Array 1 1923952-1922092 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANQD010000011.1 Cronobacter sakazakii strain HA18075 NODE_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1923951 29 100.0 32 ............................. CGCCACTAACGCCGTTTTGGCATCCGGTGCAA 1923890 29 100.0 32 ............................. TTTATCGTTCGGGCGGTAGATCCCTGCGTTTG 1923829 29 100.0 32 ............................. CCCCTTCTGCACGGCAACGACAGGAATCACGC 1923768 29 100.0 32 ............................. CGCGTCGGTATCACTGTCGATACCGAGTTTGG 1923707 29 100.0 32 ............................. GTCGCGCAAAGCGCCATGCGGCCTGCGCCCGG 1923646 29 100.0 32 ............................. CCCGCAGCAGACAGAGCCTTTGTCACCGCATC 1923585 29 96.6 32 ..A.......................... CCTACCGACTCCGAGAGAACGCGTACACAACC 1923524 29 96.6 32 ..A.......................... GAAAATGTGTTTAACGCAGTGAAAATGATGGA 1923463 29 96.6 32 ..A.......................... GGATTGCACGGGCAGTACTAATTACGTTGGAA 1923402 29 96.6 32 ..A.......................... CGCAGCGTGTTATCACCAACAGAGGTGTTTCT 1923341 29 100.0 32 ............................. CGGCACCACCTTGACGCAGCTGGGCTGCGAAC 1923280 29 100.0 32 ............................. CGGCAGAGGGAGGGGTTTTCGGTGATATTTCT 1923219 29 100.0 32 ............................. ATCACTTTCGCTTTACACGTGGTGACGATCCG 1923158 29 96.6 32 .A........................... CGGTGCCTGAGCAACTCGATCGCAATATTATC 1923097 29 100.0 32 ............................. TTTATTTCGTGCCAGGTAGCGTGTGTGAACTC 1923036 29 100.0 32 ............................. TATGGCGCTGGCGGTTCCCGGTGCAAACGCCT 1922975 29 96.6 32 ............T................ ACTACGGGTCGGACGTTGTCGTTACTTACCCC 1922914 29 96.6 32 ............T................ AAGGGTGGCGAACGTGCGTGAAGGGATTTCGA 1922853 29 96.6 32 .....T....................... GTTCTTTAACGCTCTGGTGACGCTTACCGTAT 1922792 29 100.0 32 ............................. ATTACAACCAGATCCCCGGCACTACGCAGACA 1922731 29 100.0 32 ............................. CCAGTTTCTCAACGTCCAGGCACGTGTGACGC 1922670 29 96.6 32 C............................ GATAACCGTAGCCAACAGGCCGTAGAAGAGGA 1922609 29 100.0 32 ............................. CTATTAACGATCCCGACGTTCGCGGCGTGCTG 1922548 29 100.0 32 ............................. TGGACGGGGGTTAAGCGCGGAACAGCTGAATT 1922487 29 100.0 32 ............................. ATCCCTCGCGGCGTTTTAAACTTGAGCAGCTC 1922426 29 100.0 32 ............................. GGAAGTAAACCATGCCCTACGCCACACCAGAC 1922365 29 96.6 32 ............A................ ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 1922304 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 1922242 29 100.0 32 ............................. CCGCCTGCGTCCTGACCGGCCTGTAGGCTTTT 1922181 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 1922120 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.5 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCAGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATAGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : ACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCAGCCTTTAAACTTTACAGGCATTATTGAACATGAATAAAACCATTTGCACCTTACTTATTACTGCCGCGTTGTGTAGTACTACCGCTGTTGCCAGTGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGCACATGGGGTGATCGATTGTATGGTGAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.95, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1951723-1950169 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANQD010000011.1 Cronobacter sakazakii strain HA18075 NODE_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1951722 29 100.0 32 ............................. GTAAACGGCGTTGCGCCGTCCGTCGTTGCCGA 1951661 29 100.0 32 ............................. TGATGTAGCTCACCTGGCGTTCCCCACTCTCC 1951600 29 100.0 32 ............................. CCGGTACGGTTAGTGGCACCAGGCTTGGCGTG 1951539 29 100.0 32 ............................. CGTCGCTGACGGCGCGGTACGTGATTACCTGT 1951478 29 100.0 32 ............................. TGGCGGGTGGCGCGGGTTTAATCGGATTAGGG 1951417 29 100.0 32 ............................. CCGGATTCCATATCGGCGGCGGGCATAGGTGA 1951356 29 100.0 32 ............................. TTTCCCCAGCTGCTCCCGCAGCACCTTACAGG 1951295 29 100.0 32 ............................. CGTGCTGCCGAGGTTGAGCGCCAGAACCAGGG 1951234 29 100.0 32 ............................. TTACAGTTAAGCGAAGAGGTAAGAGCGGCGAA 1951173 29 100.0 32 ............................. AGATTTACGAAATAGACCCGATTCAGTGCATC 1951112 29 100.0 32 ............................. CGCTTAGCAACCCTAACGCTTATGCATTCCTC 1951051 29 100.0 32 ............................. TCACTTCGGAAAGCGGCGACAGCAAATAAGCA 1950990 29 96.6 32 ..T.......................... CGCACGCTTCCGTTTTCGCCGCGAGAGTGTAA 1950929 29 100.0 33 ............................. GCTAGCGCGTTGAATGTGACGGTAGTTTTTCGC 1950867 29 100.0 32 ............................. CCGCTGACCAGGTCATTACAGCGCTTGCTGGT 1950806 29 100.0 32 ............................. AAATGTGGGCCAGCGGCAAAAGCATCTACTTC 1950745 29 100.0 32 ............................. TAATACCGCCGATTCGATCCACTCCGGCTTCC 1950684 29 100.0 32 ............................. TAGACCCTCGCACGGTTCGTCATTATCTCTCA 1950623 29 100.0 32 ............................. AGCATCTTTTAAAGAGGTCTTTATGGGCCACA 1950562 29 100.0 32 ............................. ATTTGGTTCGGCCTGAACGATATACCGGTGAG 1950501 29 100.0 32 ............................. CCTCTAATACACAGGAGTTGCCACCCGGCGAG 1950440 29 100.0 32 ............................. AGTGTCTACATTTAATGATGTCAGTTTGTGTT 1950379 29 96.6 32 .C........................... TCTTCCGGCGCGTCGGCCAGCTCCACCTGCTC 1950318 29 93.1 32 .C.........A................. ATAACGGCCAACTTTACATTTAAAAATGATGG 1950257 29 93.1 32 .C.........................T. AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 1950196 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGCGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : CTCAGGCTCTTAGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACAATCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77343-76593 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANQD010000025.1 Cronobacter sakazakii strain HA18075 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77342 28 100.0 32 ............................ GCTCCCGTCTTTCACGTTGAGGCGTTTCCCCA 77282 28 100.0 32 ............................ GTCCATCACCATCACGTTGACTGCGCCGCTGG 77222 28 100.0 32 ............................ GGATCGCCCGGCCCAGCCCCCTCCCTGCAAAG 77162 28 100.0 33 ............................ GCAAGGCCGCTAAAAATTTCGGCGGCTCTGTTA 77101 28 100.0 32 ............................ AATGAAACCATAGACGGTAAAGAGCATATTGT 77041 28 100.0 32 ............................ CTGAAAGTTGACAACGCTTACCTGATGTATAT 76981 28 100.0 32 ............................ TGGCACAAACGACTATGGCGCAGCGTGGGAGA 76921 28 100.0 32 ............................ GTCGTGCTCAGGGTGGGTGTGAGCGGCACCGG 76861 28 100.0 32 ............................ GCACTGCTGCGCTGAAACGCGACCGCGGATTG 76801 28 100.0 32 ............................ GCGCGAGAGGAACAGTTCCCACGGCGCAGCCG 76741 28 100.0 32 ............................ TCCCAGTCGTCGTTAACAATCGCGTAGTGGAA 76681 28 100.0 32 ............................ GCCTGCGCCTGGAGCGCGGTAAACGTCTGCCG 76621 28 85.7 0 ......................C.T.TC | T [76599] ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAAGTGTTGATTTTTAATACGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : CAATTCCCTCGCCGCCAGACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCTGGCGGGCAAAACCACATTTGCCGGTAAAAATGTCACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGTGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGACCTGCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //