Array 1 683698-684917 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAENCF010000001.1 Staphylococcus pseudintermedius strain HSP094 contig_1_segment0, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    683698	    36	 100.0	    30	....................................	AGAATACGCCGTCGTCTTACCGCTTGCAGT 	
    683764	    36	 100.0	    29	....................................	ATATCTTAAAAGAACCGTCCAATACTGAT  	
    683829	    36	 100.0	    29	....................................	GATTATTATCCAACAATGTTTTATAAGCG  	
    683894	    36	 100.0	    31	....................................	ACAAAGGTCCTTGGACTGGTCACCCACAAGC	
    683961	    36	 100.0	    30	....................................	TACAGATAATGAAGCGTCTGACGAATAGTT 	
    684027	    36	 100.0	    30	....................................	AATCGATAAAAGGAGTGTCAGATATAGTTA 	
    684093	    36	 100.0	    30	....................................	TGAGTAGATATAAAAACTACTGGAGCATTG 	
    684159	    36	 100.0	    30	....................................	GTTTGTTTGAGTATTATTCCCCCAATTTTC 	
    684225	    36	 100.0	    29	....................................	CTTTCTAAAAAACGTTGATACGCTTCTTT  	
    684290	    36	 100.0	    29	....................................	AGCAAAACGGTTCAAACGTTGGGTAACGT  	
    684355	    36	 100.0	    29	....................................	AATAAAAAAGGGGAATAAAGCAGTTATAT  	
    684420	    36	  97.2	    30	.............................A......	TGCCTTGATGATTGCTGAGCCTGGTGCTGC 	
    684486	    36	  97.2	    31	............................A.......	AAAATATTTAGCGGAATCTTTACAGGTCAAT	
    684553	    36	  97.2	    29	............................A.......	TTTAACGCCGCTCCTATGACGAGCGTGAA  	
    684618	    36	  97.2	    29	............................A.......	GGAATATGATTTAGAGAAAGGGAATGGCA  	
    684683	    36	  97.2	    29	............................A.......	CTCGTACAACTCTTTATTATTGTTCTGCT  	
    684748	    36	  97.2	    30	............................A.......	ATCTTTTTAAACGAGATATTAAACAGCAGG 	
    684814	    36	  97.2	    30	............................A.......	ATCGTATTGACAACTGTCTTAGCATTCAGT 	
    684880	    36	  88.9	     0	..........................C.C..C..C.	|                              	A,T [684903,684909]
==========	======	======	======	====================================	===============================	==================
        19	    36	  98.4	    30	GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	                               	       

# Left flank :   TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG
# Right flank :  CTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGCGTGGTTGAAGCGGTCGGCGATGCGGTTACAGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGC

# Questionable array : NO	 Score: 6.18
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC
# Alternate repeat :   GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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