Array 1 37272-37494 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI272865.1 Leptotrichia sp. oral taxon 215 str. W9775 Scaffold453, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 37272 25 100.0 41 ......................... CAAACACATACACATGATATTAAGAAAGCTATGAGGTTTGA 37338 25 100.0 41 ......................... CAAACTTCCTGCTCTGATAAAAAGCTATCAATTAAGTTTGA 37404 25 100.0 41 ......................... CAAACTTATAATCTGCTCTTGACAAGTCAAACATTGTTTGA 37470 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================= ================== 4 25 100.0 41 GAGTGATGTAAATTCAGATAGTATT # Left flank : AAGAGATTTTAGAGTATATAGATTTAGTGTCAAAAATTTTTAAAAAAGAAATTTTTATACTAATTAATTTTCATATTTTTTTGGAAAAGAAAGATATTGTAGTATTATATAGAGAATGTTTTTATAAAAAAATAAAATTATTATTTGTAGAAAATCAAAAACCTGATATAATAAATAATGAAGAGAAATTATTTATTATAGATAATGATTTATGTGAGATAAATCTTTCGTAAGTCAAATATTATCTGGATTTCAGCGTTACGTAATGACGAAAATTATTCTCTCTTAAAAATAAATTTGAGGTTTGAGAGTGATGTAAATTCAGATAGTATTCAAACTAATTTTTAAGTCCTTCCTTTTTCTTTTAGGTTTGAGAGTGATGTAAATTCAGATAGTATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGAGTGATGTAAATTCAGATAGTATTCAAACTTGGTGATGGTCGTTAAACAACTCACACCTGTTTGAGAGTGATGTAAATTCAGATAGTATTCAAACTTCATTAGTAGGTTGTATCTCAGACCATCTGTTTGAGAGTGATGTAAATTCAGATAGTATTCAAACTTCCCAGTTACGGAATTAGCCCTTAATTTAGTTTGAGAGTGATGTAAATTCAGATAGTATTCAAACTGCAGGTGCAGGAGGAAATCTTTATTATTCGTTTGAGAGTGATGTAAATTCAGATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGAGTGATGTA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTGATGTAAATTCAGATAGTATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 38367-38600 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI272865.1 Leptotrichia sp. oral taxon 215 str. W9775 Scaffold453, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 38367 36 100.0 30 .................................... ATTAAGAGGTGTATTTATATGTATAAGAAC 38433 36 100.0 30 .................................... CAGTAATTTATCCAGCAAGGAAAAAACTGG 38499 36 100.0 30 .................................... AAAGATATTTAGACCTACACCTAAATATGC 38565 36 91.7 0 .................................NNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.9 30 GTTTGAGAGTGATGTAAATTCAGATAGTATTCAAAC # Left flank : TGTAAATTCAGATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGAGTGATGTAAATTCAGATAGTATTCAAACCACTCCATAGTCCTAAACTTGCTATAACGAGTTTGAGAGTGATGTAAATTCAGATAGTATTCAAACAACATTTTGTTAGTGAATATTGGTAAAGCAGTTTGAGAGTGATGTAAATTCAGATAGTATTCAAACAAATATCAGGCTTAAATTTTTGCAGTTCCTGTTTGAGAGTGATGTAAATTCAGATAGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGTGATGTAAATTCAGATAGTATTCAAACAAATATTTACAGAAATGTGGTATAATGGTA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGAGTGATGTAAATTCAGATAGTATTCAAACAATCAAAATAGCAAACAAGATTTCATTATTGTTTGAGAGTGATGTAAATTCAGATAGTATTCAAACAAAAGTTATGAACTATATTGTTATACTCGTGTTTGAGAGTGATGTAAATTCAGATAGTATTCAAACCTTGCCAACCAATTCCAACTCCTTTCATTAGTTTGAGAGTGATGTAAATTCAGATAGTATTCAAACTTTTTAATTCAAAATTATTTATAATCTAACGTTTGAGAGTGATGTAAATTCAGATAGTATTCAAACTCCAAAAAATCCATACAGTTTAAAGCTTGAGTTTGAGAGTGATGTAAATTCAGATAGTATTCAAACGCTCCGAATGTAGCATTAAGAAGTATTTTAGTTTGAGAGT # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTGATGTAAATTCAGATAGTATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 38760-39257 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI272865.1 Leptotrichia sp. oral taxon 215 str. W9775 Scaffold453, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 38760 36 100.0 30 .................................... AAAAGTTATGAACTATATTGTTATACTCGT 38826 36 100.0 30 .................................... CTTGCCAACCAATTCCAACTCCTTTCATTA 38892 36 100.0 30 .................................... TTTTTAATTCAAAATTATTTATAATCTAAC 38958 36 100.0 30 .................................... TCCAAAAAATCCATACAGTTTAAAGCTTGA 39024 36 100.0 30 .................................... GCTCCGAATGTAGCATTAAGAAGTATTTTA 39090 36 100.0 30 .................................... CTGTGCTGGCATTTTTTACCTCCTACTCCT 39156 36 100.0 31 .................................... AGACAAGATTAAAATCATAAATGCAGCTTTG 39222 35 83.3 0 ..........A.........A.A..-....AT.... | A [39251] ========== ====== ====== ====== ==================================== =============================== ================== 8 36 97.9 30 GTTTGAGAGTGATGTAAATTCAGATAGTATTCAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGTGATGTAAATTCAGATAGTATTCAAACAAATATTTACAGAAATGTGGTATAATGGTAGTTTGAGAGTGATGTAAATTCAGATAGTATTCAAACATTAAGAGGTGTATTTATATGTATAAGAACGTTTGAGAGTGATGTAAATTCAGATAGTATTCAAACCAGTAATTTATCCAGCAAGGAAAAAACTGGGTTTGAGAGTGATGTAAATTCAGATAGTATTCAAACAAAGATATTTAGACCTACACCTAAATATGCGTTTGAGAGTGATGTAAATTCAGATAGTATTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGAGTGATGTAAATTCAGATAGTATTCAAACAATCAAAATAGCAAACAAGATTTCATTATT # Right flank : CATAAACACTTTTATTCTAATTTTATATATTATTTTCTTTTTTCCAGCTAAGTGGTATAATATATAAAACACATCACAATAGGAGTTGAGATTGATGAAAACTATAAAATTTAACAATAAAAAACATTATAGTCCATTAGAAATTGTAATAATTATAGTATTAGGAATTATAATCTCTTTTCCATCTTTGGTTTTATTATCAATATTTTTAGTGTTTATGTTTGCTGTAAGTCCTTTAATTACAATATTCTCAATAATTTTTATTATATTTAAAATACTTCATATAAAAAATCAGTAAAAGATATTAGTTTTAAAGAAAATTTTTTAGGTTATTATCAAATAAGTAAAACTGAAATGACTACAGAGGGTTGGAGCAAATATACAAAATTGGAAAAGTGGTTGAAAACTAAAAAGAAAGTGAGAAAGAATGGCAGTAATATCAGAAAAAGAAATAGAATTCAATAAAGAAATTTCACACCATTAAGAGTAATTATGTTTCA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTGATGTAAATTCAGATAGTATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //