Array 1 58429-58064 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MLAH01000014.1 Rodentibacter ratti strain Ppn157 contig_14, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
     58428	    32	 100.0	    34	................................	ACAGGGCACATTTCATTGTGAACAAGCCATTGCC 	
     58362	    32	 100.0	    35	................................	ATGATCTTTAGCAGGTCGCCGATTATCTTTACCGG	
     58295	    32	 100.0	    35	................................	AATTTCCGCCATTTTCTTTTTAGTCTTAATTCTTG	
     58228	    32	 100.0	    35	................................	TTTCTAAACGTGGTGGGTATCAAGCGTTTCTGTGG	
     58161	    32	 100.0	    34	................................	TTTAATTCGGTGAGTAATTGAGATGAGGCCTTGT 	
     58095	    32	  87.5	     0	............TC..AA..............	|                                  	
==========	======	======	======	================================	===================================	==================
         6	    32	  97.9	    35	GCAGCCGCCTTCGTGCGGCTGTGTATTGAAAC	                                   	       

# Left flank :   AGGGAGTGAATCACTTATGATGATGTTGATTACCTATGATATCTCTTTTGAGGCAGATGGCGGTGAAGGACGATTACGTAGAATAGCTAAACATTGCTTAGATTATGGTGTTCGCGCACAATATTCTGTGTTTGAATGTGATGTAACTCCCGACCAATGGGTGGTTTTAAAGGAGAAACTTCTCAATACTTATGATCCTAAATACGATAGTTTACGATTTTATCATTTGGGCAGTAAATGGCGCAATAAAGTAGAACATCATGGAGCTAAACAAGCAGTAGACATATTTAAGGATTTGCTGATTTTGTAATTCGCTAACCTGTGGTTATCAAAAAAGGCCAAGCGGTTAGCGATAATAAAAAGTTCTTTAACAATCAGTACTTTATAAAAATGAAGTATAGCAAAAAGAGCTGTGTTATACTTCTCATCACTTCTTGAGTAGAAGCTTGGCGAATTAGGGGCTGCAAAGCCTTATAGCGCAAGGCTTCAAAACCCAGGGA
# Right flank :  ATTAAAGTGATTGAATGCATTAAAGGCTAAATTGAGAATCTATTTTTGAACGGTTATGTATTAACTGAGTACAATTCCATCGTTTAAAACCATAGTTAACGCTAGATTCGCCTATAAATAGTGTCTATAATAACTGTAAATTTAAACAGATGAAATAATGTTATGGATATTTCTGAATTACTTGATGGTTTGAACGATAAACAACGTGAAGCGGTGACCGCACCACTTGGCAATTATTTAGTATTAGCAGGGGCGGGGAGTGGAAAAACCCGAGTATTAACCCATCGTATTGCCTGGTTGGTGGCGGTGGAAAATATTTCCGAAGGTAGCATTATGGCAGTGACTTTTACCAATAAAGCCGCAGCAGAAATGCGCCACCGTATTCAAACTACACTGAGTCAATATTCCAACTCAAATTTATTTGGTATGTGGATTGGTACCTTCCACAGTATTGCTCACCGTTTATTGCGCGCCCACCATTTAGATGTCGGGTTGCCGCA

# Questionable array : NO	 Score: 9.16
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCGCCTTCGTGCGGCTGTGTATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [8,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.40,-3.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [1.01,9.41   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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