Array 1 768461-765138 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFBR010000008.1 Streptococcus uberis strain GCPRG106 Contig_8_226.147, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 768460 32 100.0 35 ................................ AAGCTTTTTGACAACATTGCCGACAGTCAAAGTCA 768393 32 100.0 35 ................................ AACCGAAGATTATTATTTGGTGTCAGCTAGCAAAA 768326 32 100.0 34 ................................ CGACATTAACAATAAACTCTGCAGAAGTAAACTT 768260 32 100.0 33 ................................ ATGCACAACTGCAACAAGATGTCTTTGGGTCTC 768195 32 100.0 34 ................................ TGTAATTGTCTGATAGAAAATTATTTTCTTGCCA 768129 32 100.0 33 ................................ TTAGAAACTGAACCTGATGATAGCTGGCGTTAT 768064 32 100.0 33 ................................ AAGGAAAGCCATTAGTAACAAGAATGTACTTAG 767999 32 100.0 35 ................................ TTATACCCATTTTAGCAAAATTGAAAGGGTAAATC 767932 32 100.0 35 ................................ ACACTAGAGAAATCACAACAACAAAGACCAAAAAA 767865 32 100.0 33 ................................ AGCAACAATGTTGTCTGGTTCGTCCATCTTGTC 767800 32 100.0 33 ................................ ACGTATTTCAAAAACCCTGGTATGAACAATAAA 767735 32 100.0 33 ................................ AGCATCACGCACAGACAATGCACCTAATTTATT 767670 32 100.0 34 ................................ AAGCAAGTTAGATGGTTTGTTTCGTGTGAATTTA 767604 32 100.0 33 ................................ AAGCACAACAAGCTAAGATTGACGCATTAAAGC 767539 32 100.0 34 ................................ ATTTACTGCGATCGCTAACCAAGATGGCCAAATC 767473 32 100.0 33 ................................ AGTTATCAATCGACAAAATGTCAGCGCGTAATA 767408 32 100.0 34 ................................ AACAAATTACCAAAGAACAAGAAGAAAGATTATC 767342 32 100.0 34 ................................ AGGTCTTGAGGGTTCTGCAACAAAAATTCCCGGC 767276 32 100.0 34 ................................ ATGAAGACCAAAAAATGTTACAACAAGCAATGGA 767210 32 100.0 34 ................................ AAAGCTGTTAAGTCCAATGTGCATATCTGCCAAC 767144 32 100.0 34 ................................ TGGTACTCATTTAGATAATCAAAATCCATTTAAC 767078 32 100.0 34 ................................ ACGTTTCCATTTGTCAAATTCAGCAACAATGTTG 767012 32 100.0 33 ................................ TTGTAAATTAATCTAACCAAGAGAAATAATATC 766947 32 100.0 33 ................................ CTACAGGTGACTTAATCGCAACACTTGGAAGTG 766882 32 100.0 33 ................................ TATACCAGACTGAACAGACACAATTGTGGTTAA 766817 32 100.0 34 ................................ TCGTCTCTCAAGCGAAAGACGGTACACTTTTACC 766751 32 100.0 34 ................................ AAATGCTAATTTCCGCATTTCCATTTGACGAAGC 766685 32 100.0 34 ................................ AATGACGTTTATTGTTGTATCAAGCGGTGATGAT 766619 32 100.0 33 ................................ AACTGCTATCAATTGAAAAAGAACGTAGTAATT 766554 32 100.0 34 ................................ TTTAACTTTGTTATCTGTGATGACAGTTGCTTTG 766488 32 96.9 35 ........................G....... ATTTGATGTAACAGCCATACTGCGAGCCAACGTAT 766421 32 100.0 35 ................................ AGAAGGAGTTGAAGATTTTGTTGAAGCAAATTACG 766354 32 100.0 35 ................................ AATTGACACATTTGAACCCTCGGACAATATGCGCA 766287 32 100.0 34 ................................ AGTTTAAAACCGCCAATGTGACTGGTACAAACCC 766221 32 100.0 35 ................................ ACTAGTGTCTGTGTAAGTCTCAACTATTAACGTTC 766154 32 100.0 34 ................................ ATTTATGAATGGTTCGGTTACAACTTTTACCGCG 766088 32 100.0 33 ................................ TCTTATGATGTCGTATTTTGTCATTCTTGTACC 766023 32 100.0 33 ................................ TAAAACTTTAAAAAATTGAGCAATTGGATCAGC 765958 32 100.0 33 ................................ GGTAAAGTTATCGTAGTTGTATAGATTGTCAAA 765893 32 100.0 33 ................................ TCCATTGATTACAACAGTTGAGCCGGTTCCATA 765828 32 100.0 34 ................................ CATGTTGCCATTTACTCCTCCTAAAAATCAAAAG 765762 32 100.0 33 ................................ TCTCTTGCTTATATCCCATCATGTCTGTATAGA 765697 32 100.0 34 ................................ ATTAAACTTTTTATCCCAGACAGCCTCACAAATT 765631 32 100.0 34 ................................ ACTAGTGTTTGTGTAAGTCTCAACTATTAACGTT 765565 32 100.0 35 ................................ AGAACGTCATTAGCTGGCAAAAACACATGGACAAC 765498 32 100.0 34 ................................ TAACATTACTCCTCTTCCGTCTTCTCAACCCGAA 765432 32 100.0 34 ................................ TATGCAGTACGTTGCCAGCGATAAACTGTGACGT 765366 32 100.0 34 ................................ ACCTCTCAGTCTAGCAAGTGTTGATTTAGTTCTC 765300 32 100.0 34 ................................ AAATGATTTGAAGTAACCTTGGAAGTATTCCACA 765234 32 100.0 33 ................................ ACGAAATTGCAACTTTTGACCCATTGACAGGTG 765169 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 51 32 99.9 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCCATTCGCGGCGACTTAGATAGTTACCCACCATTTTTGGTCTAGGAGGCGCTTATGATGGTTTTAGTGACTTATGATGTCAACACTGAGACAGCAGCAGGACGCAAGCGACTGCGCCGTGTAGCCAAGCTATGTGTAGATTACGGGCAGCGCGTGCAAAATTCTGTTTTTGAGTGTTCTGTTACACCTGCAGAATTTGTGGAAGTGAAAGCTAAATTAATTGAAATCATAGATATAGAGTCTGACAGTATTCGATTTTATTTGCTAGGTAAAAATTGGCAAAATCGTGTGGAGACGATTGGTCGTGATGAGAGTTACGACCCGGATATTGGTGTTTTACTTTTATGAAAAATAGGTGTGCGAACCTAGGTTACTCATTGAAAGTTGGTAGGTTCGTTGTGAAAAAAAGCAAAAAACGTGTTATTTTCGATAAATTGACTTTGTAGAAGAACTTTATAGTTTGATAAATAGCACAAAACAGTGTCATGTTGCGCT # Right flank : TTTTAGGCTTAGTTGTTGCACAAAGCCAGTGCGCATTATATGGAATTTATATTATACTATATTCAAAAATAAATTTTTTGGTGTTTAATTATCAGTAAAATCTTGATATCTTCACTCAAAGGATGGATTTTTAAAATTCCCTATAACAATCGTTGATCCTGATTGGCCCCAATATTTGAATCTTCAAGACTGATATCAACTTTTATCCACACTTTTACATATAGAAGTTAGACATTTATCTAATTTTTTAGTTCGTTCTAATTAAGGCTTTTAATTACTAGTTGACAGATTGAACTCTATTTCTAAACTCACTTGTTCTAGTTGTAATATCCTGAAATCTTCCCACATTGGTACCATTCAGGGGTGAATGCAAGTATCCTGTTGATGAAGGTGTAAGGAAAAAGAAAAAGCCAAGACATTGGCTTTTTTGATGGTCATTTGTATGAGTGATCAATGATTTTATTCTTTTTGGCTGAAAATGACTTGCTCTGATTTTTTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //