Array 1 579568-580249 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWH010000001.1 Nodularia sp. LEGE 06071 N071000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 579568 37 100.0 32 ..................................... TTTGCGGATCAAGCCCGCGCGATCGCTATTTG 579637 37 100.0 36 ..................................... ACTGGCGTGGATAGCCACTACTTTTAAGGGAATATC 579710 37 100.0 35 ..................................... CGCGCACGTTTTAAAAGCTGCGCTCTTCCAGATGA 579782 37 100.0 34 ..................................... CTGAAGGAGGATGTGCAATAGCGCATTCCTGGCA 579853 37 100.0 37 ..................................... ATCCCTCGCGACCCTTACCAGTTCCCAGCTATTCAAG 579927 37 100.0 33 ..................................... AATTTGATAATGAAGGATGGTAAGAAATCTAGC 579997 37 100.0 34 ..................................... ACGCTCTCACCTGCGCCTCTGTTAGTTCTTTCCT 580068 37 100.0 35 ..................................... TACCATCACCTAATTTATCAGCTAGAAAATCAGTA 580140 37 100.0 36 ..................................... CTGGAAGGGTATGTTTTGAGAGGGGTTTTACTACTA 580213 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 100.0 35 GTTCCAATTACTAATAATCCCTATCAGGGATTGAAAC # Left flank : TCAGAAGACAAGCGCCGCACCAAAATTCATAAAATTCTCAAATCTTACGGACAGTGGATGCAATATTCTGTGTTTGAGTGCGACTTGACCAAGACTCAGTATGCTAAACTGCGATCGCGCTTGTCTAAAATCATCAAACCCAACGAAGACAACATCCGCTTTTATTTCCTCTGTGCTTGCTGTCAGGGAAAAGTTGAGCGTATCGGCGGTGATATGCCAAGAGACACCACAGTATTTTTTGCCTGAATTTTGCGTCAACCAGTAGGTGTTTTTTTGAACATTGAAAATTTTACGCCTGAAATCCTTACTTCATCTGGCTTTGAACCCTCTCACACCTAAATTGAGGTTGACGCAAACCCCCAAAGCCTTGCTATTAAAGCTTTTGAGCTATTTTTAAAATTTCTATCTTGACAACCCAATCGCTGAAAAGCTATATTCACTTTAGGTTGACGAAACAGCACCTTGAAAACCAAATATATCAACGCTTTCAGATGCGGGCG # Right flank : CGCCTCTGTTATTTTCTATGAAAGTGCAACAGTTTTAGAGGATGTTTGTGCAGAAAAACAAGAATATTGCTCCCTCTCCTTACTAACTACCGTGTACACACAAGTGATCGAATCGCCCCCTAACCCCCAATTCTGGGGGAACAAGAATTTTCAAAGTCCCCCAAACTTGGGGGATTTAGGGGGCTAAACAGGCTCAAACGCAGACAGGCAAGATTTGTGTGTACACCGTAGCTCCTTAGTAAGGAGAGGGTTGGGGTGAGGTTAAAAATCACTGCTCAATAATTGGGACGATAGGCTGCTCACCAATTGGGAGAATAGGCTGAATTTCTACAGGCTCAGGATTGAGAAAAGACTGCCAACTCTGAATTTGCTGTTGCGCCCTACTGTAAACAGAACTACTGCGTGGAATCAACTTAGCAGTCTCAATAGCTCGCAGAATATTAACATCACCCTGAGAACGGGCAATATCGAATAACTGCTGACTCCATTGGTTAATAGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTACTAATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 124466-122976 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWH010000014.1 Nodularia sp. LEGE 06071 N071000014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 124465 36 97.2 38 ......G............................. TTGGCGTACGCCCACTGCCCAACCGTCGCAGTTTGCAA 124391 36 100.0 39 .................................... CGAAATCGCTAACAAAGCGGTTGCAACTGGTGGAAACGC 124316 36 97.2 37 .........................T.......... GTTCGCCTGAAAGAGTTGAAGAGCTATTCTTCTTAGT 124243 36 97.2 33 .........................T.......... TGAACCCCACCCCAGCCTGAAAGGAAACAATGT 124174 36 97.2 39 .........................T.......... AAGAAACGCCAGTTCTTTGAATGGCAAGACTCGCCTACA 124099 36 97.2 36 .........................T.......... CATCGTAAAAGGAAATGTTGGTGTTTTGGTAGAAAC 124027 36 97.2 37 .........................T.......... TTTGACCTGGGTAAAAGATATATAACTTGCAGTTGTA 123954 36 97.2 38 .........................T.......... AGTTTCGTAACATTGAATTTGGAATGAAGTTCGATAGT 123880 36 97.2 35 .........................T.......... GTTTCCATTTCCCAAACAAACTAGCACCGAAGGTG 123809 36 97.2 33 .........................T.......... TCATCCGGTGGAACCTGGGAAATTCACACTTTC 123740 36 97.2 37 .........................T.......... TCGATACGGTGGAGCTGGTTAAGTCATTGCCTCCAAA 123667 36 100.0 38 .................................... ACAAAAGGTAATTATCCATGGGTAGACAAAACCGAAAC 123593 36 100.0 36 .................................... CATCTGATTAATTTATTAAATCCAGTGAGTAACAAC 123521 36 100.0 39 .................................... ATGTCAGTATTTAGAGATGACAATCAGCGTAAAAGAATG 123446 36 100.0 38 .................................... ACAATCACTGGTTGAAGACAATTCAGGAGGTCGAGAAA 123372 36 100.0 36 .................................... TGGAGGAAGAGAAGTCGTTCCTCAAGGAGCTTTAAA 123300 36 100.0 32 .................................... AAAGAAGGTGTACCTATGAGTCTTAACAGAAA 123232 36 100.0 37 .................................... TAACATGACTATATATACTTACAAGTGTAGTGATTGT 123159 36 100.0 36 .................................... AATTACTCCAAATATGGAAACCCAAGGTAATCAACT 123087 36 100.0 40 .................................... ATTATGTAAATCCTTCAGGTATGGCGCCAGAAGTGTTAGC 123011 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 21 36 98.7 37 GTTTCCATCCCCGTTAGGGGAAGAGGTTATGGAAAG # Left flank : TATCCAAACTAGAGAAATCCCAGCTTGAAGATAATCAGTAGCTTTTTCGATCATGTCTCCAAAAGTTTGACCAGGAGAAATAATTTCGATAACTAATTCTGGTATAACAGGACAAGCTTCATCTTTAAGCCAGTCAGCAGGAAGACGGTTATAAGAAATGTATGTTAAATCAGGGACAGGTATCCAATTTTCTTGATTTCTTGTTAATTTTATCCCCCATTCCACGACAACGCGACCTTTTTCTTGCGCCCATGTGGATAATAGGATAAATAATGCTCCTGTGGTTGCGCCATGAAAAAATTTAGGAGACATTTGCTCATTTTTATATTTCGGTACAGCTTCACCGTCAACAAACTCATAAGCAAGTTCACTTTCGGGAAGTGCAAGAAATTCGTCGAGAGTGAGTTTGGTTTTTAGTTGAGTCATGGTTAGTTTTGGTGGGTTCAATATTCCCGACTTCTATGATAACTAAAGTTCGGTTTATACCCGGATTTCTCACA # Right flank : AGTTCACTTCTGGAAGCCTTGCTAGGAGAGGGTTTGAGATACCCGAATCGACACCAGTTTTTGCAGTGTCAATAACTCCCAAAAAATTCTCAATAACTCGTGAACTTTACAGGCTGGAAAGCTTACTGTGCAAGCAATCGACACCAGTTAACGAAATTATGCGGTTTTCAAGGTTCGGGGGAGTGGTGTCGATGAGTTTTAACTCACCTGATAAAATGTAAAATATATTACCTGAAATTGTCAAGTTGTCTTCTGCAACTATTTAGGCGATAAGGACTAGATTACAGTCTGAACCTAGTACCGCAAGGCGGAAGTTAAAAGTCAAAAGTCAAAAGTCAAAAAGCTTATAAAATGGGCTTTTCATGGATTTTGAATGGTCTGTTTATTTACGCCAACTTGTACTAGATAATTGACGTGAGGTACAAGCAGTAATAATTAAACGCAGATGGACGCAGATAAACGCAGATAATTTTTTACTTTACTAGACTAGGAAATGCTAT # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTTAGGGGAAGAGGTTATGGAAAG # Alternate repeat : GTTTCCATCCCCGTTAGGGGAAGAGTTTATGGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 292933-292752 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWH010000003.1 Nodularia sp. LEGE 06071 N071000003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 292932 37 91.9 35 ...G......C..........G............... TGGTATGTACCTATCATACATATAATAGAAATAGA 292860 37 100.0 35 ..................................... AACTGTACCCAGTGGACACGAGTTTGGAACCGTGG 292788 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 97.3 36 GTTTAAAAACAACTTAATCCCTATCAGGGATTGAAAC # Left flank : GTTAATTGTTTCATGGGGAATGCTAAACAGATTAAAAAGCGTATTAGTAGAAAAATTAGGCGTAGACCAAGAAATTGCCGATTTACAAATTGATGCCATAAAAAAATATAGTGAGCTGGGTCCAGGAAGTAGAAGCCCACAAATTACTTTAGGAGGAACAGGACTAATCAATCTACCTGATGAAGAAGATGCTCATGTAATAGAAACAGCATTAGCTGGAAAAGCAACAGCATTAGTTACACTTAATTTCAAACATTTTACATCAAAAAATATAGAAATTATTATACCTAACAAGCACCATATATGTTCAACAGCAAATTATAAAACTCATATAGTAGACCCATTCACAATGATGGATTGGATTAGAAATAATAGTATTCCTTCACATGAAATAAATACTGAAATAAATTTAAAAATAGAAGATTGGACTTATCCCGCAGGGAACGGACTTGCCCTTACGGAACAAGATTAATCACTAATTTGCACTCGAATCTAAACAA # Right flank : GGCGAAGCACCCCAACACAGACAAGCCACACGTCAGGGTTTGAGATGCGCTAACCCTGACAGCTATCCCTACAGCATCACTGCTTTTCTTGCTAAATAACCCCTTTTTTACTGGTTCGTGCCAAAGTGGATAAGTGCTGCACGGATTGCCATAAACCAGACTGCGAGGGTGGCAAATAGGTAGAGGTAAAACCGAAGCATGATGAAATTGAATGTGCAGTGGACAATGCTATGTAATACGCGAAATCCCACAAAAATCCAGGCGGCGGTTACATACACGGCATCTACCTGCTTGGTGGCAAAAAGGTATAGTGCGATCGCATAAAAGAGTACTGGAATCTCAAATAAGTTCTTGAAGTTATCCGATGGATTAGATACACTTGATGGCGAAATCTGAGCCAATGCGCCGGATACTGCCAGATCCTGTGAGGGGATCTTTGTCTTGCTAATAAAGCTGATACGACGGATGTACAGATACACCCAAACTAAAAGTGTTAAAAA # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAAACAACTTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 1 13898-14512 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWH010000023.1 Nodularia sp. LEGE 06071 N071000023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ===================================================== ================== 13898 23 100.0 50 ....................... CTTGGTCGCGTGTCGCTTTGTTTCAGGCAATGGAAACTTTCCGCTAAACT 13971 23 100.0 52 ....................... TGTAGAAAAATATGGGCGAGAAGCCAAAATACTCAGAACTTTCCGCTAAACT 14046 23 100.0 51 ....................... ATCAAGGCAACCGGACCAGTGTGGCGATCGCTCACCACTTTCCGCTAAACT 14120 23 100.0 52 ....................... GTTCTAGTACAAATTTATCGGTGAAAATCCATTCTAGACTTTCCGCTAAACT 14195 23 100.0 50 ....................... ATCTGTAAGCATTAAGTGAATAAATGAAATTTCTGCCTTTCCGCTAAACT 14268 23 100.0 48 ....................... ACTTTAAGCTGACCGTTCCATAAGACGTGTTCAGCTTTCCGCTAAACT 14339 23 100.0 52 ....................... ATAAACTTCTTCAAATCTTTGCTACAAAATCCATAAGTCTTTCCGCTAAACT 14414 23 100.0 53 ....................... AAATCAGGTAAGGTCACTTTTAGAGAAGATTTTTTAAACCTTTCCGCTAAACT 14490 23 95.7 0 ..................A.... | ========== ====== ====== ====== ======================= ===================================================== ================== 9 23 99.5 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : TTTGGTGAAAAACTGGATATCTATACCATAGCTCACTTGCAATTTGCGAGCGATCGCGTCAGCGCTGCTGCAAAGCAGATCGCACTGAGAAAATAGCGGCAACTTGGGCTACAATTTTAGGACGGCGGGAAATGGGAGAATCTCTCAAGGCGATCGCCAATGATTTAGAAATGCCTGTTGCTACAGTTAGAATTTACACAAAATTGGCTAGGCGATCGCTAAACCATTCAAATGCAAAGTAATATATCTCGACAAGAGCAAACAATCATCTTATGATGATGTCATCAGCTTAAATTTTGGCAGACCTATAGTGAGGTCAAAAACCCTGGGGGGTTTGCCAAATCGCCAGAACCTTGAAAAATCAATAGTTACAGAGTTTCATAAGTTTCAGTTGCGAATTTCGCGAAGCCTGAAATAGGGTTTCTAGATCAGCTTTGCCAAAATCGCCTCCAGAATCCACTGGTAGACTATGTTTCAGATGGCGGACTTTCCGCTAAACT # Right flank : CATTTCTGGCAGGTAGTAGAAAATCAATCAAGCCGAATTATAAAGTTTTTAGGAATAGTTTGCAATAAGCAAGAATATAAACAAAGCGACGGGTTAAAAACCATATCGCCTTGCTCTCATCACTCCAAAATCCCAATCACCGCAGCCAGAACAGCCGCAGCGTGATTACCTGTTGGGAAGAATATCCGCTTGCGCCACTGGATGATCTCAGTGAAACTTTTAAGCACTTTACCATCCCCAAGTGCCAGGACTACCCTTAAACGGCCCAACAATATCATTGGTAACCCAACCACCGTAAAAGTTACCTGGTTGCGGTTGTACTTTTTCGCCATCGACGTAGCAACCATCCATAAGATGGGCATAAAATGCTACATAATCTTTAATAGTTGCAAAAGCTGGTGTAGGGTCGGGATAGAACCAAGCCGCATTCTGTGCTTCTTTATCACCAACGCGGATGGTGTAGTAACCAGCAGAGCCTTTCCATTCACAAAAGCTGGATT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.34, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 253143-252962 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWH010000005.1 Nodularia sp. LEGE 06071 N071000005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================== ================== 253142 38 97.4 34 T..................................... CAAATAAGCCCAGAGCGCTGGGCAATTGCACTAT 253070 38 100.0 33 ...................................... AATTCATCTTTAGCAGCAATGATTAATCAAGTG 252999 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ================================== ================== 3 38 99.1 34 CGTTGAAATTACCAATAATCCCTATCAGGGATTGAAAC # Left flank : TTGAGGTTCGCGCATTGTGCCATAGGTATGGAAAACATCACCCCAGCAATGGAAGTTGGTTTTCTAAGTCTCCCATCACAAAACCTATACCAAAAATGCGCCTATATTTTCTCAGTTTATCTTTGTCTGAGTTTAATGAATTATTGGTTAGAATCCTAGCGATGGGCAAAGCCCCGCTTTTCCTGCGGCGATGGCGCGGAGTGTCCGCTAAAAGCGATCGCCATTTTTCAGACATCCTTAAAATGAGTTTTGCGTCAACCAGTAGGTGTTTTTCAAAGAGGTGGAAATTTTAGCCTTCAAAAGCTTACCTATTATGGGTTTGAAGCCTCTCAACTAAAATTGAGGTTGACGCTAACAGCCCAAAGCCTTACCAGGAGAAGATTTTAGTTAATTTCTCAGATATCACCCTTGACAATGCAAGTCCTGAAAAGCTAGTTTAAGTAGAGGTTGACGAAACTGTACCTTGAAAACCAAATATATCAACGCTTTCAAGTCCGGGC # Right flank : GGAAGCAACTTTATTTAATGTCGGATATTGCTGCTACGAATAATCCAATAACTAATGGATAGGGCTAAAACTGCAACTCCTAACCCAATGATATCAATACCTGTTATTTTGGTTAAATCAAGGATAATAATTTTACGCGCAACTGCAATTAAGGAAGTAACAATAACTAACTCAACTTGAACAACGTGTTTCCGGAGATAAGCTGTGATATTTTCTAAAATTTCTAAAGCAATTAAAATGTTTAAAAATAATCCAAAAATTGTAAATAATATTTTATTAAATTGACCATAAGAACTAGTAAAGAGTTCATTAATTAGGTAAATTAGTAAATCAAAAACTGCGACGATGATTACCAATACCATTGCTAGTGACAATACTTTCGAGACAAGCACCTCAAAGTTTTCTATCAGGTGCATAAAGTTGTCGTCCCTAGCAAGATTCCCAATTTTTCTGAATAGATGCCTCATTTGCCATAATTTAAGAGATTAAAAATAATTTTA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTGAAATTACCAATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 1 46952-45986 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWH010000004.1 Nodularia sp. LEGE 06071 N071000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 46951 37 100.0 35 ..................................... GATGCACCAGAGGGGTGGATTTTTCGGAAACCAAT 46879 37 100.0 32 ..................................... ATCGATTCTTACCACCAAGCAAGAAACTCAAC 46810 37 100.0 36 ..................................... CAAGCCCTGATTTGATAGCTAGCAAAATCCCCATAG 46737 37 100.0 32 ..................................... AATTTTCAATCTAGTGGCGGTAACAACCCCAC 46668 37 100.0 34 ..................................... ACTCTACTGGGTTCCGGTACTGGGAGGTAGTAAA 46597 37 100.0 32 ..................................... TTTTTTGAGTACGGCGGCGAACCATCGCAATC 46528 37 100.0 32 ..................................... GTAAGTTGTCAACCATTGCACTAAAACTATTC 46459 37 100.0 35 ..................................... ACGATGAAGAAAATCTATGGTGGCAGTGGCAAACT 46387 37 100.0 36 ..................................... TCTGGCATCTAAAATCAGCTAAAAATAGCTATGTAG 46314 37 100.0 32 ..................................... AGAAGATAGGTGAGATGAGATGTGTGACTTGA 46245 37 100.0 38 ..................................... CGGCAAAGATGAGCAATCCACGGGAGAATTTGAGGTGA 46170 37 100.0 37 ..................................... AGCCGCCAAAGCTACAGAATCACCATCGACTTGCGTT 46096 37 100.0 37 ..................................... CCAGTGGTGAACCTGTAGATTGTAGGCGCGGGGTTTA 46022 37 97.3 0 ...........C......................... | ========== ====== ====== ====== ===================================== ====================================== ================== 14 37 99.8 35 GTTGAAATCACACATAATCCCTATTAGGGATTGAAAC # Left flank : TTAGTTAGGTGTCAGGTAACAAGAGTCTACTTTGCCCAAATGAGCGATCGCACAATTCAAGCTTATGTGAATACAGGCGAACCCCTCAAGTGTGCTGGTGCTTTCGCCCTTGAGGGTTTTGGTAGTTTATTTGTGGAAAAAATCGAAGGTTGTCACAGCAACGTCATTGGACTGAGTTTACCCCTGCTGCGGCAGATGCTAGAAGATTTGGAATACGATGTTACAGATTTCTGGCAATAGTTAATTTTGCGTCAACCAGTAGGTGTTTTTTAAACAAGGTGAATTTTAACGTCGCAAATGCTTACGCTGTAAGGTTTTGAACCCTATAACTCTAATATTGAGGTTGACGCAAACCCACGAAACTATTGCCATAGTTGCTTTTGAGGAGATTTGCTTAAGTGTTAGTATTGACACCCTCATGCCTGAAAGGTTATTCTTGTTTTAGATTGACGCAACCGCACCTTGAAAACCCCATAATTACAAGCTTTCAGCCCTGGGCA # Right flank : ACGGAGATCAAAATTCTGCGGTCTTCTTTGCGCCTTTGCGCCTTTGCGTGAGAAAAAAATATATTCTTATATTACCAGCCAAAACAGAAGTGACACAGGAGAAGGTAGACTGACAACTAGATAGAATTTGCAAGAAAAAGATGTCATTTACTCCTACCACCTCGCTGCGAGAACAACAACATCCCTTAATTCATCAACTAGCTGATTGTATAGAAGCAGTTTGGCATGAACACTTAGAACTATCTCCTTACCATTTACCTGCTGAACTGGGGTATGTAGAAGGTAGACTGGAAGGCGAAAAACTGATCATAGAAAATCGCTGCTATCAAACACCCCAATTCCGCAAACTGCACTTAGAACTAGCAAAAGTGGGGAATATGCTAGATATTTTGCATTGTGTGATGTTTCCCCGTCCAGAATATGACTTACCCATGTTTGGTTGTGACTTAGTTGGGGGTAGAGGTCAAATTAGTGCGGCGATCGCAGACCTATCACCTGTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCACACATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 176416-177885 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWH010000004.1 Nodularia sp. LEGE 06071 N071000004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 176416 37 100.0 37 ..................................... TTATGATTCTCAAACTTAGAGAAATCATAAACCGTAA 176490 37 100.0 35 ..................................... GCTATGGACTGAGAGGCTATGCCCCATCTGCTGTG 176562 37 100.0 35 ..................................... TTGCAGGGGAAAACCGGATTTCGGCAGGTGTGTCC 176634 37 100.0 34 ..................................... ATACATTTCAAAAATGCCTAACGAAATACATCTC 176705 37 100.0 36 ..................................... TTCGTCCCTTGAAGAACTTTTGCTAGCTCGGTGTTG 176778 37 100.0 36 ..................................... CCAGTAATGGCATCCTAAGAATAAAAATATCTCCTT 176851 37 100.0 36 ..................................... TCACTGCTTTAAACTTCTCACCAGCATTTTCGACTT 176924 37 100.0 35 ..................................... ATTGCCGAGGCTATTAATTTCACCAAACCAACGAA 176996 37 100.0 35 ..................................... TAACAAATATGTATCACAGGATTGTTTAACAAAAC 177068 37 100.0 35 ..................................... CCATACTGAATATCTCCTTTGGTGTTCTTAGAATG 177140 37 100.0 35 ..................................... GTGGCATCTACAGCAGACACATGGATAGCAGAACA 177212 37 100.0 32 ..................................... AAATATCTGCAAAGCAAGAATTTTCAGTACCA 177281 37 100.0 36 ..................................... TTCCCAGTCTTCCGGGTCGGCTGCAAGGATTTCTGC 177354 37 94.6 33 ..............G...........A.......... GGCACTTCCGGCGCTTTTGGAATCAATCCTTCA 177424 37 97.3 33 ..............G...................... TTGCTTCTCCCCGCTCTTATGCCAACTCTGTAC 177494 37 97.3 38 ..............G...................... CCCCACTGTATTGATTTATTCATTATTTGCCTTATTTG 177569 37 97.3 32 ..............G...................... TGGATGATATTTATCTAGAGTTAGCACCAGCA 177638 37 97.3 33 ..............G...................... ATTGTCCCCAAACGCCGACTTAGATCCAAAATC 177708 37 97.3 33 ..........A.......................... GCTGCTTGCGACGCTGAAAAGATTTATCAATCT 177778 37 97.3 34 ...............................A..... ACAACCGTTACACCAGAATCACTTAAACCCAATA 177849 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 21 37 99.0 35 ATTGCAATTACAAATAATCCCTATCAGGGATTGAAAC # Left flank : GGGCATCATGAATATGTACCCAGCGAAGGTTTCGGTAATATTCCATCTGGGGTTCATTCGCCGTCTCCGATTTTGCAGCACCATTGAACCTTCCTGTAGTTTATTCTCAAACTGGTGATGGCGATCGCGCAAGCGCTGACAAGTCAGTTCGCTCGTAGATAGTTTTCGATGGTAGCTTGAGTCAGAAGCCCAGAAATATATCTAAGTGCTGTTTTTGCTATGGTTGGAAGTAGGTATTTTTGGTTCATTCAGCGTCAACCAGTAGGTGTTTTTTTGAACATTGAAAATTTTCCGCCTGAAATCCTTATCTCATCTGGTTTTGAACCCTCTCACACCTAAATTGAGGTTGACGCAAACTCCCAAACCTTTGCTATTAAAGCTTTTGAGCTATTTTTAAAGTTTCTATCTTGACAACCCAATCGCTGAAAAGCTATATTCACTTTAGGTTGACGAAACAGCACCTTGAAAACCAAATATATCAATGCTTCCAGATGCAGGCC # Right flank : CTTATTACTTCTCGCACAGCGTTTAAAGTAAAAACAGCAATGCAGCTAACACAGAGAAAAGAATGACAGTAACTATACCCATTCAAGCCATAGAATTAGCTCCCGGTAGCCACATCGCCATTCATAACCTCTCCTGGGACGACTTTGAGGGACTTCTCTCGGACTTAGGTGAAAAACGTCACACCCGCATTGCTTACTACCGAGGAACTTTAGAAATAATTTCCCCCCTAGCATTACATGAGCGTCCCCACCGGATTATTGCTTACATCATCACCACAATCTTAGAAATTCAAGGACGCAACTGGGAGGACTTCGGCTCTACAACCTTTAAACGTCCAGATATTGCGGGAATTGAACCAGATACCTGCTTTTATATCCAAAATGCTCACCAAGTCAAAGGATGTACCCAAATGGACTTAAGTATCTATCCTCCCCCTGACTTGTCCATTGAATCTGATGTCACCTCAAAAACCACCCTTGATGCTTACACAGCCCTGGGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTACAAATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //