Array 1 96317-91307 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQEL01000029.1 Pasteurella multocida strain 2578PM isolate swab isolate 1 contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 96316 28 100.0 32 ............................ TTTCTAAGCTGCCTATACGGCAGTTAACTTTC 96256 28 100.0 32 ............................ AAATGGTAAACCAACAGTAAACACTAAGACAC 96196 28 100.0 33 ............................ CTGTTGAGCTTGTATTCTTTAAAGAATGATTGA 96135 28 100.0 32 ............................ ACTACGTCTTGAACATTATATTCTAGCATTTC 96075 28 100.0 32 ............................ TTTCATGATATCATCGCCTTGTGGATTGAAAG 96015 28 100.0 32 ............................ TTATTGAAAATGCGGTAGTCGCCTTTATAAGT 95955 28 100.0 32 ............................ ACCCTCAGGAGTCACCCCACCTACTGCCATAT 95895 28 100.0 32 ............................ TCAATGGCTGCTTCTGCTGCTGCTTCTACCAA 95835 28 100.0 32 ............................ TAAGTCTTCTTTCTTCATCCTGTTGAGCTTGT 95775 28 100.0 32 ............................ ACCTGAAAAACCTTTTGACATTGACACGAACG 95715 28 100.0 32 ............................ TACACTTCTCACCGATCAAGCCCACTGAGAAA 95655 28 100.0 32 ............................ GGAACACTTCGATAAGAACACACATGAGCTTG 95595 28 100.0 32 ............................ AAATTATTGCCAAGTATGCAATCGGTCATGGG 95535 28 100.0 32 ............................ CTTGTCTGTGAACTCAGTTGGTGTCCATCCAG 95475 28 100.0 32 ............................ TTTATGGAGCAGGGGACGCTAAGATTGGTGAG 95415 28 100.0 32 ............................ ACTAGATGCTGGGAAGACGTGTTTAGTTTGGT 95355 28 100.0 32 ............................ ATATAAAGCCCGTCCGTAGGCTTCCTTACCGA 95295 28 100.0 32 ............................ TATAAGGCTCCTGTGGGAAGTCCTTGATGTCT 95235 28 100.0 32 ............................ TAAGAAATTACTAAATGTAGCGTAAAATGTGC 95175 28 100.0 32 ............................ ACTCATTTAGTCGACCGACAGGTCGCTTTGGA 95115 28 100.0 32 ............................ AATAAGACAGCCCTTTTGTGTTCTCCCTAACT 95055 28 100.0 32 ............................ ACTGATTTATTAAAGAACAAGTAAGTTAATTG 94995 28 100.0 32 ............................ TTATGGTTAACTTATTCTTACAGGCGCACTAC 94935 28 100.0 32 ............................ AACGTGACTGATTCGAGTTCCAAAGCTACCTG 94875 28 100.0 32 ............................ TCAAAAAATCATCTAAATAAATATCAGACAGA 94815 28 100.0 32 ............................ TATACCCCACAAGGTATTAATGTGCTAAACTT 94755 28 100.0 32 ............................ TCGAGGACATCTACCCCTTTATCATGTATTAA 94695 28 100.0 32 ............................ GCAATGCAAGACAGTAAAGCGTATGGAGCTAT 94635 28 100.0 32 ............................ CGCTGAAAAACATTATATAGAGGTAACAAGTG 94575 28 100.0 32 ............................ TTATGGTTAACTTATTCTTACAGGCGCACTAC 94515 28 100.0 32 ............................ TTTTAGACACGCAATTAGTCGACCAGCAGGTA 94455 28 100.0 32 ............................ GACGATAATATCAAAGAACTCCTTTATGTCAT 94395 28 100.0 32 ............................ GTTATCAGCGTCCACTAGGTCATTTAGTGTCT 94335 28 100.0 32 ............................ TTTTATCCAGACCGTACAACGTTTGAACCGCA 94275 28 100.0 32 ............................ AATCAGTGCAACCTGTGCTGTCTGTAAATTGT 94215 28 100.0 32 ............................ TATTGACAACTGTAATTATCTTCTATATTATA 94155 28 100.0 32 ............................ TACGGCTTCTTCTTCACTTACATATTGTAAGA 94095 28 100.0 32 ............................ TAAAGGCACACTATCCCCTACCTCTTCTTCAC 94035 28 100.0 32 ............................ TTTAGTTACTCATCTAGTCATCCATTACTCAT 93975 28 100.0 32 ............................ ACCTTTAAACAGAAACGCTTTCGTTCCACTAG 93915 28 100.0 32 ............................ AAAAGGTTACACACCTAAGGAGGTATTAGAAG 93855 28 100.0 32 ............................ TTTAGTCAACTCATCGTCATCCTTTAGTCAAC 93795 28 100.0 32 ............................ CCACTAAGACTACTTTGAGCACGTCACCTTGA 93735 28 100.0 32 ............................ TCCTCGCGCTTGGACGAGAATCGACAAGGGTG 93675 28 100.0 32 ............................ TACTAAAAGACTCCTCTTTGTTATCGAAGTGG 93615 28 100.0 32 ............................ TCTGTCGGCTCTAACCACATGACCAAATTAAT 93555 28 100.0 33 ............................ CAAGTGAGTGGGCAGGGTATTGTAAAGGTAACA 93494 28 100.0 32 ............................ ACAAACTCCCTAAAGCTTTGCCGTACATTAAA 93434 28 100.0 32 ............................ AAAATTCACATACAAGGTACTATACCGTCGGA 93374 28 100.0 32 ............................ GTAGATGTGCCATTCAACAAGACTCAAGTACG 93314 28 100.0 32 ............................ ACTATAATGCTACCTCACTGGGTTGGCGCTGT 93254 28 100.0 32 ............................ ATGTTTGTTCCCCTAGTTGGTTGATTGGTTGT 93194 28 100.0 32 ............................ ACTTCCGCTTGAAAGTGCTGGTTTGAAACTTT 93134 28 100.0 32 ............................ ATGGGGACAATCAACGACCAGTTAAAAGCAGG 93074 28 100.0 32 ............................ GAATTTCCCGCCATCAACGCGCACTTTTCCGC 93014 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 92954 28 100.0 32 ............................ AGTGCGGCGTGCCGTCGTGGTGTGGCTCTGTT 92894 28 100.0 32 ............................ GATCGCAAATAAAATCGCCGATCTTGGCACTA 92834 28 100.0 32 ............................ GCGTCGGCGGGAAGTTATCGATCAATCCCTGA 92774 28 100.0 32 ............................ TGCTGTTCACTGGCACAATAGTAATGGTTCAT 92714 28 100.0 32 ............................ TAAATAAACCACTAAAACTAAGAATTTTTTGA 92654 28 100.0 32 ............................ GTTTGGGAGTGGAATTGTTTGATGAAAACAAA 92594 28 100.0 32 ............................ GTTTCTGACACTTCAACTGTTAGACTGAACGT 92534 28 100.0 32 ............................ TTCTGCGATTTTAGTCGGTGGGTATCATCGTG 92474 28 100.0 32 ............................ AAGCCCTTGTTACACCAACCACCTCTGTTGCC 92414 28 100.0 32 ............................ CAGCTCGCAATGATTCTGTTTGAAAAGGCGTT 92354 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 92294 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 92234 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 92174 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 92113 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 92053 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 91993 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 91933 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 91873 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 91813 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 91753 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 91693 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91633 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91573 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91513 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91453 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91393 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91333 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 84 28 99.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 170487-170339 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQEL01000002.1 Pasteurella multocida strain 2578PM isolate swab isolate 1 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 170486 28 100.0 32 ............................ TCAAAATTAATCTACCAACTGAACTGGAATAT 170426 28 100.0 32 ............................ GATGTATTCCTCGCAATAAGAACGACCATAAG 170366 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //