Array 1 370-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL455128.1 Enterococcus faecalis TX0102 Scfld149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 369 35 91.9 29 --..................................C CTAAAGCACTAACAACTTCCCACAATGCA 305 37 89.2 37 .................................NNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 231 37 89.2 29 NNN.................................A GCAAAAGAAGAAAAGAAAACAAAAGTTGC 165 37 100.0 29 ..................................... GCACCGTCAACGTATGTTGGGAGCTCGAA 99 37 100.0 29 ..................................... TCTGGATCAGGAGGTGGATCTTATCAAGG 33 33 89.2 0 .................................---- | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 93.2 31 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : | # Right flank : A # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.65%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 64344-64955 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL455129.1 Enterococcus faecalis TX0102 Scfld161, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 64344 37 86.5 29 ................................AAACC GAAGCACGATTGATATTAGCGCAACTATC 64410 37 86.5 29 ................................AAACT GGCTTGTTGTTACGTGTATTACAGACGGG 64476 37 100.0 1 ..................................... N Deletion [64514] 64514 37 75.7 29 NNNN............................AAACG TGCAACAAAAGAATATTGTTGTCAATGGT 64580 37 86.5 29 ................................AAACG CACACACACGCTACTCACAGGCATTATAG 64646 37 86.5 29 ................................AAACG TACATGTGACAGCAGTTCTACTTACATTC 64712 37 100.0 1 ..................................... N Deletion [64750] 64750 37 75.7 29 NNNN............................AAACA TCAGTTGTCGGGAAATTGCCGGAGCGTGG 64816 37 100.0 0 ..................................... - Deletion [64853] 64853 37 73.0 29 NNNNN...........................AAACT CATAGCAGACCAACCTGCTCCATCGCTTG 64919 37 86.5 0 ................................AAACC | ========== ====== ====== ====== ===================================== ============================= ================== 11 37 87.0 21 GTTTTAGAGTCATGTTGTTTAGAATGGTACCANNNNN # Left flank : GCACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTACTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAAAAAAATAATTCTCCGAG # Right flank : CAATGTAAATGCTCATTATGATTTACATATGTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACGATTTGATTGATGTAAAAATATCGTTAATATGTATAAATATGGTTATTATATAAAAAATATAAGTAATAAATTGAAGCTTTGCTAAAGCAAGTGATGCGATTACGAAATTATTTAATTTTAGAGTCACGTTATTTATTACTTTACGAATAGAGAATACGATTATCTATAAATCAAGAATTAATCCCCAATTTATTGAAAATGACACTCCCTGTTTTATTAATATTTCATGCTTTTGTTGTACTATTTGATGATACAAAAAAGTAAAACTGAGGCCCCAATTAAAGTCAAGTTAACCACATTGAAAGATAGAACTTTCAATGTGGTTAAAGATGCTTAATGAGATTCATGAAACATAGAAAGCGGATTAATTTCCTATGCTCTTTATTTGTATATTTTCTTGGGAATCATTATTGATTGTGGATTAAAAAGATAAT # Questionable array : NO Score: 4.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.35, 5:0, 6:0.25, 7:-0.89, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCANNNNN # Alternate repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCANNNN # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [8-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //