Array 1 456503-458036 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBS010000014.1 Salmonella enterica isolate 1058_09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 456503 29 96.6 32 ..T.......................... CTGTTTAACGCCTCATCCACCAGCGAAGCACC 456564 29 96.6 32 ..T.......................... CCGGGTTGCGCGACTTTTTAAAATTGGCGTAC 456625 29 96.6 32 ..T.......................... CAGCTTGTCGCCATCGCCGGCTTTCTCGTAAT 456686 29 100.0 32 ............................. ATCCACATTGGAACGTCAGGAACAGCGAGCTA 456747 29 100.0 32 ............................. AGATCGGAGATTGCATCGATACTGTTTACGGC 456808 29 100.0 32 ............................. CCATTCATTCGGTCACCCATGATTCTAAACAT 456869 29 100.0 32 ............................. CGTTTGAACAGGCTATGAACTGCACATGCAAA 456930 29 100.0 32 ............................. CTAATGAAATTTGGCTTGATGCCGCAAACAAA 456991 29 100.0 32 ............................. CACCCTGTAAAAATAAATTACTGCCCGTTTTG 457052 29 100.0 32 ............................. GGAGATCTAACCGTGCTGGATCGTAGATATGT 457113 29 100.0 32 ............................. TTGCCACAACCACAATGGATCAGGAGCAATTA 457174 29 100.0 32 ............................. ACTGGGCCCGATTGTCAGCTGCTTTGGCGACA 457235 29 100.0 32 ............................. AGTTATGGCGTTATGGTCCGTCAGGTTGGATC 457296 29 100.0 32 ............................. CCGAAATACGATGCCGGAATATCGTAAACGGA 457357 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 457418 29 96.6 32 .............T............... CACTGGAGATATAGCTGCTGTCGTCATCGGGT 457479 29 96.6 32 .............T............... TGGGAACCGTCAAGGCCCGAGGGTGACGGCTG 457540 29 96.6 32 .............T............... GCTTTTTGCAGTCACCGCAGATCAGCTTAAGG 457601 29 96.6 32 .............T............... CGGCGGGCCTCTCTCTCTGTTTGAGCTGTTAC 457662 29 96.6 32 .............T............... TCAGGAAAAAAACTGGAAGCATGGGTGATCGA 457723 29 96.6 32 .............T............... TCTAACGACAGCATTGTTGTAACCCATTGGAT 457784 29 100.0 74 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCACGTGTTCCCCGCGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 457887 29 100.0 32 ............................. CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 457948 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 458009 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 98.1 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 474308-475863 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBS010000014.1 Salmonella enterica isolate 1058_09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 474308 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 474369 29 100.0 33 ............................. GGTGCTGACACCTCCAGTGTTTATGCGTTGCGG 474431 29 100.0 32 ............................. ACTTACGACCATTTAGACAAGGCGCAAAATTT 474492 29 100.0 32 ............................. CGACCGGACTCAACCGTATTAAAGCGCATATA 474553 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 474614 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 474675 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 474736 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 474797 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 474858 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 474919 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 474980 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 475041 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 475102 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 475163 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 475224 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 475285 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 475346 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 475407 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 475468 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 475529 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 475590 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 475651 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 475712 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 475773 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 475834 29 96.6 0 A............................ | A [475860] ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCTGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //