Array 1 63916-62770 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHLE01000032.1 Salmonella enterica subsp. enterica serovar Kentucky strain CVM N50419 N50419_contig_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 63915 29 100.0 32 ............................. CGCCCCTCACCACCGTGGCCGCGTGCCGTTCG 63854 29 100.0 32 ............................. GCAACTATGTTTAACGCGGCCAATAACGATTT 63793 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 63732 29 100.0 32 ............................. ATTTTCCTCTTGATCCGACTGATAAAACAAAC 63671 29 100.0 32 ............................. CCAGTCTGTATGAGGCTGCGATTGTGTGTTTT 63610 29 100.0 32 ............................. CCTGTAAAACTGATTTCAGGCTGGTTAGTGAC 63549 29 100.0 32 ............................. TAACGCCCGGCGGTATAGTCGATTTCGTGCTG 63488 29 100.0 32 ............................. ATTTATCCATTAGTCCCATAGCTGAGTCTCTT 63427 29 100.0 32 ............................. TCAACGTTACGACCGAACCACACCGATAAGAA 63366 29 100.0 32 ............................. GCACGGGTACGCCGAAAATCGGGGGCTATGCC 63305 29 100.0 32 ............................. GGGATCGGCGAGTCGTTCGTGTTTGCTATTTC 63244 29 100.0 32 ............................. GTCAACGCCAATGACCGGGAATTATCCCGGAA 63183 29 100.0 50 ............................. TTTCCGCTCTCTCTCGTCCATCATTCCGCGCCGGCATAACTGACGATCAG 63104 29 100.0 32 ............................. CTGGTCCCGCGTGTATACCAGTATTTACCGTG 63043 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 62982 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 62921 29 96.6 32 ..........T.................. GCGTATGAGCGCCCAGCAGCGAACGTGAATCT 62860 29 100.0 32 ............................. CCGCTTTGCTGGCAACATTCACCACATAGCAT 62799 29 96.6 0 ............T................ | A [62772] ========== ====== ====== ====== ============================= ================================================== ================== 19 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTAGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5363-6489 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHLE01000143.1 Salmonella enterica subsp. enterica serovar Kentucky strain CVM N50419 N50419_contig_143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5363 29 100.0 32 ............................. CGTGCAGGGGGTTAAATAAAGAACACGCTGAC 5424 29 100.0 32 ............................. CGCTTGGCGGTTATCATGGCCGGTAATGACTC 5485 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 5546 29 100.0 32 ............................. CGGGGATTAGCTCTAAAAATATTTTTATTTTG 5607 29 100.0 32 ............................. CAGTATTTCGGCATGGCAAGCCGCAGCGCGAA 5668 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 5729 29 100.0 32 ............................. TCAGAGCCTTTTTGATGAAGTACTACGGCAAC 5790 29 100.0 32 ............................. GCGTACAGCCGTATGCCTCAGACTCCCCACGA 5851 29 100.0 32 ............................. GGCCGATATACAGTTTTTACTGTGGGATGCGC 5912 29 100.0 32 ............................. CGGAAATTCAGGGAACCCCGGAAGCGATTAGA 5973 29 100.0 32 ............................. CAGCAGGACGACGACCCGCGCCCCCGCGTCGG 6034 29 93.1 32 A...........T................ GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 6095 29 89.7 32 A...C.......T................ CGGACATTGTTCGTGAGCGAGCTGTTGTTCGT 6156 29 93.1 32 A...........T................ ACGGGTTAGCGCCTGCGGATAATGCCCAGCAC 6217 29 89.7 32 A...........T........G....... GTGGCAATGGTATCGCTATACGAAAGCGACGT 6278 29 96.6 32 .......T..................... TTCGTGTATTTTGAGTCGTTTACCGTATCTGC 6339 29 100.0 32 ............................. CGCGCCGCACGTTCGGTAGCGTGGCTGAGTTA 6400 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 6461 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GCAACAGTGCTGGTGGAATTAAAAACACCGACGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //