Array 1 539525-539193 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018178.1 Calothrix sp. NIES-2100 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 539524 37 100.0 35 ..................................... CATCCTGTAACCATAGTGGAATGTGATCGCTTCTG 539452 37 100.0 37 ..................................... TTACCAAATGTGGGGCAAGCATTTAAATTGTGCAAAA 539378 37 100.0 40 ..................................... CATCTTGCAGCCAATTCGGCAAATTCGCATTAGCAAAAAA 539301 37 100.0 35 ..................................... ACTCTGCCAAAGCCATCAGCAATGATGCGATCGCA 539229 37 86.5 0 ....T............AAT.....C........... | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 97.3 37 GTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAG # Left flank : ACCTTGACAATATAATAAGAAAATAATAGCGCCGCAGTTCATGCTCTTTAGAACGGCTCTAAAGAGCCGCTGTACTGTGAAAAATCTGGGTTAGGTTGACCATAGCGAAGATTGGTCGATGCTTTCTGACCCTGGTAGCTGCCCGCTTCTGATGCTGCCATCTGTAGAATTCTATAGATGGGATAGGTGCGCTCCCAGCAATAAGAAGTAAGGCTTTTAGCAATAGCCGTTGTTCGCAACGGTGCGGGTTACCGCAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAACCCTCCAAAATATTTTTTTGGCATGTCAAAGCGGGGGCAAAATCCCTGGAGTCCTGCCAGAATATTAAAACCCTTATCCAGTCTTAGCTAGCAAAACTAGTGTGTCAATGCATTTAGTTTTTTGATTTTTGGTTTGAGACTCTATTAAGCAGACCTGCCAAATTATGTGTATGGAAAGCTTTTATAGGAAGGGTTCTAGACGGGTCGA # Right flank : CAAATTTTTGTCGTTACTATGTGAAATATTTGTTTGAATTAGGAGGGTTGAAAGGCGCACTTCGTTCGGGATAATTCCGACACTGTGTATAGTAAAATCTATGCGACTTCAATTAGGAAAATCATCTCTGGAAAGAGATTGACAAATAATTTGTCGTTTTGGTTTTTTGACAAATAATATGTCGCCACGGACAGATAATTTGTCGCTTTACAACAATAATCGGGATGACTGGATTCGAACCAGCGGCCCCTTCGTCCCGAACGAAGTGCGCTACCAAGCTGCGCTACATCCCGGCATAATAAGCCCATTGTTTAAATATGATATCATTAATAATGGTAAATGTACACCCATGCTGATTTTTATTTGGGAAATTGCGATCGCCTGGGTAGAATAGTCGAATCACCTGAAAGTTCTGATTTTCAAAACATGGTGACTAACAGTAATCATCAGTGAGATAATTTTAATATAATTTAACATTTGCTTTCCCGCCGATGCTAAGA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 2 672217-672536 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018178.1 Calothrix sp. NIES-2100 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 672217 37 100.0 36 ..................................... TAACCAATTGGAGCGTAAGATATCCCAGCTAAAAAT 672290 37 100.0 33 ..................................... GTTAATAGGGATATCAGCACTAAAAAGCCTAAA 672360 37 100.0 34 ..................................... TTACGTAAAAACTCAACAGCCTCATTACGTAATT 672431 37 100.0 32 ..................................... CTATGCCCTTGTAATCTTCCTCAGTAATGAAT 672500 37 97.3 0 .....G............................... | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 99.5 34 CTAGCAATACCTAATAATCCCTATCAGGGATTGAAAC # Left flank : ACACTTTGATAGTACACCTGTACTAGTACACCTGTAGAGATTTATATCCGGCTCAAAACTACAAAATCTACAAAAACTATTACAAAATCCTTGCTACATAAGGTTTTTGTAGTTTGTAATTTCTACAAAAACCATTACAAAAAACTACAAAAAATTTTGTGGTCTTATTGAGAATATTGAGCTTATTGAGAATATCTGTACTATTACAGTAGTACTTAATAAGCATAAATACTCTAGTACAGTTATTTGCAATAAGATGTTTTAATGACAATAGATAGTTAAAAGGTTCTAGATTATCTAAGTACCCTAGATTCATACATGCTTTTACCCTGGTCTAGAATGCCCTAGAAAAGCTTTGATTTTGAATTGATTGGTTCAGTGTTGATCTATAGCTATTTGACCAAAACCTTGACAGTTTAATGGCTGTAATGATATTTTTAAGTAGATTGACGCAACCGAACCGTGAAAACCTTATAGACAAAGACTTTCAAAAGGTAGCC # Right flank : CCAACAACCAAATATTTTTTGTAGTTTTCAATCTGGCTACAAAATCTGAAAATTATTATAAATACCCTTGACAAATTTAAACTTTTATGCTATAGACAATAAATTCTATATTTTTAAAATTAAAAAGTCACTTTTTATAATGTCTGACAAATTAAAATAATTTTCCTGCGGGTCTGCAATATTTTCTACCAGAGTTGATATCCTGTAAAACTTGTATATCACCCTGGTCTACAGCTTCTTTAATTATTTTTGAGCAACTTTGGTTAATGTAGGTTATTGCGTTGACAACTATTAATAAAACCAGTATTCCTGAAAAAATTACAATTTTGTTTCTAGTCATAACTGTTGCTAAATTATTTCTAAAATTCTAGCAAACTTTATATTGTAAAGATTATTTAAAGATAATTGACAAAATTACATAATAGTGTAAATACCTATTGTGTCTTAGATAACTATTAAATATAATAGATTTACTGACGTATAAGTTTATGTTATTAAAT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAGCAATACCTAATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 3 833646-833323 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018178.1 Calothrix sp. NIES-2100 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 833645 37 100.0 33 ..................................... GATTTTTGAAAAAAAGTTCTTCTCTTACATAAT 833575 37 100.0 35 ..................................... TCGGGGAATCTGTAGCGATAGACTGCTGCTGCATA 833503 37 100.0 34 ..................................... CGCTCAAATACGCCAACATCTTCATATCATTAGC 833432 37 100.0 36 ..................................... GCTTCGCTTTTATATCTGGGGACACCCCAGACCCCG 833359 37 86.5 0 ....T.................G.....C...T...G | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 97.3 35 ATTGCAATTAACAATAATCCCTATCAGGGATTGAAAC # Left flank : ATCACCGAACATTTAAAGTGTTCAACCAACAACCTAAAATGAACCGTTACCAAGCCGAAACCCTAGTCAAAAAGGCATTTCCTCCAGTCCCCTACTCGGAAAATGATTTCGTCAATGTCAAAGGAGATTATTCTCCCTTCAACGGCAACCTGATTTATTGGAGTCAACGTCAATCCAAATTCTATGATGGTGCGACATCCAAAGCTTTGATTTCTCAACACCACAAATGTGGATTTTGTGGCTTAAGTTTTGTAGATGCTGAAAGAATTCACCTCCATCACATTGATGGTAACCATGACAATTGTCATCCTAAAAACCTTTTGGCTATACATGAATCTTGCCACGATTTAGTTCACTATCGCAAAGGCAAATAGCCTCAGATTTGTCGAAAGCTGGATGCACCGAAAGGCGCACGTCCAGATTGAAATGGGAGGTGCGGGGGATAATACCCCCCATCGACCCAACCAAAGAGAGGCAGCAAGAAAACCATTAAGAGCAGC # Right flank : CTTATTGATAATATTGCAAATTTTGGCGGTAATTTTAAACCTAAAAACGATATTTTTTGAATTTATAAATAGTTTATCAACTATAAATTAAAAAATAAAAAGCGTTTTATAAACATCACTAAGCTTTAAACAAATGATTTTTGATTGGGGAGCATCCCAATTTTGCCCTGAATAAATTTGTAGTGGGAGCATCTTGCTCCCATTGGTCAAACCAGCAGGCTAAAGAACCATCACTACAAAAAATCAATTTACACATTTGGGATGCTGCTCAAATTGATAATCAGTTGTTAATACTCAATTAATTATAAAAAGCGTTTTATAAACATCACAAGGCTTTAAAAAAATGATTTTTGATTGGGGAACATCCCAATTTTGCCCTGAATAAATTTGTAGTGGGAGCATCTTGCTCCCATTGGTCAAACAAGCGGGCTAGAGAGCCATCACTACAAAAAATCAATTTACACATTTGGGATGCTCCTGAAAGTGAGAATCAATTGTTA # Questionable array : NO Score: 8.92 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACAATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 4 836903-835841 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018178.1 Calothrix sp. NIES-2100 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 836902 37 100.0 34 ..................................... CCCATGAGAGTAGGCTTAACAAGCAGAGTATTTT 836831 37 100.0 37 ..................................... ATTGAACAAATTAAAGATGAGATAGAAGTTGATGCAT 836757 37 100.0 36 ..................................... TTTCGCTACCTTTGCCACACCTCAACAAGCCACTGC 836684 37 100.0 38 ..................................... TAGCTGTGGAAAATATATATTAAGAGATTTAAAATAAA 836609 37 100.0 37 ..................................... CCCTTACCAACATATTTGGATAAGTAAGCGGCAGGTG 836535 37 100.0 33 ..................................... GCTCTTGTTGGTGGTGGGACTTCATCTGGTAGT 836465 37 100.0 41 ..................................... GATTTATATTCAAAACATAGCAAGCTTTGGAATGATTCTGA 836387 37 100.0 34 ..................................... TAATCTCGATGAATTTGCATTTAAATATCCCGAT 836316 37 100.0 36 ..................................... ATCAGCCACGAGAAAGGGCGGGATATGACCACCGAC 836243 37 100.0 35 ..................................... AAGGATTTATGGGTGAGCAAACCTAACAAACCCTA 836171 37 100.0 34 ..................................... ATACTGGCAGTAGTAGCCAGACTCTTTGAGAGTA 836100 37 100.0 41 ..................................... GAGCAAATCGGCGGTAGCTTGTTGAGGTGTGGTGAATGTAG 836022 37 100.0 35 ..................................... TAAGTTTTAAATTCTTCTCATGCTTGTTGAGTATT 835950 37 100.0 36 ..................................... GTGGCTTGGATAAGTTCCTTGAAAGTATTGATGTTT 835877 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 15 37 100.0 36 ATTGCAATTAACAATAATCCCTATCAGGGATTGAAAC # Left flank : CAGAAGACAAACGCCGCACGAAAATTCACAAGGTTCTCAAATCTTATGGACAGTGGATGCAGTATTCGATTTTTGAGTGCGACTTGACACACACTCAGTATGCTAAACTGCGATCGCGTCTCTCTAAATTAATCAAGCCAGACCAAGACAGCATCCGATTTTACTTCCTCTGCGCTTGCTGTCAAGGTAAAATTGAGCGCATCGGCGGCGAAATGCCAATCGACACCACAGTGTTCTTTGCTTGAGTTTTGCGTCAACCAGTAGGTGTTGGAAACATGAAGGAAAATTTTACGCCCCAAAAGCTTCCCCCTGCTGCTTTTGAACCCTCTTACACCTATGATGAGGTTGACGCAAACTCTCTAACCCTTGCTACACAAGCTTTTGAGCTTTTTGATCCCTGATACCTATTGACAACTCAAGCACCCAAGAGATACTTTGGTTGGAGGTTGACGGAACTGCACCTTGAAAACCAAATATATCAACGCTTTCAACTCCGGGCG # Right flank : AGTGCGACTCGTTCTAGAGTAAAAAATACTACCAAGTATATAGCTCTAGGTGAGAAAAATCCGGATGAAACCTGGAAAATCTCATAACTAATTCACGGATGTAGGTATAGAATCCTACCCTGGAAAGGAAACAGTGACTCCCAACCTGTCCACACCGACTAGACTCGGAATTCTAGAGAGTGAAGCTGGAAACAGGACACAATCAGAGCTAAAAGCAGATATGGCACACTGGTGTTAATGGGGAGATGACAAGGATAAACAAGACCTAAAAAAGCGTCATAATCCCAAGCGGTAATCTGAAAAAAACATACCGACTTGATGTTTTTATTCTCGCGGCAATATTGTTTCGTTAGCCGTATTCCTATGAGAAGAATATTGGCGAACTGGTCTGTCCTAAATCATCAAAAAATCCAGAATTGGAACGAGGAAAAATAATGATGGAGTCTAGAGAAAGGTCGAAACTCTAGTAGGTAAGACGAGATAAGTAAACCTCCACATTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACAATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 5 965041-963690 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018178.1 Calothrix sp. NIES-2100 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 965040 37 100.0 38 ..................................... CAGGTAAAGCATAAGGATTTACCATTGTGCCAGGAAAA 964965 37 100.0 34 ..................................... AATCAAAATACTATTAGCCAAGTACCAATAACTA 964894 37 100.0 33 ..................................... ATTCACTAATTTAATCTGTAGTGCTTATATAAG 964824 37 100.0 37 ..................................... TAGCAGGTGTTGGTGGATTGACATAAACAAAATTTTG 964750 37 100.0 36 ..................................... AACACCAGAGACGATCGCATTATTACAAAGCATCGA 964677 37 100.0 41 ..................................... ATCTGTAATGTGAACTTCTAGGGTCATATACCTCTGTAAAT 964599 37 100.0 39 ..................................... AAATTCCATGTTTGTCCATTGCCATCAACCCTGAAGAAC 964523 37 100.0 32 ..................................... GCAGAACCAGCAAGAACGGAACCAGCTTCATA 964454 37 100.0 36 ..................................... CTCTGAGTACTGTTCATTGCAGGATTTGAACAACAA 964381 37 100.0 35 ..................................... TTGGCTGCTTTGACTCCAGGTGAACGGGTACTGAC 964309 37 100.0 35 ..................................... TGAACCCACATTTATTTCCTTATTTGGGGCATCTG 964237 37 100.0 35 ..................................... TCTACAGAATAAAACCCCCTAAAAACCCTTGCTAT 964165 37 100.0 34 ..................................... AAATTCATAAGGCGATCGCCTCATCCATCTCAAT 964094 37 100.0 37 ..................................... TCTCGCTTCTGCTATTGCATCTACTATGTTTAATAAC 964020 37 100.0 36 ..................................... ATATGGTTTGTGTACCAACTAAGTAAACAGACATAC 963947 37 100.0 36 ..................................... TCCAAAAAACCGCAAGCAAGCGCGAGGAGACACGCA 963874 37 100.0 38 ..................................... TATTCTCACCTTGGCGACTAGAACAGGATGCACGCCAG 963799 37 100.0 36 ..................................... ATCGCAATGGAATTACTTCGCTATCACAAAAGCGAA 963726 37 97.3 0 ........................C............ | ========== ====== ====== ====== ===================================== ========================================= ================== 19 37 99.9 36 ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Left flank : CGTCATCAAAAATTAAATCTGTTGGTGGTGGGGTAGGTTCCCAATCTGGGACAGTAGGTGCAGGGAAACTCTGGTTTTCAGTGATGTTAGTTGACATGGCATAACCTGATACATTTACGCGATATTTGTCATTTGTGCTTTGTCCAGGTAGAATCCAATATGAATTATCTGTATTAAATATTTGTTATTTGTCCCCCTTTGCCTGTGCCCCTACTTTGTCCCTAGCTTCTAGTCTCTAACCCTTGACTCTAGCGTCAACCAGTAGGTGTACAAAAACAAGAGTCAAATTTCTCGCCCCAAAAGCTTACTGCCTCTAGTTTTGAACCTTTTTCACAGATTTTTAGGTTGACGCAAACTCTCTAATCCTTACTATACAAGCTTTTGAGCTTATTTTAGTTATGACACTCTTGACAACTCAATGCCCGAAAAGCTACTTTAGTTGGAGATTGACGAAACTGTACCTTGAAAACCAAATATACCAAGGCTTCCAACTCCGGGCG # Right flank : AACACAAATGATCCCAAGCCTGTCACTGCGATTGCTTCGTCGTTCCTCCTCGCAATGACAATTGGGCATTTTTTTACTGGGAATACTCTAAGTCTAATTTGGGCTTTGAAAACAGTCATTCCCTAGACCCTAGCCCCAAATAGCTACATTTATTCCGGAAACCTGTAACCCTCAGCCGTAGAAAGAGTTGTTTGTATCAATATGTGTAGCACAAAATACAAAGTATTCCTCTTCCTAGCCTTAAGATTTTTAATCACAGGCTGGGTTAAACCACTTTCAGGAAAATTCCCGAAAGTACTGGGTTAGGGGTAATCAAACTCTACTTGCAGTGGCAATAATATAAAGTGAGATGGTGAAAAACTGGGCGTTGGTTATTGGTATCAATCATTACGACTTCTTGCAACCGCTCAAATATGCGCAGCGGGATGCAGAGTTGATGCAGAATTTGCTTGATAATGAAATAGGTTTTGAGCGAGTTTTCTTATTTGCGGATGATTCAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 6 1017437-1016818 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018178.1 Calothrix sp. NIES-2100 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 1017436 35 88.6 36 ACAC............................... TGGTGACAATCTTTCTAAAAAGGAAGATTTTGTTAC 1017365 35 100.0 36 ................................... CGCTTATTCATTCTTTGCAAAAACAACTAATTCAGA 1017294 35 100.0 41 ................................... CGTAGCGAAAGCTGACAAAGGTGTAGTAAGGGTAACTTTTG 1017218 35 100.0 41 ................................... CTGCAATTACTTGAAAAACGCATAAAGTTATTGCAAGAAAA 1017142 35 100.0 39 ................................... TTTGAAGTTGTTGACAATACTATGGGATATGCTGTTAAA 1017068 35 100.0 35 ................................... CAAAATTGTAGCTAGTGGTGGTACCGCTTCCGTAA 1016998 35 97.1 37 .................................C. CAGATGAACAATTACAGGTTGCTAAACAATTTTGCAA 1016926 35 100.0 39 ................................... TTCATGTTCTAGTGAATTGATTTCAATCCTAGTTGATAG 1016852 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 9 35 98.4 38 GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC # Left flank : GTTTTCCTGTTACCTTTCGGTGTAGCAGCTTTCGCTTTTTGTGGCATCTTGCTCCCACTGGGGGATTAAAGCGAGATTACTCTCTTCTCTACTCGTAACATCTATCTAGCTACAAGACCCCATTGGGGTTCCTTCATATCACACGTTTGAGTTACAACCAGCTTGGGTTCCCTCTATACACCGGGGGTGCTGTTGATGTCCCTGTATTCCGAGGATAGGGCGGAATACCACCGCAGATTTTTACTTTGCTGACCCCAGTTTATCGTTTCAGTCGTTTTCGATAATTCCGCTTCACGGTGCCTCATCGAGGATTCACCAAAGTTAACCCGTTTCTGGTTTTACCCTAGCACTTGACCGACATTACGACTCGTCGATGTCGCGCATTTCACCCTCTAGCTTTGAAACATCGCAGTTACCCGCAATACCCCTTTGGGCGGGTACTGGTTTGGACATTTACCAGGAGTATCGAGATACTCACTCTCAACGTGCGACTGATAGTC # Right flank : CCTACCCTTATAGAACACTTGCTATGACTGGGTTTGAAAGTGCCATTTTAGCGGGGGGTCTAATTTTACTGTCAATAAGCATAGTTTACTGACAATAACTCCCACTTACAGACATCTCAAAGCCTTACCCAGTAAGCGATTCGCGGGGGTCAACGAAAGAATCAGGGTTTGAGCAATCGCTCTACCCCCGCGAAAAATTTACGTGTGTTTAGTCAAAACAAATACTTTTGCTTTCACTGGGAAACGTCAGATTAAGTTTTCAAGGTTCTGTGCATTTATCAAAGAGTATAACAAAGTACTCTGAAATTTTCACCAGCTCATTTACGTTTTATAATACAGTCTGGTTTATTTCCACTAACTGACTTCTATTATTCCCAAAAAAATACCTAAAACTCGTATTTATTGGCTTCAGAGTCGTATTGATTAGCTTCAGAGTCGTATTGATTGACTTCAGAGTCGTATTGATTGACTTCAGAGTCGTGTTGATTGACTTCAGAGTC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 7 1159031-1158701 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018178.1 Calothrix sp. NIES-2100 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 1159030 38 94.7 35 ........................A............C ATAACAACTAGCGAGTCGCGATTCCCTTCTGTAAT 1158957 38 100.0 35 ...................................... GAACGGCAGGGAATTGTTAAACACTGGCAATGGCG 1158884 38 100.0 38 ...................................... TTGCGGCAAACTAGCGATCGCATTGGCTGAAATAGCCG 1158808 38 100.0 32 ...................................... CTGGCTGCATGTGGATTTAAAGTTTCCCCTCT 1158738 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ====================================== ================== 5 38 98.9 35 CTTTCAACCCGCCTCAAGCTGTGAGGGGTATTGAAACT # Left flank : CTATAATCTTGCTAATATAGTTAAGCGCGAGTGCGGCGGCATAGCCAAGTGGTAAGGCAGAGGTCTGCAAAACCTCCATCCCCCGGTTCAAATCCGGGTGCCGCCTTTAACAAATGTCGATTGTCAAATTATTTGTCCGCGTTGACAAATTAATGTCACTTTTGACTAATTACTGTCCGCGTTGACAGATTGATGTCCTTGATGTGCGTTTTAGACAACTTAATGTCGGTGTTGAAAAATTAATTTTCCCGTTGACAGGGAATAAATATCACCGCTAACACATTAAGCGTCATGACCAAGGACTAAACCCTTTATGTAAGGATTGCAGACCTCTGCCTTACCTTTCAACCCACCATTAAATCTACCAAGGTTTGAGCGTAATTGCTCAAACCTAATTATAAATATTCAATTTTTAACCTGTCCATTGCTACAAGCGCAGTTGAAATTAAGGTAATAGGCGAAGACGCGATCACCGCCCAAATTCTTGCACCATAAGCATC # Right flank : CCAGCGCCTCAAATCCTTCACCAATAAAGACTTCTAGAAGCATTTTTGTCAGATCTGCCAAAATCGCCTGTCACTTAACACTTAAAAAAGTAAATTAACTGACACCATAAAAGCTACAAGCCTTAATCAATAAGCGATTTGAAGTTTTGGCAGATCCCCAGGGAAATTGACCCGCTTCGATTCGCCAAAAAATAATTAAGGTGGGTTCCTCCTTGGTCGGAGGTGATTCAGTAGCCACCACTGCGGTAAACCCGCACCTCTATTACTGGGGGCGCACCTTATTCCTATCCACAAGGGATAGCAGCATCAAGGTGGGCAGCTACCAGGGTCAGAAAGCAAGACTGTTTAACAGCAGTCAAACTAACCCACATTTACACAGCACAGCGGCTTTATACAAGCATGAACTGCGACGCTATTAATGATACTTATTCTATTTTCAAGGTTCGGTGTTTTGTCAATCAGGTTTTTTGGCGGGAATGGTAAGCGGCGATCGCTAATTC # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCTCAAGCTGTGAGGGGTATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : NA // Array 8 1851561-1851812 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018178.1 Calothrix sp. NIES-2100 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 1851561 36 80.6 37 ...CG.GT..............CAC........... TTCCACCAAAGTCCAATGTTTTGCAGTTGGGCGGCTG 1851634 36 100.0 35 .................................... CAGCGAAGCCGTCGCTGTGGTATTGCTATCAACAG 1851705 36 100.0 36 .................................... CAAGAATGGGAATGAAATTATTTCAAACCTATTCTT 1851777 36 97.2 0 ...C................................ | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 94.5 36 GTTACAAATAATTAAAATCCCTATTAGGGATTGAAA # Left flank : TGTGTGGCGAAGTTGAAAGCAAGCAATGGTTTAACCCCCCATCTGCCATTATTTGGTATTGTTCAGCAACTCGGCTTGCATGGGGTGCTATTCCTCCGACTCCTCCAAATAGGCTGAGTACTAGATGGTTTATTTTCCCTGAGCGTTGGGGAAAGGTTATAGACAAGCGCAAAACAAATCAGTTAAATCATAAGGTGTATCTTTACCCAAGCTGGCTTGTACCGCCAGAGTCAATCATCAGCAAAGAAGAAATTATTGCCTATATTCAACAGTTAGCCCAGCAATAATTTAGATATAATGTGGCATTAAAAATAAGTGTAAATGCTAGAGGTCAAGGTTGACACAAACTCTGTAAGCTTTGATATAAATTGATTTAAGCCATAATCTATTGCCTTGCCCAAACACATTCAGCCTGAACAGCCTGAAAATGCTATATTTTATTCAAGTTGGCGCAACTGTACCTTGAAAACCAAATATATCAATACTTTCAACTGTGGGCG # Right flank : ACTTAAGGGTTGAAAATATGCCTGAACCTTTCGTTGATCTTGACGCAATTTTTAATCTTGCTGTGAAAGAAACCGAAGAATTGATGAAACTCGGCTTTGATATTAGCGATCCTTGTGCTGTCACATCACTAGAATGGTACGCCAATAAATATCCAGAAATTGCAGAAAGGTGTAATAATGCCTTGCTAGAACTCATTGAGAAGCAAGTTGCGACTACTCCTGCATTTGTTGGTGCTGCTTACTCTGAGAATGATTTAGATGCTTTTTAAGTAATCAGTCAGATCGTGTTTGGTTGAACAATATTTAGTGATATTAAAATTAGTTGCACGCAAAGACACGAAAAAAACTTCGCGTCTTTGCGCCTACTTTGCGGGAAGGACTCCGCCGAATGCGTGAAATTATCCGACAGCCTTCTCAACAGCAACTTCTGGTAACAAGCGCTTTACACCTTGCTTAACAAAACTTTGCAGAAAAGTTATCTGCTGATTTTGCTGGAAGAC # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:0, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAAATAATTAAAATCCCTATTAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 9 2676255-2678084 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018178.1 Calothrix sp. NIES-2100 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================================================================================================================================== ================== 2676255 37 100.0 37 ..................................... GTTTTACAAACACTTTTACTTCCTGCTCTTGTAAAAA 2676329 37 100.0 38 ..................................... TTGCTTATTATTCCCATTTCCTCATAAAAAGAAACCAC 2676404 37 100.0 36 ..................................... TAAACTTTTCATCAGCATCATTAATGACTTGGATAT 2676477 37 100.0 36 ..................................... CAGCATATTTGAGTTTATCAGCATTCAATCGTTTAT 2676550 37 100.0 35 ..................................... CAGGTAACTAAACCTAAAGGTGAACTCATAGACGC 2676622 37 100.0 35 ..................................... ATCTATCAGGTATTGCTAGGCTTAACGCATCAACA 2676694 37 100.0 33 ..................................... TGAATCCGGTAGACTCCAACTCGACAGATTCAC 2676764 37 100.0 32 ..................................... CGATACTGGTAAATCGCCATTGGAAGGGGTGA 2676833 37 100.0 33 ..................................... CAAAAAGCAAAGGCTAATATGACAAATCCTACG 2676903 37 100.0 39 ..................................... ATACTTAGAACTAGACATGTGTGCAACCGGAAGCCAATT 2676979 37 100.0 34 ..................................... CCATTTTTCTAGAAGCTCTACAAATATACTATCC 2677050 37 100.0 33 ..................................... TTTGCCCATGACCTTACAGAGGAAATCTAGATA 2677120 37 100.0 36 ..................................... CTCTGAGTACTGTTCATTGCAGGATTTGAACAACAA 2677193 37 100.0 34 ..................................... GAACGGATTGTAGAGAATGCATCCGTCAACGTAG 2677264 37 100.0 34 ..................................... AAGGAAATAAACGCCAAAGCATCTGCAATGGGTA 2677335 37 100.0 34 ..................................... TCGGCTTTGTGTGGCGGTACTGCTTTCATATTTT 2677406 37 100.0 35 ..................................... CCGAAAACAACAAAACCCTTCGACACAAAAATCCG 2677478 37 100.0 33 ..................................... AATTGTACTAACATCGCTGGCGATCGCTTTTGA 2677548 37 100.0 35 ..................................... TTCGTCTATCTTGATACTCATTTGAGCAGTTCGCC 2677620 37 100.0 36 ..................................... CTCGTTTCTGTATTTACAAAATGATTATGGCACACC 2677693 37 100.0 37 ..................................... CAAATATAGCTTTCACATATCTCCTACTAAACAAAAA 2677767 37 67.6 159 ...................AACC.A.ATA.A.AT..T ATGTTTTGTCATTGCGAGGAACGAAGCAATCGCAAAGACTGGGATTGCTTCGTCGTTCCTCCTCGTTTGGATTAAGCCTTTATAAAATGGCTAAAAGAATCGCAAAGACTGGGATTGCTTCGTCGTTCCTCCTCGCAATGACATCTTACATTTAATTAT GTAGA [2677784] 2677968 37 94.6 40 G.....C.............................. GCCACAATAGAAAAGCCGGGGTAGCCCTGCGGCGACTGAG AC,T [2677971,2677974] 2678048 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================================================================================================================================== ================== 24 37 98.4 41 ATTGCAATTACAATTAATCCCTATTAGGGATTGAAAC # Left flank : GCCAAGGGAGGATAGACATCATCTGCTACTCCCGCCATGTTGACGAGAATCATCAGAGCAATGGTAATACCACGAAAAACATCAAGTGAAGTCAGGCGCATAGCAGGAAATTTGTCTTTTGAAGATCTACACATTACTCCTGCTGTTGCAGACGAGCAAGGAAAGTTTCTAGACCAACATACAAGTTAAAATATCGTAAAGGATTAAGCAAACGAACCTTGGCTAGTAAGTACTGTTCTTGGCTGGAGTTTTGCGTCAATCAGTAGGTGTTTGACAGCAACAGCAAAATTTTGCGCCTCAAAAGCTTACCCCTTTTGGTTTTGAACCATTTTTACCTATTTTGAGGTTGAAGCAAATTCCCTAACCCTTGTTGTACAAGCTTTTGAAGGATTTTCGCCATGACACCCTTGACAAACCAATGCCCCAAAAGCTACTTTGATTTCAGGTTGACGCAACTGTACCTTGAAAACCAAATATATCAATGCTTCCAACTCCGGGCG # Right flank : CTCGTGCAATCAATTAAAATAGTTGTTTGTGCAATTATCAATTTGGAATTTTTTAATACCCATGCCAGTTAAAGTAGGAGATACTGCACCTGACTTCAGCTTACCTGCCCAAAACGACTCAACGGTAAGCTTGAGAGACTTTCGGGGCAAAAATGCTGTAGTTCTGTATTTTTATCCCAAAGACGATACACCAGGATGTACTGCTGAATCTTGCGCTTTTCGCGATCAGTATGAAGTGTTTAAAAACGCCGGCGCTGAAGTGATTGGTGTCAGTGGTGACTCTAGCGAGTCCCATCAAAAATTTGCTGCGAAGTACAATCTACAATTTACGCTCTTAAGTGACAAAGGCGACCAAGTACGGAAACTATACGGTGCAACCGCTGCCTTTGGTTTGTTCCCTGGACGGGTGACTTACGTTATCGATCAACAGGGAGTTGTGCAATATGTCTTTGATTCAATGTTTAATTTTCAAGGGCACGTTGAAGAAGCGTTGAAAACAT # Questionable array : NO Score: 8.68 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:-0.49, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTACAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 10 6180860-6181112 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018178.1 Calothrix sp. NIES-2100 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 6180860 37 100.0 38 ..................................... GCAATTATTGACCAATTGTCCTCATGGTCTGAATTTAA 6180935 37 100.0 34 ..................................... ACAGACGATTTGAGTGTGCACAACGGCTAGGCTA 6181006 37 100.0 33 ..................................... GTTGAATTTCAAGATATTTAAAGTACTCAGAAA 6181076 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 100.0 35 ATTGCAATTAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : TAACCAAGCTCAGAACCTCATTAACCAAGCTCAGAGCCTCATTAACCAAGCTCAGAACCTCATTAACCAAGCTCAGAGCCTCATTAACCAAGCTCAGAACCTCATTAACCAAGCTCAGAACCTCATTAACCAAGCTTAGATACAGGATGAAGGCGATCGCATCTGTTTAAACTACCTGCTGCCAAACTAAAATTGAACATATCGCCCGCAAAATCCCAATCCGCACCACAGTCTTCTTTGCTTGAGTTTTGCGCCAACCAGTAGGTGTTTAAAAAATGAAGCAAAATTTTACGCCCCAAAAGCTTACCCCTAGTGGTTTTGAACCCTCTTACACCTATGATGAGGTTGACGCAAACTCTCTAACCCTTGCTACACAAGCTTTTGAGCTTTTTTACCCAAGATACCTCTTGACAACTCAAGGACTGAAAAGCTACTTTAGTTGGAGATTGACGCAACTGCACCTTGAAAACCAAATATATCAACGCTTTCAACTCCGAGCC # Right flank : CAGTGCGACTCGTTCTAGAGTAAAAAATACTACCAAGTATATAGCTCTAGGTGAGAAAAATCCGGATGAAACCTGGAAAATCTCATAACTAATTCTCGGATGTAGGTATAGAATCCTACCCTGGAAAGGAAACAGTGACTCCCAACCTGTCCACACCGACTAGACTCGGAATTCTAGAGAGTGAAGCTGGAAACAGGACACAATCAGAGCTAAAAGCAGATATGGCACACTGGTGTTAATGGGGAGATGACAAGGATAAACAAGACCTAAAAAAGCGTCATAATCCCAAGCGGTAATCTGAAAAAAAACATACCGACTTGATGTTTTTATTCTCGCGGCAATATTGTTTCGTTAGCCGTATTCCTATGAGAAGAACATTGGCGAACTGGTCTGTCCTAAATCATCAAAAAATCCAGAATTGGAACGAGGAAAAATAATGATGGAGTCTAGAGAAAGGTCGAAACTCTAGTAGGTAAGACGAGATAAGTAAACCTCCACAT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 11 6183316-6184236 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018178.1 Calothrix sp. NIES-2100 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 6183316 37 100.0 43 ..................................... CCCATGACTAAGGAAATCGAAATCTTCAAAGCCGGTACTCACA 6183396 37 100.0 40 ..................................... ACTGTTTTTGTCAAGTATTTTCAGCCTCGATGTCCCAAGA 6183473 37 100.0 34 ..................................... GCTAAGATGAATACTACTCAATCTTGGCTTGGAT 6183544 37 100.0 39 ..................................... CTTCTGTAGAGATTCTAGGTACTGCCAACACTCGCCAAA 6183620 37 100.0 36 ..................................... GCCAGAAAAGGTTTGGATCGACTTGGCAAACTTCAG 6183693 37 97.3 36 ..................T.................. ATACGAAGGTTCCGAAGGTGAGCTAATGGCAACAAT 6183766 37 100.0 34 ..................................... GCATCTGGATTATTTACTCCGCGAGTTGTGACTA 6183837 37 100.0 33 ..................................... TAATTCTTTAACTATTCTGATTGCTTCGATGTT 6183907 37 100.0 36 ..................................... ATATGACTACATAAAGTTTGTTATTCAACCATACAT 6183980 37 100.0 36 ..................................... TCATGGTATTTCTGAAGGTCAGGATTGTCATTTAAA 6184053 37 97.3 36 ........................T............ CGATTGCCAAAGTGCGGAAATTAGTACAACTTTTTT 6184126 37 97.3 37 ........................T............ TATCTTCTAAAAACCACAATTTTAATGAATCAATAGA 6184200 37 97.3 0 ........................T............ | ========== ====== ====== ====== ===================================== =========================================== ================== 13 37 99.2 37 ATTGCAATTAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : AACATTTAAAGTGTTCAACCAACAACCTAAAATGAACCGTTACCAAGCCGAAACCCTAGTCAAAAAGGCATTTCCTCCAGTCCCCTACTCGGAAAATGATTTCGTCAATGTCAAAGGAGATTATTCTCCCTTCAACGGCAACCTGATTTATTGGAGTCAACGTCAATCCAAATTCTATGATGGTGCGACATCCAAAGCTTTGATTTCTCAACACCACAAATGTGGATTTTGTGGCTTAAGTTTTGTAGATGCTGAAAGAATTCACCTCCATCACATTGATGGTAACCATGACAATTGTCATCCTAAAAACCTTTTGGCTATACATGAATCTTGCCACGATTTAGTTCACTATCGCAAAGGCAAATAGCCTCAGATTTGTCGAAAGCTGGATGCACCGAAAGGCGCACGTCCAGATTGAAATGGGAGGTGCGGGGGATAATACCCCCCATCGACCCAACCGGGGCTAAAAAAATTAGTAAGGCTGTGTGGACTCAATACGA # Right flank : CATCATGCAAAACGCAAAAAGCTACCTTACCGTTATCCTAGTCAAATACAGTATGCCCAGAGCGATCGCACTTGGTTAAATTAATTTGACAAAGGGATGACACAAAGGCGACAAAGAGCGATCGCGGTTTTTCGTTTATTCTCAGAGATATGCCTATCCTGTTGAAATCGCAAATTTTCAGCAAAAATCGTGATAAAAATAAACCAAAAGCCACAAAAGATAATTTTTGCTCTGAGTATATTAAGTTTTAGCTTAAGTGCGATCGCTTGCACCTCTAAGCCAAAAAACTCTCAGCAGACGGAAAACCCAGGCCAACCCATCGTTGCACAAAACACAGCATCCCTGACCTCAGTCCCAACACCACAAGACAAAGCAATTCCTAGATACGAGCATATTTTTGTCATTGTCGAAGAAAATAAATCTTATAGCCAAATTATTGGCAGTTCCAATGCACCTATAATTAATCAACTAGCAAAAACCTATGGTTTGGCTAGTAACTT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 12 7624599-7623544 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018178.1 Calothrix sp. NIES-2100 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 7624598 37 100.0 35 ..................................... CTGAAATAGACAAACACATCCATTGATTCAGGAAT 7624526 37 100.0 38 ..................................... CAAAAATTACTTTTTGGGGCGTTCAAAGAGAAGTTTGC 7624451 37 100.0 36 ..................................... ATTCCCCCAATAAGTATCAAAATTGGTAATGTTGTT 7624378 37 100.0 33 ..................................... CCATCCAAAGTATTGTGGTGATTCACCACTAAG 7624308 37 100.0 35 ..................................... AAAAATTCACAGACTACGGAATTTTTGACGAATTA 7624236 37 100.0 34 ..................................... TTCATTAATGCCTAGTTCAGAAGCAAATTGCTTT 7624165 37 100.0 34 ..................................... ACATCGCCCGCGCTAATTCCACTCAAAGCTGCTA 7624094 37 100.0 36 ..................................... GTAGATAATTCTCAGAGTGCTGATATAGCAGCATAA 7624021 37 100.0 35 ..................................... CAGGTTAAACGTACCAAAATTCTAGGAAAATAAAT 7623949 37 100.0 35 ..................................... ACTGACTTTTCTATAGGCTTAAAAAAGCTTACGGG 7623877 37 100.0 38 ..................................... TATGGGTGGATTTGTAAAAGAAAGTAACGGTAATTATT 7623802 37 100.0 33 ..................................... AACAATTCTTCCAATTCTGGCAGGGAACTCTTT 7623732 37 100.0 44 ..................................... CAAGCCAAATACGGTAATGTACCGACAATGGTATTTGCCTCTAG 7623651 37 100.0 34 ..................................... CTTCGGCTTACCGGATTTGTAAGAATTCGCCTGC 7623580 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 15 37 100.0 36 ATTGCAATTAATTAAAATCCCTATTAGGGATTGAAAC # Left flank : ATTGAGCATAAATACATTAATGTTTGTACGGCTGGGCAGAAATAGAGTACCACCCCAAAATACCTTGACATTCATTCAAACATTACGTGACTTTCTTTGTGCAAGGTTGGTGAGTTTCGGCTACGCTCAACTACGGCAAAGCCGAACCACTGACTTTTTTTGGTAAAATTGTATCTATCGGCGTGACAGAGGCGATGTCTACAACAAGCCGCTTTACGCCCACGCTATCACAAGACTTTTGCCCTGCGTCTAGCGTCAACCAGTAGGTGTTTAAAAACAACAGTCAAATTTTGCGCCTCAAAAGCTTACTGCCTCTAGTTTTGAACCCTTTTTCAGAGAATATGAGGTTGACGCAAATTCTCTAACCCTTGCTATACAAGCATTTGCAGCTTTTTGCCTATGACACCCTTGACAACTCAATGTCCTAAAAGCTATTTTAATTTGAGGTTGACGCAACTGTACCTTGAAAACCAAATACAGCAAGCCTTCCAACTCCGGGC # Right flank : AGTGCGACTCGTTCTAGAGTAAAAAATACTACCAAGTATATAGCTCTAGGTGAGAAAAATCCGGATGAAACCTGGAAAATCTCATAACTAATTCTCGGATGTAGGTATAGAATCCTACCCTGGAAAGGAAACAGTGACTCCCAACCTGTCCACACCGACTAGACTCGGAATTCTAGAGAGTGAAGCTGGAAACAGGACACAATCAGAGCTAAAAGCAGATATGGCACACTGGTGTTAATGGGGAGATGACAAGGATAAACAAGACCTAAAAAAGCGTCATAATCCCAAGCGGTAATCTGAAAAAAAACATACCGACTTGATGTTTTTATTCTCGCGGCAATATTGTTTCGTTAGCCGTATTCCTATGAGAAGAACATTGGCGAACTGGTCTGTCCTAAATCATCAAAAAATCCAGAATTGGAACGAGGAAAAATAATGATGGAGTCTAGAGAAAGGTCGAAACTCTAGTAGGTAAGACGAGATAAGTAAACCTCCACATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAATTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 13 8773811-8773418 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018178.1 Calothrix sp. NIES-2100 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 8773810 38 97.4 35 ............T......................... TTGCTCAAATCTCTTCACTGCTTCATAAGTTTCTG 8773737 38 97.4 31 .............G........................ TATCTATATCGTGAACGAGCCAATATTCAAT 8773668 38 97.4 33 .............G........................ TATTAGGTATATAGTTTCTATTGCTAAAAATGT 8773597 38 100.0 33 ...................................... ATTTCATTCATATTTAACCTATTGAACTTCTAC 8773526 38 100.0 33 ...................................... ATTTCATTCATATTTAACCTATTGAACTTCTAC 8773455 38 97.4 0 .....................................C | ========== ====== ====== ====== ====================================== =================================== ================== 6 38 98.3 33 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAACT # Left flank : GGCGCAATCGGAAGTAATGCCGCAAGAGTTTGCTAAACTAACAGTACCAGTACTGTTAGTTGCGGGAGAGTATGACAAGATTATTCCCGCTGCAATGGGGCGGCAAGCCGCAGCGATGAATGATAATGTTGAATTTGCCATGCTTGCAAATACAGCTCATTTCCCAATGTTAGAAGATGCGTCCACTTACCTACAGCGGGTGCGGGAGTTTTTGCAACTTCCCACAACAGTTGATGAAAGTTGATGTCAAATCTGACTATTTTGTTTCTAGAATGCGCGGATGGGTAGGTGTTGAAAATGGGGTTTATACAAAAATGCCTGAGACTCCTCAACTGTAAGACTTTCAAAGATTAATTGCTGTTAAACCACCCGCGCGCCTTACACAGACTCACTTTCAGCGATTTTGGTTTTGCTTTTTCTCTATTGCTGATGTTATTATTTACCTATCCGCGCACCATAAATTTGACAACCTTATATTACTTGACTTTCAGGCTGCCGCA # Right flank : GCTCCTTAATTTTTTCCGTTCTGCAGGAACTTTACAGCAGTTTTCGCCTAGTTGAACCACACTCTCAGGGCACAGCCGTGCTCATACGTGTCAACTTAACGTGAAACCCTTACCAAGACGTGATGAGCGAATTCTCTCACTTAACATCATGATCCGCGTCACCCCACCCCGGCTTTGCTGACGCAAAACCTCCCCTCCCCGTAAACGGGGAGGGGATTGAGGGGTGGGGTAAAATGCCTGTGGGATAAGCCTTTTAACTTAAGTTGACACCAATGAGCCGTGCTGTGCCCCTACGGCAAATGTGGTCAATTTACCTGAAAATAGCTGTGTTTTGAATCATAAGTTGGTTCATCCCCAGAAATGGTGAAGCCATCGCCACACCTCCAAATAGTTGATAATTTAATTATCACAACCTTAATATCGTCCAGCCAGAACTCGTTCAGCACTCAAATCCAAGTTTGGGAAAGTAGGAGAGATGATGCGTTCGTGGTTTCGGAAAG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAACT # Alternate repeat : GTTGAAATTTCACGTAATCCCTATTAGGGATTGAAACT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //