Array 1 61711-61251 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB290952.1 Selenomonas sp. oral taxon 138 str. F0429 Scfld560, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================================================== ================== 61710 31 96.8 35 ........A...................... GATGGTAGATTGAGGAGCGTCGGACTGGAATACGT 61644 31 100.0 78 ............................... CAAAACATACGCATATAAGCAAAGCGGCGCGTGGATTGAAACTCTGCTTTCGCGCGGCAATACGACCTCTCCGAGAGT 61535 31 93.5 22 ........A.....................N NNNNNNNNNNNNNNNNNNNAGT Deletion [61483] 61482 31 96.8 35 ........A...................... ACTGTGCCGTCATCGACTGTGTACGTCTCCGTGGT 61416 31 100.0 36 ............................... CCCGATGCACGTGACGTTGTCCCGTTCATGGAGGGT 61349 31 100.0 37 ............................... GAACCTTTGAGCATCTGCACAATCGACTTCTCAAGGT 61281 31 93.5 0 ........A....................G. | ========== ====== ====== ====== =============================== ============================================================================== ================== 7 31 97.2 41 CGCGCCCCGCACGGGGCGCGTGGATTGAAAC # Left flank : CCCGCACGGGGCGCGTGGATTGAAACCCATGCGTACGATGAAATACGCCGACGTGACCGGTCGCGCCCCGCACGGGGCGCGTGGATTGAAACGAACTATACGGACGCGATTATGTGCCGTGCGGCGGGTCGCGCCCCGCACGGGGCGCGTGGATTGAAACCTCGGCATACCGGGGACAAGCGAGAAGAGCTACACCGTCGCGCCCCACACGGGGCGCGTGGATTGAAACCTTGACGACGTATCCGACGAGAATCATGCGATAGTCGCGCCCCACACGGGGCGCGTGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT # Right flank : AGCCGAAAGGAGAAACGACAGGCTAACCGCGAGCTGCGCCTCTCGCGCAATATATGCGCGCGTGCTGTTCTACATGAGAATCATTGTGTCGATTTGGAGGAGAAAATGGGGGCTGTTTTGGGGGTTCTATACATATGCATCATTTTGTCAGGATATTTGCTCCTGATCGTGATGATGTTGGGCGTTCTATTTGCTGTCCTAAGAACGGTTTTCCTAGGTATATAACGCCTTTGTGTCTTCTTTTATCGAAAATATCGTTCAAAAAAGAATCAGGAACCCACGCTACACTGGTTCACCCTCCCAGACGGCAGGAGAAGATATCTTCCTTAGTCGCTTTATGATTTGCGACGATGGGGGAAGAATTCCAAAATTTGCCCATCGCGCCCCTTGCGCACTGTTCCCAAACATGATATACTAACCCCTGTCGCGTGAGCGTGTGCGTCTTTCGTGCGCGCTTGCATAAGAATAACTCTGCCGCCGACATGAGCGGCGGCCAAAGA # Questionable array : NO Score: 8.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:-0.71, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.30,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 62415-61916 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB290952.1 Selenomonas sp. oral taxon 138 str. F0429 Scfld560, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 62414 31 96.8 35 ...........T................... TTACGTCGAGCCGAAGGAAGGCGCGGAGGTCGAGT 62348 31 93.5 36 ...........T.......A........... GCCCCCATAAGGTGAAGGATGAGAAGAAAGAACGGT 62281 31 96.8 35 ...........T................... CGTCTGCCCACTCGGAATGCCGCCGCCCGCAATGT 62215 31 100.0 35 ............................... CCATGCGTACGATGAAATACGCCGACGTGACCGGT 62149 31 100.0 37 ............................... GAACTATACGGACGCGATTATGTGCCGTGCGGCGGGT 62081 31 100.0 38 ............................... CTCGGCATACCGGGGACAAGCGAGAAGAGCTACACCGT 62012 31 96.8 35 ........A...................... CTTGACGACGTATCCGACGAGAATCATGCGATAGT 61946 31 96.8 0 ........A...................... | ========== ====== ====== ====== =============================== ====================================== ================== 8 31 97.6 36 CGCGCCCCGCACGGGGCGCGTGGATTGAAAC # Left flank : CGTGGATTGAAACCCATATCCTCCGTACAGGTGTCAACGGTATAGCGTCGCGCCCCGCACGGGGCGCGTGGATTGAAACGTCCGCGTTGCCGTGACAGCGAACACGTCCGCCAGTCGCGCCCCGCACGGGGCGCGTGGATTGAAACTCGAACAACAAGCAACGCATCATTCCTAATCGCGTCGCGCCCCGCACGGGGCGCGTGGATTGAAACGCAAGTGTCGAGGAAGCTCTCGCGGCGGCACGAGGTCGCGCCCCACACGGGGCGCGTGGATTGAAACATCGTGAGCGGTGCGAAGGGCATCAACATGAAGCGTCGCGCCCCACACGGGGCGCGTGGATTGAAACTGGTGGAGGAGACCTACACGGTGCGCCCCGGCGAGTCGCGCCCCACACGGGGCGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNTCGCGCCCCACACGGGGCGCGTGGATTGAAACGACGAATCCGTTCCGCATCGGGCGCAACGGCATCGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCGCCCCACACGGGGCGCGTGGATTGAAACGATGGTAGATTGAGGAGCGTCGGACTGGAATACGTCGCGCCCCGCACGGGGCGCGTGGATTGAAACCAAAACATACGCATATAAGCAAAGCGGCGCGTGGATTGAAACTCTGCTTTCGCGCGGCAATACGACCTCTCCGAGAGTCGCGCCCCACACGGGGCGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNAGTCGCGCCCCACACGGGGCGCGTGGATTGAAACACTGTGCCGTCATCGACTGTGTACGTCTCCGTGGTC # Questionable array : NO Score: 8.83 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGGCGCGTGGATTGAAAC # Alternate repeat : GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.30,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,10.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 62933-62569 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB290952.1 Selenomonas sp. oral taxon 138 str. F0429 Scfld560, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 62932 31 96.8 35 N.............................. CCATATCCTCCGTACAGGTGTCAACGGTATAGCGT 62866 31 100.0 36 ............................... GTCCGCGTTGCCGTGACAGCGAACACGTCCGCCAGT 62799 31 100.0 35 ............................... TCGAACAACAAGCAACGCATCATTCCTAATCGCGT 62733 31 100.0 36 ............................... GCAAGTGTCGAGGAAGCTCTCGCGGCGGCACGAGGT 62666 31 96.8 36 ........A...................... ATCGTGAGCGGTGCGAAGGGCATCAACATGAAGCGT 62599 31 96.8 0 ........A...................... | ========== ====== ====== ====== =============================== ==================================== ================== 6 31 98.4 36 CGCGCCCCGCACGGGGCGCGTGGATTGAAAC # Left flank : TCACTGCGCCGCATAGGTCGCGCCCCGCACGGGGCGCGTGGATTGAAACATCTCAATCCTCGAGAATATGCAGCGCTCAGGGGTCGCGCCCCGCACGGGGCGCGTGGATTGAAACGACTCCGGGGCTTATTTTTGTGCTCTAAAAAATAGTCGCGCCCCGCACGGGGCGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TGGTGGAGGAGACCTACACGGTGCGCCCCGGCGAGTCGCGCCCCACACGGGGCGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNTCGCGCCCCACACGGGGCGCGTGGATTGAAACGACGAATCCGTTCCGCATCGGGCGCAACGGCATCGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACTTACGTCGAGCCGAAGGAAGGCGCGGAGGTCGAGTCGCGCCCCGCATGGGGCGCATGGATTGAAACGCCCCCATAAGGTGAAGGATGAGAAGAAAGAACGGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACCGTCTGCCCACTCGGAATGCCGCCGCCCGCAATGTCGCGCCCCGCACGGGGCGCGTGGATTGAAACCCATGCGTACGATGAAATACGCCGACGTGACCGGTCGCGCCCCGCACGGGGCGCGTGGATTGAAACGAACTATACGGACGCGATTATGTGCCGTGCGGCGGGTCGCGCCCCGCACG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGGCGCGTGGATTGAAAC # Alternate repeat : GTCGCGCCCCACACGGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.30,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [25.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 63750-63318 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB290952.1 Selenomonas sp. oral taxon 138 str. F0429 Scfld560, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 63749 31 100.0 36 ............................... CTCCGGCTGCGCGTCATACATCTCAGGTAGATATGT 63682 31 100.0 37 ............................... ATGACAGCGGCAACGCTCGGATGATCGGACCACCCGT 63614 31 100.0 36 ............................... ACCCGTACGCCGTGAAAAAATGCCATATTCCTTAGT 63547 31 100.0 36 ............................... TAAATTCTTGAGTCCCATTCGCTTCCACCTCCCTGT 63480 31 100.0 35 ............................... GCATTATACACACCTCCTCACTGCGCCGCATAGGT 63414 31 100.0 35 ............................... ATCTCAATCCTCGAGAATATGCAGCGCTCAGGGGT 63348 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 7 31 100.0 36 CGCGCCCCGCACGGGGCGCGTGGATTGAAAC # Left flank : CTATCCGCCGTTTTTGTGGAAGTAGGAACTTGCCATGTATGTTTTAATCACCTATGATATCAGTACAGTTGATGTTGATGGGCGCAGGCGGTTGCGCCAGGTCGCACGAAAATGCAGAGCGTATGGGCAGCGCGTGCAGAACTCTGTCTTTGAGTGTAAGGTGGATCCAACCCAATGCAAGCAATTGGAACTTGCGCTGCTGGATATCATTGACTTGCAGGAAGACAGCCTGCGATTTTACTACCTCGGAAAGGACAAAGGACCGAAAGTAACGCATTATGGTGTTAAAGAGTCCTATGACTTGGAGGCGGCCATCATCATCTGAGCATTCATTACTGAGTGCGAAGGTGAAGTGAACAGAAAATAGAATGTAAAAATATAGGTGCGAGAACCATGCTGCAGGAGGGGCGTGGGACTTAGGTGCCGAGAGAATCGTATTTGTGGAGGGGAATACCCATAAATACGTGGCAGAGGAGGGAAGTCGTGATCTCTTTTGCAGT # Right flank : GACTCCGGGGCTTATTTTTGTGCTCTAAAAAATAGTCGCGCCCCGCACGGGGCGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCCCCGCACGGGGCGCGTGGATTGAAACCCATATCCTCCGTACAGGTGTCAACGGTATAGCGTCGCGCCCCGCACGGGGCGCGTGGATTGAAACGTCCGCGTTGCCGTGACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.30,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //