Array 1 273251-273682 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANCX01000001.1 Streptococcus agalactiae FSL S3-001 ctg120001011949, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 273251 36 100.0 30 .................................... AACATTAGCCTTTTCTAACTCTTCAGCTGT 273317 36 100.0 30 .................................... TATGTCTTCTAACAGTTGCTTCTTGTGCTT 273383 36 100.0 30 .................................... CCGTCAAACAAGAGCGACAGCGAAACAAGC 273449 36 100.0 30 .................................... TTTTATTGGTTTTCTAAGTGCTCGACCATC 273515 36 100.0 30 .................................... AAAAAATAAATGACTTTAAAGCACTTGGAG 273581 36 100.0 30 .................................... AAAAAATAAATGACTTTAAAGCACTTGGAG 273647 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : TTTTATTGGTTTTCTNAGTGCTCGACCATCGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 45251-43961 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANCX01000004.1 Streptococcus agalactiae FSL S3-001 ctg120001011952, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45250 36 100.0 30 .................................... TTTTATTGGTTTTCTAAGTGCTCGACCATC 45184 36 100.0 30 .................................... AGTTACTTCTGCTTGGGTTTGATAAGGGTC 45118 36 100.0 30 .................................... AAAAAATAAATGACTTTAAAGCACTTGGAG 45052 36 100.0 30 .................................... TAGTAGCCATTATTATTATGGCTTTTATTT 44986 36 100.0 30 .................................... GGATGATTTCGATTATGCGGCGGTGGTTGA 44920 36 100.0 30 .................................... AAATGTTAATTTCATATCTACATCTTGTTC 44854 36 100.0 30 .................................... ACATAACGTTCAAAAGTTTCCACTAATAGC 44788 36 100.0 30 .................................... TTTTATTGGTTTTCTAAGTGCTCGACCATC 44722 36 100.0 30 .................................... AGTTACTTCTGCTTGGGTTTGATAAGGGTC 44656 36 100.0 30 .................................... GAAATGTGGAGTCATTCAGGTTGATGATGG 44590 36 100.0 30 .................................... ACATTTGTTAAATTTGAACTTACTGGAAAT 44524 36 100.0 30 .................................... TCCAAAACAAATACGAATGCTTGAGCGATA 44458 36 100.0 30 .................................... GATTACCTTAGATGATGTTCTAATCGGTAA 44392 36 100.0 30 .................................... TTAACAGTTTCAAGTCTGTCTTGTTACTTA 44326 36 100.0 30 .................................... ACTCTAAATGATAGTTATGAGTTAAATGTT 44260 36 100.0 30 .................................... CAAATTACAGTTTCGACTGATTATGGAAAT 44194 36 100.0 30 .................................... ATATGTTCCACTCTATGAATTTAGGCTCAT 44128 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 44062 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 43996 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : | # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //