Array 1 61-881 **** Predicted by CRISPRDetect 2.4 *** >NZ_APHR01000086.1 Methylophaga lonarensis MPL Contig86, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61 29 100.0 32 ............................. AACTCCCTCCGAGTCCGGGTCTTGATTGGAAC 122 29 100.0 32 ............................. CTGAGCAATCAGCCAGCCCTTATCTGGATCAG 183 29 100.0 32 ............................. TAAATCTAGGAGACACAGACACGAGAACGCGC 244 29 100.0 32 ............................. CGGTGAGATTGGGAAAATTACGACCAGTCGAA 305 29 100.0 32 ............................. AATCATTCCGGTGAAATTATTGAAATTGTCGA 366 29 100.0 32 ............................. AGCAGCTACGCAATCGTCAGATCGATGAGGGG 427 29 100.0 32 ............................. CGCTCAATATCCCGCTGCCACGCGAGTAAGTC 488 29 100.0 32 ............................. AGTTGTGATTCAGCTGAAAAGTGAGTTACCAA 549 29 100.0 32 ............................. CAAAAAGTTGAAAAAAAGTGTTGACACTGTAA 610 29 100.0 32 ............................. CACTACAGCGGTAAAACCATCAGGTTTTTTCA 671 29 100.0 32 ............................. CGATTTCGCAGCGGCCAACAAAACATCCTCCA 732 29 100.0 32 ............................. GATTTTTACGACCGTGTGACTATAGCAGACGC 793 29 100.0 32 ............................. AAAACCGCAAATAATAGAGAGTATATGCCATG 854 28 82.8 0 .................-.....AGTT.. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.8 32 GTGTTCCCCACGACCGTGGGGATGAACCG # Left flank : TSWKCCCCACGACCGTGGGGATGAACCGCAGCTGGCAGCTTCCGAGACCTGCGGCCATTTG # Right flank : GTCCGGTGATTTTATATCAGGTACGACATACTGACGTTACTGTATTGATGATGAAGATGGGGCCCTCACTCCCGATGTGCCAGGCGGGCGGGTTTTTGTGGTTATTGGAGCACACCCCAACCACGCAGCCGAACCATAATTGTAGATTAAGCATGGACGGTGTGACAATGATCATTGATTACTATTCAGTGAGCACGGTGCAGTATCAAATTAGAACAGCGGCGGGAAGGTACTGGTGCAAATTTACGTTCTGCGTTTTTTGTTATGTTTAAAGGCTTTTTACTTAGGTAGCGATCATGAGCGGGAGATAAACAGATTAGTTTCGAGGAGCTTTTGTGGCATACGCTCTGACTGTTGATAGCTACTGGGGCGATTGTGGACAGTGTTATTAGAAAAAAGCCCCACTCATCGAGCGGGGCTTTTGCTTGTCGGCTTAGTTCATGCGCCGGTATTTGATGCGTTCCGGTTGATGGTCTTTGCCGTAACGCTTGCGGTAGTCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGACCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 44357-47435 **** Predicted by CRISPRDetect 2.4 *** >NZ_APHR01000054.1 Methylophaga lonarensis MPL Contig54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44357 29 100.0 32 ............................. AATATGGCTTTGCTGACACTATTGAAACCGCT 44418 29 100.0 32 ............................. AGATGGCGGGCAAAGAGCTCAAGCTGGCAGAC 44479 29 100.0 32 ............................. TATGCATTCTCAAATTTGGCTGGTCTTAACAT 44540 29 100.0 32 ............................. GGTCAGCTCACCAGCAGAATTTATCTGAGCAG 44601 29 100.0 32 ............................. TCAGGCGGTGTTGTAGCGGTACTGATGGTGAT 44662 29 100.0 32 ............................. TCACTGTTATAGAGAAACAGCCAGTGTATGAG 44723 29 100.0 32 ............................. CCTTTGAACTCTGAGCATCAGATCGTCTTTGT 44784 29 100.0 32 ............................. CATTAAGCGGCAGCTGATTATCTGCGATCCGC 44845 29 100.0 32 ............................. GTCAGATTGGCTTCCTGGCCTGGGCGCGTAGC 44906 29 100.0 32 ............................. CGGAATGCGTCCATTAAGATATTGATTTATTG 44967 29 100.0 32 ............................. CCAAATGGCAATAATGGCACCGTCATAACAAG 45028 29 100.0 32 ............................. GTGCCGCCGACTCAGGCGGAACCCACGTTGCA 45089 29 100.0 32 ............................. CCAGTTTGAGTGCTACGCACTCAACATCACCT 45150 29 100.0 32 ............................. GCTAGGCGTTACTGGGAGAGGTTAGCCAAGGT 45211 29 100.0 32 ............................. GGCTGGCCGATGCACTGGGGGATGATTTGCCC 45272 29 100.0 32 ............................. CTTTAAAAACTCTGCTTCCTGTTTCTGTTCTT 45333 29 100.0 32 ............................. TGCGCCACAGGCGAGCGTGATGTGCATCGTAA 45394 29 100.0 32 ............................. GCTTTGAGTAGTGATCCTGGTTCGCTGATGAA 45455 29 100.0 32 ............................. TTCGGCTCAAAAGTTGTGGCTGTGCCGATTGA 45516 29 100.0 32 ............................. GCAACGTCGCCTGAGAGAAAAACCGGAATCAA 45577 29 100.0 32 ............................. TAATTGGGTGATTTCTGATTCTCTGCGTGAGT 45638 29 100.0 32 ............................. GCACAGAACCGCGCACATCCTCATACCGTTCA 45699 29 100.0 32 ............................. AATCAGGAGTTAATGTAATGCCTGGCGTTACT 45760 29 100.0 32 ............................. CTGGCAGAACGCCTCCTGGATTTTTCGGTACT 45821 29 100.0 32 ............................. GCTCGTGCCTTTGTTGTAACTTGTTTCAGTCT 45882 29 100.0 32 ............................. CGGTCAGGGTGATCTGTTCGATGACTTTGACA 45943 29 100.0 32 ............................. CGTTGGTGATATTCAATAGGATAAATGAAATT 46004 29 100.0 32 ............................. GCGGGCCAGCGCCAGAGCAGGCGAAGCCAGAG 46065 29 100.0 32 ............................. AAATTGAACTAAGGTTTAGAGTTAATGACAAA 46126 29 100.0 32 ............................. GATTATTTGTTTTTGCCCAGCGAGTTGCCCAA 46187 29 100.0 32 ............................. AACCACCAGAACCAGAAATGGAGCCTGAGCAA 46248 29 100.0 32 ............................. CGCCTTATCAATCCGACTTGCACGAATATCAC 46309 29 100.0 32 ............................. AATGAACGGCAGTCAGCAGGCGAGTGGTTCAT 46370 29 100.0 32 ............................. AGAGTGCGAGCAACGTTTGTTCTGGAAAATGG 46431 29 100.0 32 ............................. CCGTCAGCATTATGGCTGAGCGTATTTATGAT 46492 29 100.0 32 ............................. GACTGCTGGAGAATCCAGAGGATTACGCATCA 46553 29 100.0 32 ............................. GTCAATCGCCAGGTGAACCCGAACGGCCTTGA 46614 29 100.0 32 ............................. GGCACCTATACAGGGGTAACCGACATGACGCA 46675 29 100.0 32 ............................. GTGTGCCATGAAGATGTGCGACCTGGACAGCT 46736 29 100.0 32 ............................. AGATTGGGGGTCTTGACTACGAAACTTACCAG 46797 29 100.0 32 ............................. CCACGCAGAATACCTGGCATTATTGAAAGACA 46858 29 100.0 32 ............................. CACATCAGACGGTACGATTGAATGAACACGAA 46919 29 100.0 32 ............................. AATCTACACTGAAATAATCGCCTGATGAATGT 46980 29 100.0 32 ............................. AAGAAGAGTTGTCCTCGTATCAATTAGGAACA 47041 29 100.0 32 ............................. TGTGGGGTTCATTTTATAGCCTTTGTGGGTTG 47102 29 100.0 32 ............................. TAATAACAGGAGCAGTAGTGCCAATAGGAATA 47163 29 100.0 32 ............................. GAACTGTTACAGGTAAATCACGAAACCCCTCC 47224 29 100.0 32 ............................. CTGTTGGTGTCGAAGTCCAGTAAGCACAGTTT 47285 29 100.0 32 ............................. CAGCCTGCAGCTTCGCCAGCACCTACCAGAAC 47346 29 100.0 32 ............................. CAGCTGGCAGCTTCCGAGACCTGCGGCCATTT 47407 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 51 29 100.0 32 GTGTTCCCCACGACCGTGGGGATGAACCG # Left flank : GTTCTGTCTGCCGGTGGCATTTCTCCACCGAAGCCACCCAAAGAGTCCGTCCCACCGGCTATACCACCGGCTGAGAACCTTGGTGATGAAGGACATCGGAGTGATTAATACATTATGGCAATGACGGTAGTGGTAACAGAAACCGTGCCAGATCGTTTGAGAGGACGGCTAGCTATCTGGCTGTTACAAGTGCGGGCAGGCGTCTACGTGGGTGATGTTTCCAAGAAGATCAGAGAAATGATCTGGCAGCAATGTGAGACGTATTGTGATGAAGGCAATATCGTTATGGCGTGGGCTACTAATACGGAGTCTGGTTTTGATTTTCAAACCATAGGGAAAAACAGACGCCATCCTGTAGAGCTGGACGGTTTGAGGCTTGTTTCGTTTCTACCAGCCGAAGACAATACTGATCTTTAACAAAAAGAAAAATTTGTTGCATTTCAATTGGTAGAAAATAAATAGCAAAAATTTATTTGGTAAATCAATTGGATGCAACAAGA # Right flank : AACTCCCTCCGAGTCCCTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGACCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //