCTTGTATGGTAAGTTTTACATTGCTTATTTTATAAAGAGTCACAAAAGATAAATATGCCTAATTCTATCAAAGCATCAACTACAGGATTAGAAATTGTTGATAAAGCCCGTCTGCGTTTAGGATGGACTAAAACCAGTACAGCGCGTTGGTGGCAAGATGCTCATACTTCTAAAGCTACTTTACGCCGGTTCTGGCAGGGCGATCGCATTCAGAAAGAAATCTTCATTGCTATCTGTCAAGCTGTAGGTATTAATGAATGGGAAACTATCTCAGATTCATCTGATACCCAATTAGATATTACTACTCCTTTGATTGACTGGAATGAAGCACCTAATATTGAAAGTTTCTATGGCAGAAATGCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 6 2832487-2835090 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018166.1 Anabaena cylindrica PCC 7122 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2832487 37 100.0 37 ..................................... TTGAGATAGCTAATGGTGCTAGTGAATTAGCTATCAG 2832561 37 100.0 36 ..................................... CTTTCTAAAATATTCACTTTTCCTTCTAGACTTCCA 2832634 37 100.0 41 ..................................... AAATAAATTTTCTAATACTGATTTTGAAAAACAAAGGCTTT 2832712 37 100.0 36 ..................................... CAGAAGCAGCCCCGTTGTACAAGCTGTAAACTTGAT 2832785 37 100.0 39 ..................................... CCACGCCAAAAGATTGTAGAGGCAAATAAGCATTTTGAT 2832861 37 100.0 37 ..................................... CATATTCTGCGCGTTCCTCTAGCTGTACTTCCTCAGG 2832935 37 100.0 41 ..................................... ATCCCGGACTTGTCACCAATTCAAAAAGCTTTAAATGATAA 2833013 37 100.0 37 ..................................... TCTTCGTCGTTCTGCTTACCGTGCAACTCATAGAAAA 2833087 37 100.0 35 ..................................... TGTTAGGTGGTCTTATTCGTGCATTTGGATATCGA 2833159 37 100.0 41 ..................................... TTGTAAACTCCCATAGAGATAGAATAAGTTTATCTAGATAG 2833237 37 100.0 41 ..................................... AGTATCTGATACTACACATACAGCACTTGCAGCACGTATAG 2833315 37 100.0 36 ..................................... CAGATTAGAGAATGGATTCAAAGCCATACTTGACAA 2833388 37 100.0 34 ..................................... TCCCTAACGTATTCCCGTATCTTCTGAAGGACAG 2833459 37 100.0 36 ..................................... ACAAATACATAACACCTACGCTTTATGATGTAATCT 2833532 37 100.0 38 ..................................... ACTAGAGTCAGGAATCCCGTCATTATCGAAATCTTCTT 2833607 37 100.0 33 ..................................... TTAATGTGTGGTTCTTGGGGCCATTCCTACCAC 2833677 37 100.0 39 ..................................... AATAAAGGAATATCAATCATATATGATTTGATTTTCTAT 2833753 37 100.0 34 ..................................... AATGATATCAGACTGATAAATAGCCAGAAGTCTG 2833824 37 100.0 34 ..................................... CGATCGCCTCTGTGGATGATGGTGATTTAGCCAA 2833895 37 100.0 33 ..................................... GAAAAATTTAGATAAGTTGTCAGACGAGGGACT 2833965 37 100.0 34 ..................................... AATACAAACCCCAGAAAACCGCCAACTGTAATGA 2834036 37 100.0 35 ..................................... GTTAGAACAACTCCAGCAGCAGTAACAGACCGAAC 2834108 37 100.0 34 ..................................... GTTTCCTCAGCTTGACTGGTGGGGATAAGGTCAG 2834179 37 100.0 36 ..................................... ACAATAATATATTAATGGTTCAGATTTTGAGAGATT 2834252 37 100.0 35 ..................................... CGATTTTCCCCAAGCGATAATTGATTAATACCATA 2834324 37 100.0 34 ..................................... ATCACGATTTACTGATACAAACGAACTACCTTTT 2834395 37 100.0 35 ..................................... ATTGGAGACTTATCTAGTGCGTAAGAGTAGAGAGC 2834467 37 100.0 39 ..................................... GTTGTCGTTATCGTCAATACGACAAGCTAATTTTAATGA 2834543 37 100.0 36 ..................................... GACAATTAAGATTGCATTACCGTTTTCTTCTTTGAT 2834616 37 100.0 34 ..................................... ATTTAATTCCAGTTCTCTCACAAACCATGTCTCA 2834687 37 100.0 40 ..................................... AATCACGCTTTCAATAAAGCTATGATGCTGTCGGACAATG 2834764 37 100.0 38 ..................................... TCGCTGCCTCTATCAACCGTTTTTCACTTGGAGTAGTG 2834839 37 100.0 33 ..................................... TCTGCGTCCCACGTAATTCCAATTGCATACAAA 2834909 37 100.0 35 ..................................... GGCAGCAGCGCAACGCTAGGGAGCTTCCTAGGCTC 2834981 37 100.0 36 ..................................... AGAAGGTGATGCAATAGCTTTTCAAACTGATCAAGG 2835054 37 94.6 0 .......................A....A........ | ========== ====== ====== ====== ===================================== ========================================= ================== 36 37 99.8 36 GTTGAAATTTCAAATAATCCCTATTAGGGATTGAAAC # Left flank : ATGATTAGTTTAATACCGCAAAAAATAGGTATGGACAAATTTGAGATTACCTATGAAATTACGGTAGATGAGGTAATAGTTGCTAAGGCAATTACTAGGCACGTTTGTATTCATGCAAGTAGTAGAATTAAGCAAGAATTACCAAATGAGATGATTTCTTGGTTGGAAACGAACCGCAGAGACGCAGAGGGTGCAGAGAGAAGAAAGTCACGGGAAGAGATAATTTGACCATCTCCTTTTACTTCCTTGGCGCTTGCTGTTTTCTTCGCCTCATGCGCGGGCGGGTGGGTGTAAAAAATCTCAGTCAGCAAAAAATGGCTGAAATCTCATCTAGGCAAGCTTTTCCATACTTTTATTTGGTTCACGCATCCGCGCACCTTACACAGCAAGGGTTTCAGCTATTTTCACCCTTGACAGAATTTCTGAAATGGACTATGATAAGACCATTCGCGCAACCGCACCTTGAAAACTACATATATATAGGTTTTCAGCCTCCCACT # Right flank : CGGAAATCTCAAGCATTTTAGCTTTAAAAGCTATACTACAAACTAGGTAAAGCCAAATTATTATTTGCCAGAAAATCCTCGGCAATTTTTTGGAGTTGTTGACAGTTAATTTTTCCTTGTCCATTTCTGGGTAAGTTTGGTAGGGAAATCCAATGTTTAGGAATTTTGAATTTACCAAGTTGATTTTTGAGTTGAGTTTGAATTTCTAAAATAGAGGTATTCGGGTTTTTAGGAATATAAATAGCTGTTAATACTTGTCCCCAATGTTTATCAGGTATACCAATTACACAAACATCAATAACCATATTGGTTTTTCTAATCGCTGATTCAATTTCTGCTGGGTAAATGTTTTCGCCACCTGTAATTATTTTATCGCTACTACGTCCGATAATATGTAAATAGCCTTGAGAATCTAAAAAACCAATATCATCTACTGCAAAATTATCTGTATTTTTCCAAAGTTCTGGATAGTAACCTAAAGCTAAAGATTTAGCTTGAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCAAATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 7 3077567-3083775 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018166.1 Anabaena cylindrica PCC 7122 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================================================ ================== 3077567 23 100.0 48 ....................... CGGATTCTACACTTTGAGAAAGGATGTTAGCTAAGTTTCCAAATAAAT 3077638 23 100.0 54 ....................... AACCCTACTAATTTCTTGGGGATGAAATTTAACTTGCCGTGTTTCCAAATAAAT 3077715 23 100.0 51 ....................... CCTTCCTGAATCTTGGATTGATTCTCCTTTCTTCCTGGTTTCCAAATAAAT 3077789 23 100.0 54 ....................... AGCATCTACTAAGCTGCTAATAGATTGATTTTGTAAAGTTGTTTCCAAATAAAT 3077866 23 100.0 55 ....................... TATAGAAAATAAATCTATATCGGCTTGGGTAAGCAATCCCGGTTTCCAAATAAAT 3077944 23 100.0 50 ....................... AAAGTAGAAAGTTTGTTGTCAAAATGCCCCTGAGATGTTTCCAAATAAAT 3078017 23 100.0 51 ....................... CTGTTATATCAGCGGTTTTCCAACTGTTTTTAATAAAGTTTCCAAATAAAT 3078091 23 100.0 54 ....................... TCAACTGAGCAATAAAGCTCTTTGCTTCTTTTTCTCTTAAGTTTCCAAATAAAT 3078168 23 100.0 49 ....................... TGGCGATCGCTGCTGCAATCTGTTTGTGGTTTTCCGTTTCCAAATAAAT 3078240 23 100.0 52 ....................... TATCTGACTGGGCTTCTGATAACTGGTTACAACCCCTGGTTTCCAAATAAAT 3078315 23 100.0 50 ....................... AAGGTGGAAATCAACGGGTAAATCTTCATGCACCTGGTTTCCAAATAAAT 3078388 23 100.0 52 ....................... ATTTCTTTTACAGTTTCGACGGTAACTGTACCTTTAGGGTTTCCAAATAAAT 3078463 23 100.0 54 ....................... CTCCATAATCCCAGCAATCATTACTAAGGATTTACCCAAAGTTTCCAAATAAAT 3078540 23 100.0 53 ....................... CCCCTAAAGAGACTATCTAAAACATCACCGCTATTTTATGTTTCCAAATAAAT 3078616 23 100.0 53 ....................... AGTTTTAAGAAATTATCCTCAGTCGGATCTACATCACCCGTTTCCAAATAAAT 3078692 23 100.0 52 ....................... TTTGAAAACGGACATCCGAGAATTTTAAAACTCATCCAGTTTCCAAATAAAT 3078767 23 100.0 49 ....................... GGGCATTAACTCAAACTTTTGCAAACATTGGGAAAGTTTCCAAATAAAT 3078839 23 100.0 55 ....................... TTAAATCAGAGATTTCAACAAACCAAATGGGGTATTTCTAGGTTTCCAAATAAAT 3078917 23 100.0 51 ....................... TTACCAGCGATCACGCCTGTGAAGTCATTATTAGCAGGTTTCCAAATAAAT 3078991 23 100.0 48 ....................... AAACAACCAAAGCAAAGGAGATGCAGAGATGAAAGTTTCCAAATAAAT 3079062 23 100.0 51 ....................... AAACGCTATGTATATGATTATTAGGACACCTGAATTTGTTTCCAAATAAAT 3079136 23 100.0 53 ....................... AATTTGGAGATGAAGGTGGGCGGCTTGCTTGGATTCCTTGTTTCCAAATAAAT 3079212 23 100.0 47 ....................... CTACCCCTAAATCCAATGCAAACTGACGCACAGGTTTCCAAATAAAT 3079282 23 100.0 52 ....................... TCAATACCTTGTTTAAAGTATTTTTGAAAACAAAAAATGTTTCCAAATAAAT 3079357 23 100.0 51 ....................... ATTAACTTTTGGGGGGACACTCATGTTTTAATTACTAGTTTCCAAATAAAT 3079431 23 100.0 52 ....................... GTGAAGTTGAAACAGCTAAAACAGAGGAAGCCCCCACGGTTTCCAAATAAAT 3079506 23 100.0 50 ....................... ACGATCAGGAAGAAGTGAAGAAGTTGGTAAAGCCGAGTTTCCAAATAAAT 3079579 23 100.0 60 ....................... TTTGCCCTCTATTTTCTTAACTTCTTATATTATAGATTAATTCATCGTTTCCAAATAAAT 3079662 23 100.0 53 ....................... GGATCGGAACCCATCACGAACGACAATGCCATCGACAATGTTTCCAAATAAAT 3079738 23 100.0 52 ....................... TTTTCTTCTGGATGTACTCGCCAAGACTCAAATCGTTCGTTTCCAAATAAAT 3079813 23 100.0 49 ....................... ATTATTTTTAATAATAGCACGATGACACTATATATGTTTCCAAATAAAT 3079885 23 100.0 51 ....................... CCTATCTTCCTTATGTGTTCAATTACCTGCTTCTCTAGTTTCCAAATAAAT 3079959 23 100.0 52 ....................... TGCGTTAGAAAATATGCAGACATCTATAACCTAGTATTGTTTCCAAATAAAT 3080034 23 100.0 50 ....................... CAGCGATCGCATAATTGTTCTTGAAATAATTCTTGGGTTTCCAAATAAAT 3080107 23 100.0 54 ....................... GTCAATATTACATAGCTAGTGCTACTTCGGTGAAGGGCATGTTTCCAAATAAAT 3080184 23 100.0 49 ....................... TCATTATTCAAAATTGTAGGATTTGGATAATTACCGTTTCCAAATAAAT 3080256 23 100.0 51 ....................... CTGTCAGTGGCCAAGGCAAGCGATTAAGAGAAGTCGCGTTTCCAAATAAAT 3080330 23 100.0 51 ....................... TATTTTCCATATTTCTATATAAGCCGTATTCCCAATTGTTTCCAAATAAAT 3080404 23 100.0 49 ....................... ACAATGATGTTATTAGGAAGACCAAGCAATTGTGCGTTTCCAAATAAAT 3080476 23 100.0 54 ....................... CCCAAGATCTATACCAGATTGATGGTACTTTGTATAGGTAGTTTCCAAATAAAT 3080553 23 100.0 49 ....................... TTATTAATGTTCGACATCGACATATTAACCTCTGAGTTTCCAAATAAAT 3080625 23 100.0 47 ....................... ACGATTGGTTTGGAGTCTCTATCCCTGATGGGGGTTTCCAAATAAAT 3080695 23 100.0 57 ....................... ATAATTTCTTGGCTTCCTCAGCAAGTCCTTTAAGAGCGGGAAAGTTTCCAAATAAAT 3080775 23 100.0 53 ....................... TCCTAATGGATAGTAAGCTTTGTTTACATATAGTCTAGGGTTTCCAAATAAAT 3080851 23 100.0 49 ....................... TTAACACCGAAGCCCGTGCCAGTTGCAGCAACAGTGTTTCCAAATAAAT 3080923 23 100.0 48 ....................... GGGACACAATAAAGGTGTGCCAGCGCAGGGGATTGTTTCCAAATAAAT 3080994 23 100.0 52 ....................... TTAACTATTCAAATATGTGTCCGCTTCATGGTCAAAATGTTTCCAAATAAAT 3081069 23 100.0 50 ....................... CTAGATTATAGATGCGATCGCACCATGCCTTAACTTGTTTCCAAATAAAT 3081142 23 100.0 52 ....................... TTTGGGCTATTCGCATCAAGGCAGACGCTTCTAAGGTTGTTTCCAAATAAAT 3081217 23 100.0 48 ....................... CTGTATCGTCGCAACAATGAAAGAACAACCAAAAGTTTCCAAATAAAT 3081288 23 100.0 49 ....................... GAGAACAATATTACCCGAATTAAAGTTGATTTAGGGTTTCCAAATAAAT 3081360 23 100.0 56 ....................... TCTCCATCAATAATCACGATTTCGCCGTGCGCCATGTTTCCAGTTTCCAAATAAAT 3081439 23 100.0 52 ....................... GCATCTCAAACACCTGCTGAACCTACCGCACCTGTAAAGTTTCCAAATAAAT 3081514 23 100.0 52 ....................... TTGAAGACTTCAAACAAGAATATGGAGATTATTTTGAGGTTTCCAAATAAAT 3081589 23 100.0 50 ....................... ACACAAAAGCCTGCCAGCCCGATTGTCACAGGTTTAGTTTCCAAATAAAT 3081662 23 100.0 54 ....................... AAAACTTTCCCAAACCAATCAGCATCCGGAATTGAGAAAGGTTTCCAAATAAAT 3081739 23 100.0 51 ....................... GTTTTTCTTCTCTTATGGAATCTTTCTTTCTAGAATGGTTTCCAAATAAAT 3081813 23 100.0 48 ....................... GATTGAGGAGCTATTTGACTACGCTCTACAACTAGTTTCCAAATAAAT 3081884 23 100.0 51 ....................... AAAACATATCAACACTGCTGTCTATATTGGCTTTAAAGTTTCCAAATAAAT 3081958 23 100.0 51 ....................... AGATGCTAGTAAGCGAGGATAGCACGCTTGCTTATTAGTTTCCAAATAAAT 3082032 23 100.0 55 ....................... TGTTCCCAAGGAATTGAGCGATGGCACAAAATTAAATCCTGGTTTCCAAATAAAT 3082110 23 100.0 55 ....................... AAAGCTACAAGCAAGAAATCTAAAATTATTTTGCATGATAGGTTTCCAAATAAAT 3082188 23 100.0 48 ....................... ATAGGATTACTGCTGGCGAGGTGGTGACATGATAGTTTCCAAATAAAT 3082259 23 100.0 50 ....................... TCTATTCCTAAGTCAGCCGCAGATAGCCCAAATGTCGTTTCCAAATAAAT 3082332 23 100.0 54 ....................... AACCACTCAGGATGAAAAGGCCACACCCGCCGATAGCCTGGTTTCCAAATAAAT 3082409 23 100.0 55 ....................... GTCCACCTTCATTTTTTAGAGAGATACCCTTATATTGCGGAGTTTCCAAATAAAT 3082487 23 100.0 54 ....................... TTTTGTGAGGTTGTGCGAGGGATGCAATATTGCATCCCTGGTTTCCAAATAAAT 3082564 23 100.0 51 ....................... ACTACGTAAGAACCGAAAAGCACGGTCAGAATATAAAGTTTCCAAATAAAT 3082638 23 100.0 45 ....................... AATTCCCGACAACCAACCGATTATCCCCACGGTTTCCAAATAAAT 3082706 23 100.0 53 ....................... CATTTGAAGTTAACGACGAGGTTAAAATCCGTCGTCCAAGTTTCCAAATAAAT 3082782 23 100.0 52 ....................... TTCTTTCCCCGATTGTTTTTATAGAAACTATCCACTCAGTTTCCAAATAAAT 3082857 23 100.0 50 ....................... CGGATGGCAATATCAGGAAGAATCAGTTCCAGGGATGTTTCCAAATAAAT 3082930 23 100.0 52 ....................... AAAAGTCAAATTGCTAACCAATCCGAGAAGCAAGTCAAGTTTCCAAATAAAT 3083005 23 100.0 52 ....................... TTGAAGACTTCAAACAAGAATATGGAGATTATTTTGAGGTTTCCAAATAAAT 3083080 23 100.0 55 ....................... AAAGCTACAAGCAAGAAATCTAAAATTATTTTGCATGATAGGTTTCCAAATAAAT 3083158 23 100.0 49 ....................... TTTTCTGCTGCATGGGTTCAGGACAAGTGGCGACAGTTTCCAAATAAAT 3083230 23 100.0 50 ....................... ATTGGATTCCTTTTGAGTGGATTGACAAGATTTTCGGTTTCCAAATAAAT 3083303 23 100.0 50 ....................... AGGGATTGAGGTGGATTACTTAGGAAAGCGTCAGGTGTTTCCAAATAAAT 3083376 23 100.0 52 ....................... GCATCTTCAACCTCAGCCGATTCAGAAATAAATAGCAGGTTTCCAAATAAAT 3083451 23 100.0 51 ....................... ATTGTATAGGTGGGAGGTGTCCGGCTGGAGACAACCAGTTTCCAAATAAAT 3083525 23 100.0 53 ....................... ACTATTTCAGGGATTCCCCAAGGGTTTGGCATATTCTATGTTTCCAAATAAAT 3083601 23 100.0 50 ....................... TATTGCAGTGTATTGATACACGCTTATAGGCTTTTAGTTTCCAAATAAAT 3083674 23 95.7 56 ................T...... CCTCCTGTTTGAGCTTTGTAAACTGCCTTATCTCCAGCGTCAGTTTCCACATAACT 3083753 23 95.7 0 ..................A.... | ========== ====== ====== ====== ======================= ============================================================ ================== 84 23 99.9 52 AATCCCCGCAAGGGGACTGAAAC # Left flank : GCGTTTACGAGCTTGGCGACCAAAGGTAGAAATTCTATTACCTTATGATTTAAGACAAAAAATTGCGGCTGATATTACCAAAGAAATAGGACTTTATCATATATAATTTAGTCGATTTAATGCTTCACTATTTGTAACCAAATAAATCTTGACAAGTAACTTGCTACATTTTAACCTTAATATATAGCGGTTCCCGGTTGAGTGAGATACAAGAACCCCACCCCCAACCCCCTCCCCGCAAGCGATGAGGGGGCTATGATGTATTTAATTCAAATGCATACCGCTATAGCGATAAATTTGGCAGACCTAGAGCGGGGGCAAAAACCCTGGAGATCCGCCAAATTGCCAGAACCTTGATAATTGAATACTTTCAGCGTTTCATTAGTTTCAGTTGGCAGTTAACCCAAAGCCTGAAATGAGGTTTTTTAAGAGGTCTGCCAAAATCGTCTCTAGATTCCGCCCCCAGATTATGTTTCAGATGGCGGGGTTTCCAAATAAAT # Right flank : CCGTGTAAGATACCAAGTATAAAATAATGTAGCATCAAAAAAAAATGCCAAGAGCAGCTACATCCAGCAAACGCAAAACCCCATCAAAAAATACCTCTCTAGTATGGGCAGATAACACCGAATTAGTTGGCTTAGTCTTTGACCTAGAAGCGACCAATTCCACATCCCTATACTCACAATACACCATTGGACTTCATGCTTGGTTTTTAGACCAAGTGCGGCAAATTAACCCAGACCTTTCAGCATATCTGCATGATAGCGAATCAGAAAAACCTTTTAACATTTCTGCCCTCGCAGGTCAACTGCTTCCTACAGGTAAACAACTACAACTACAAGCAAACCAAACTTTAACTTGGCAGATAAACGCCATTTCTCAACCAGTAGTTCAGTTTTTGAGTCAATGGTTAACCCAACTTCCACCTACTCTACAATTAAGGGATGTTCACTTACAAATAAAACAAGTAAGTATTATTCATCCACCAACTACTTATAGCCAACTC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.36, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 4587530-4586685 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018166.1 Anabaena cylindrica PCC 7122 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 4587529 37 100.0 35 ..................................... TTAAAACTAGGTATCAAGGGTGGGTAGAAGCTAAA 4587457 37 100.0 37 ..................................... CAAGCTTTGACAAGAATGTTTTTGGAAGGAGAGAAGC 4587383 37 100.0 47 ..................................... CCAGCAGCACAGGTGTGTAACGTCATGCAAGAATTGGTTGCTACAAT 4587299 37 100.0 35 ..................................... GTAAATTCTTGATTCCAAGCTAATCTAATTCCCAG 4587227 37 100.0 37 ..................................... TAACATTGAATTGTTAGACATATCAGATCGTATTCAC 4587153 37 100.0 36 ..................................... AAACTGCTAGAACACGCTGCATTTTACAAAGCTCAA 4587080 37 100.0 34 ..................................... CGTTAGCTTCTGGGTCAAAAGTTAAGTCTTTAAC 4587009 37 100.0 35 ..................................... TGTGTAAGAGTTTCAGGCAATTGTACGCATGGGAA 4586937 37 100.0 35 ..................................... AGTGCTATTTGGGATGCAGCAAAACCAAGACTTGA 4586865 37 100.0 37 ..................................... CGGCTGTTTATGTTAATAAAAAGGCTTTCTTGTTTCT 4586791 37 100.0 33 ..................................... CAACTTTTAAAGCAAAATCAAAGTAGTACTTTG 4586721 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 12 37 100.0 37 CTTTCAACCCGCCCCACTCCGGGAGGGGTGTTGAAAC # Left flank : CCAGCAAGCAGTTGAAAAAAGAAGGTGAATGCGCCGATAAAACCAGAAGCACCAACACCTATATAGATAAATTGCCGCAAACCACGATAAGGGGCTGCTATTTCAGCTTTCAGGTGGGCATATTGTTTAGAGTTAAGACGATTTTGGGAATTTGGGTCTATCATAGGTAAATAATGCTATGATATCAAACTGTGTATGCCGATGTGGCTCAGGGGTAGAGCAACTGATTCGTAATCAGTAGGTCGTGGGTTCAAATCCCATCATCGGCTTTGGTGTACATTCGCACACTATATGTCTGTACATTAACAATTTATTTGTCACTGTTAACAAATTAATGTCATTTTTAACTAATTCGTGTCACTGTTAACAAATTAATTGTCCCTAAATGTCACAAGCAACACTGTATTTATATAGTGTTTTCAAGTGTTTTCAGAGTTAAACCCACGACCTACTGATCTTTCAACCCACCTAGATATTTTTTATTCTACTTGCATTAATGT # Right flank : TCCGCCCGACCAAACCCTTATTTAGTGACACTTCCAAAAGCAATTTTGGCGGATGTCCTAAATTTGCTCTTAATTTCCCTTTAAAGGGAACATTTTCAAAGCATCTCAACATCTGAAAAACAGACTAGACAAGGGATTTGGACTTTTGGCAGAACCCCAGGGAAATTGACCTCGCTTATGGTTCGCCAAAAATAAATAATTAAGGTGGATTCCTCCTTGCTCGGAGGTGATTCGGTAGCCACCACTGCGGTAAACCCGCACCTCTATTACTGGGGGCGCACCTTATTCCTGTTTACAAGAAACAGCAGCATCAAGGTGGGCAGCTACCAGGGTCAGAAAGCAAGACTGTCTCACAACAGTCAAACTAACCCACATTTATCTCAGTTCAGAGGTTGATCAACAACATGAACTGCGGCGCTATTGTTAATTACTATTCTATTATCAAGGTTCAGTGTTTTGTCAATCAGGCTTTTCGAGATTGATAGGCGTTTATGGCTAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCCCACTCCGGGAGGGGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.60,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 9 6025471-6027202 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018166.1 Anabaena cylindrica PCC 7122 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 6025471 37 100.0 41 ..................................... GGATGTCTTAATGCTCGTTGTTCTGTGGGATTCTAGGTCAA 6025549 37 100.0 38 ..................................... GAATAAAGAAAGTTGCTGATGTTTTTTAAGCATCCCAT 6025624 37 100.0 39 ..................................... TTTTATTAATTATTTATGCTGCTACTGCTGCCAAAGGAA 6025700 37 100.0 36 ..................................... CTCTCCACAATGATGAGAGAAACTCACAATCCTAAT 6025773 37 100.0 35 ..................................... ATCTGGACTAGGATTTTACGAAAAATGCTTCGCTA 6025845 37 100.0 41 ..................................... GGCTTTGGTCTTACCGGATATGCAGAAGGTGAAACCATTAA 6025923 37 100.0 34 ..................................... ACTTACTTGTTTAAGAGTGCTAGAAAATTAGTAA 6025994 37 100.0 42 ..................................... CAAAGTTTGCTCTGTCACAAGCCATATCCATACGCTACGCAA 6026073 37 100.0 34 ..................................... TACAGATGGTTTCAAAGACATACGTATTATCGTA 6026144 37 100.0 34 ..................................... CTCTGATTTGCAAAGTAACGGTGTTGGCGCAATA 6026215 37 100.0 33 ..................................... ATTCGACTAAACTAGTTACAGGTTTTATTTTAT 6026285 37 100.0 36 ..................................... TTATCTCCCTCTGGTTCAACTCAAAGAGGTTGTATT 6026358 37 100.0 38 ..................................... ACGGCAATAGTCCAGAAGAAACTTACCAAATTCTTCAA 6026433 37 100.0 41 ..................................... AGAACCAACACCATAAATAGTGGAAGAAATACCAAGCGCAG 6026511 37 100.0 33 ..................................... ATCTCTTGCTCAAAGGATTATCCAGGATTATTA 6026581 37 100.0 40 ..................................... GCGATGAAATAATGAGTGAAATAAACGCTCTAAGGGGAGA 6026658 37 100.0 36 ..................................... CACGTAATTTATCAGCATATTTATCTGGAAGCTCAA 6026731 37 100.0 33 ..................................... GGAGGAAGCCCCCCCGACTTGTTCGGGGGGGGT 6026801 37 100.0 37 ..................................... TCTTCTAGAAATATGAGGATATCTACTGATTTGAGCC 6026875 37 100.0 37 ..................................... ATTGAAACTAAACTCATCAGCAAATGTGGAAGAAAGA 6026949 37 100.0 34 ..................................... TCCAAGCAAGGCGACCACCCTCCTCACCAAATCT 6027020 37 100.0 37 ..................................... GTCTTTGGAATTTCAACTGGAATGCTAGTGATAAGCA 6027094 37 100.0 35 ..................................... GTGATAGGTTTGTCTCTTGTTCCTGGGTACGGAAA 6027166 37 94.6 0 ...................................TG | ========== ====== ====== ====== ===================================== ========================================== ================== 24 37 99.8 37 ATTGCAATTTCTATTACTCCCTATTAGGGATTGAAAC # Left flank : GATGAATGTTGTTGTTTCTTACGATATTTCTGAGGATAAACGGCGGACTAAAATCCATAATATTCTCAAGTCTTATGGACAATGGGTGCAGTATAGTATTTTTGAATGTCAGTTGACTGACACTCAGTATGCTAAACTGCGATCGCGCCTCAATAAGCTGATTAAGCCGAATACTGATAGCATTCGCTTTTATTTTCTTTGTGCTTGCTGCTTTGGTAAGGTGGAACGAATCGGTGGTGAACAACCCCTCGATACGACGATTTTCTTCGCTTAATGCGCGAGGGGGTGGGTGTAAAAAATCTGGGTTCTCAAAAAATGCCTAAATTCACATCTATACAAGGCTTTGATGGATTTTTTTGATTCGCCCGCCCGCGCACCTTACACAGCAAGGGTTTCAGCCATTTTGACTCTTGACACATTTTCTGAAATGGACTATGATGAGAGCGATCGCGCAACCGCACCTTGAAAACTATATATATAAAGGCTTTCAGCCTCCCGCT # Right flank : GGCACTAAGAAAAGAGATCAAAAATCTCGAATCACGCTCTAGCAATAGATTTGAAAGAATCAAATAGAGAAGTGCTATTCAGTATATTGAAGAGATAGGTAAAAAGAGATACTAAAAAAATACTGTAGAAAACGTCTCTTAGAGTCTGAGAAACTAAACCAGACCATAAGAGACAACAAAAAAGATTAGCTACAGTATGCCAAATCGAGTGAAAATTCTCAAGGAAAAATTTAGTCAAAGTGTGGGATTACCCTTTGCAGAATTACTACCGGAATCGGTAATTAATGAGAGTATTCAAGAATTAAATCTAAAATATCACCAAAGAATATTTTCACCAGTAGTAAGGATATGGGCATTTTTATCGCAAGTGCTGGATGTAGATAAAAGTTGCCAAAATATAGTGAGTAGAGTAATAGCATGGTTGAGTACGACAGGAGCAGAATTGCCATCAACAAATACAAGTGCATATTGTCAAGCCAGAGAAAGATTACCAGAGAAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //