Array 1 33984-32564 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGUP010000202.1 Bordetella pseudohinzii isolate Bordetella pseudohinzii 2-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 33983 36 100.0 30 .................................... ATGTTTATCGTGATCACGATTTTGTCGTGG 33917 36 100.0 29 .................................... GCGGTGGTTCTGCGCCGATTAACATTAAT 33852 36 100.0 30 .................................... AGTGATCTTCTTCGTAACATAACGCGCTAC 33786 36 100.0 30 .................................... ACTAGCGTTGTAGTTATGTTGCGTGATTGC 33720 36 100.0 30 .................................... CGCATCGACGGACCGCAGATCAGATCATCG 33654 36 100.0 30 .................................... AAGTCGAAGTACAGCATGTTGAGGGACTAG 33588 36 100.0 29 .................................... GTATGCCGTATTCGATGCGCCCCCAGCAG 33523 36 100.0 30 .................................... TCTTTCACGTCCTTTCCTTGAGAGAGTCCA 33457 36 100.0 30 .................................... GGTCGTCACGCCTTCCCGACCGCCGCTGTC 33391 36 100.0 30 .................................... AGTGGCGTTTCAGCTGTCATTCCCGTACCT 33325 36 100.0 30 .................................... ATCAGTCGCATGAAGCTGCCGCCGTACTGA 33259 36 100.0 30 .................................... GGGTGAGGGCGTAGAGGGGAATGTTCATGG 33193 36 100.0 30 .................................... ACGTGTTACGACGCGATTTCGCTTCCAATA 33127 36 100.0 30 .................................... TGGAACAAGAAGTGATCGCACCGCCGGAAG 33061 36 100.0 30 .................................... TATTTGGATTGGTGCAAGTTCTATCTGGAA 32995 36 100.0 30 .................................... TTGCCCGTCATGGACGTGACGGCGCCGTCG 32929 36 100.0 30 .................................... ATCCATCCGAATTCACTACGGGCCAAGCTG 32863 36 100.0 30 .................................... ATAGCGATGCAGGGACGGCGCGCGTTGACT 32797 36 97.2 30 ......................A............. GGCCGCTCCAGTACCACTCGTGACGAAACT 32731 36 100.0 30 .................................... TCAGATGCACTGCTACATCCGCCAGTCCGA 32665 36 100.0 30 .................................... CCTACGCGGGTTCGACTCCCGCAGCCCGCT 32599 36 91.7 0 ..............................T.A..A | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.5 30 ATTCTAGATCACTGGGAATTGCGCTCTAGCCGGAAC # Left flank : CGTTGGCCCAGGTCTACCTGGGAGAACGAAAAGACCTCGAACTGCCTCTGCCCGGCCTGCCAATTTCTCTGGCCAATAGCCTGAACGGCGACTGATTTTCGACATGCTTTCGGGATATCGACTAATGTGGATGCTGGTGATGTTCGACCTGCCCGTCCTTGAAAAAGCCGAACGCAAAGCCGCCTCGGCTTTTCGCAATACCCTGCTGGATCTAGGGTTCGAGATGAGCCAGTTCAGTGTTTACCTGCGGTTCTGCACCAGCCAGGCCCAGCTTGACACTTTGTGCAAATCGGTCGAACAATGCCTTCCGGAAGGCGGCAAGGTCCACGTACTCCAATTCACGGATAAACAGTACGAGCGCACGATCACCTATCAAGGAAAATCGCGCCAACCCTCGAAAAAAGCCCCGGATCAGTTCGATCTTTTCTGACAATGAGCACTCTTTTTTTACTCAGAGAATTGAATAACCCCCTGATAAATCAGGGGGTTATGGGAACAAC # Right flank : AAATTGGCAGACTACCCCACACGGCAGAACGTGAACCTCTTAACGCTCCATTAATCCAAGTCCTGGATCCTTGATTGTCATTGTGAGCGCAGGCGGAGTGGATGGGGTTGGATTACCGGTGTTTGTCAGTGTTTCCGGGCGTGTGTCCGTCCTGGGCGGCAAGCCATGCATAGCGTCGGCCCATTTTCCGTCCAGGTGATCGCCGTGGCGCTTGCCGCCGTCCTGGCCTGGCTGGCCGCGCGGCTGCTGTGGCGCAAGGACGGCACGGGCAAGCGCGCCGCCGCCGTGCTGCTCGACGCCCTGCTCATCGGCCTGCTGGCCGCCCGTGCGCTCTATGTGCTGCGCTGGTGGCCGGATTACAGCGCCGCGCCGCGGGCCATCGTGTCCGTCGGCGATGGCGGTTTTTATTGGTGGGCCGGTCTGCCGGCCGGCCTGGCTTATCTGGCCTGGCGCACGCGCGGGCTGCCGCCGCTGCGGCAAGCCGCGCTGGGCAGCGCGGC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGATCACTGGGAATTGCGCTCTAGCCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //