Array 1 134260-134534 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMPK010000001.1 Bifidobacterium pseudocatenulatum strain D6t1_180914_B4 NODE_1_length_308390_cov_23.83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================================================== ================== 134260 27 100.0 63 ........................... ATCATAATCACGATCGTCACGATCGGAACGACGATCGTCACGATCGTAGTCACGGTCATCGCG 134350 27 100.0 30 ........................... ATCGCGATCGTAATCGCGGTCATCGTCACG Deletion [134407] 134407 27 100.0 72 ........................... ATCATAATCACGATCGTCACGATCGGAACGACGGTCATCACGACGGCCACGGCTGCCGCGACGGTCATCGCG 134506 27 77.8 0 .........CTC...G.........GG | G,G [134528,134530] ========== ====== ====== ====== =========================== ======================================================================== ================== 4 27 94.5 55 ATCGGAACGACGACGACGCGGACGATC # Left flank : TTGAGCTGCACGTCGATCTGCGCCCAACCGTTCTTCACACGATTACGTAGCGTGACCAGCCCGTTGTAGGCGCTGACGGCCCAAAGCACAATAAGTACAACGATGACGGCAATGATAATGCCAACGACCATGACGACTCCTTCGTTAATGGCTCTTCACACCATTCTTGCATGCGCCCAGGTACGTCATGACAAAACTCATGCCCCCGTGTCTCATTTTCATGCAATCTGCATGGAAACGCAAAAGTGCCCCGTACCTTCCGGTACAGGGCACTTCAGTCAGTCAGCTATGCTGCGAGGGATCCTTTTGAGGCGTCAGTCCTCAAAAGGATCAAAGTCGCGGCGGACGCGGCGGCGAGGACGCTCGGAACGCTCTTCGCGATCGGCACGGTACTCGTCGTAGTTCTCGTCGGCTGCGTAACGCGGATTGCGGTCGTCGCGGCGGCTGCTGCGACGACGGTCGGAACGACGATCATCACGATCGTAGTCACGGTCATCGCG # Right flank : GATTCCTGATCTTCGAAGCCTGGAATGGCCAGGGAGATCTTGCCGCGATCGTCAACGCCCTGCACGACTACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACGGCGTCGATACGCTCGCCGTTGGCCAGATTACGGATCTGGGAGATGTGCAACAGGCCGTCGGTGCCCGGGGTCAGGTTCACGAAGGCACCGAAGGAGGTGGTCTTCACAACCTTGCCGTTGTAGGTTTCGCCGGCTTCAGGAACGTGCGGGTTGGCGATCTGGTCGATGATCTGCTTGGCCTTTTCAGCGCCGTCGCCACCTTCGGAGGAGATGAACACGGTACCGTCATCTTCGATGGCGATCTCCGCACCGGTCTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGACCGATGACTTCGCCGATCTTGTCGACCGGAACGGTGGTGGTGATGATGCGCGGTGCGTACGGGCTCATCTCGGCCGGACCATCGATGCACTCGTTGATGAC # Questionable array : NO Score: 3.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-1.95, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAACGACGACGACGCGGACGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7164-6583 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMPK010000024.1 Bifidobacterium pseudocatenulatum strain D6t1_180914_B4 NODE_24_length_13732_cov_16.7339, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 7163 33 78.8 35 AA.AGA.A.....C................... GATGAGCGGGTATTCGCGGACGAGGTAGGTGAGGA A [7154] 7094 33 100.0 34 ................................. TGGTTCGACAAGTCAGACAGCCGTGTGCTCTTCG 7027 33 100.0 36 ................................. CACGTCCGGCGGTTCAATCCATTCGCGCATCAGAAG 6958 33 100.0 36 ................................. CAGCAGAGCCGTTTCGCCACGGCCTCAATCTCAACG 6889 33 100.0 35 ................................. GAGTCTGTGACGTCCGCTGCGAAGTCGGTGTCAAG 6821 33 100.0 37 ................................. ATGCATGTGGTGAGCGCGTCAATCAGCGTGTCATCGC 6751 33 100.0 36 ................................. TGGACGTGCGCAACATTACGCGCGATGATGGACTGA 6682 33 100.0 34 ................................. TTATGTTTGGGGGTATTGTTTTGTGCGAATACGC 6615 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 9 33 97.6 36 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : TGTCGCCCGTGATCGACTGCTACGACGGCATGCCGGTCGCCTGGACGATCGGCACGAGCCCGGACTCGGCGTTGGCCAACGGCATGCTCGCCGACGCGTGCTCCACGCTCAAGGACGGGGAGAAACCAATCATCCATTCCGACCGTGGCTGCCACTACCGGTGGCCGGAATGGATTCGCATCTGCAAGGAGCATGGTCTGACGCGTTCGACGGGCGCGAAGGGATGCGGTCCGGACAACGCGGCCGCGGAAGGGTTCTTCGGCCGGAGCAAGCAGGAGTTCTTCCACAAGCGCAGCTTCGCGGGCGTCTCTATGGACGGGTTCATCAACATGCTCGACGACTACATGGTCTGGTACCGGGACAGGAGGATCAAGACGGAGTCCGGACACGGGCATCATGGACCGTCGACGCAGACTCAGTCTTGTGGCATGATTGGTGGTGATGGAATCAACGATGAGTCCAACAAAACAGCACCGCCCCCATCGGCCTAACTTCTATTG # Right flank : CGGTGTCTGCATCGTTCCGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCTCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGGC # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 11715-9231 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMPK010000024.1 Bifidobacterium pseudocatenulatum strain D6t1_180914_B4 NODE_24_length_13732_cov_16.7339, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 11714 36 100.0 30 .................................... GAGTCACATTGACAAGGAGGCTTAGATATC 11648 36 100.0 30 .................................... AATACCGAAAACTTCTGCTAGCTGAGCTAT 11582 36 100.0 30 .................................... AACAGAATTGTCACCACAATCACCTCTGGT 11516 36 100.0 30 .................................... TATTCGAAGCTTGCTGGGATGAAGCAATCT 11450 36 100.0 30 .................................... GGAAGCCGGGAATCTCACCGGCATAATTCC 11384 36 100.0 30 .................................... CATGGATGTGCGGGCCGTAATGGAAGGTTT 11318 36 100.0 30 .................................... CGACGGTTCCGCCGGTTTCTCTGGCAGGCC 11252 36 100.0 30 .................................... GGCAATGGGCGATTACATCGGAGGAGATTA 11186 36 100.0 30 .................................... GTTCAATATTCGCGGACACTTTTACAGTTT 11120 36 100.0 30 .................................... AAGGTGGCATGGCCGACGTGCCCTGCACGC 11054 36 100.0 30 .................................... CGACCGTCGGCTGCCACGACGTGAAAGCAT 10988 36 100.0 31 .................................... TGCAGATCGAGGTCGAGGACGCCGAGGACGG 10921 36 100.0 30 .................................... CGACCAGATCCGGCAATGGGCGAAGACCCT 10855 36 100.0 30 .................................... CGGTCTGAGCCACAACCTTGATGGAAGTAC 10789 36 100.0 30 .................................... CGCCATCAACTAATTCCATGCCTTTCAGCA 10723 36 100.0 30 .................................... AGGGGCGAACGATGGCAGTGGGATGCATAC 10657 36 100.0 30 .................................... CGTCGGCTTTTCCACGGCGGTAGCATGATA 10591 36 100.0 30 .................................... CACAGCAAAGAAATACAATGGTCAGGCCAA 10525 36 100.0 30 .................................... TCTACGTGATCACGCAAAATCCGGACGCAA 10459 36 100.0 30 .................................... TATCCCACATCATCGGAATCTGCACGATCT 10393 36 100.0 36 .................................... AAACAGCACAAAACAACAACAACAACAACAATCTAA 10321 36 100.0 30 .................................... TCCTGGGTGGTGAGGTTGGATATGGTGTCG 10255 36 100.0 30 .................................... CAGTTCGCCGTCTTTAGGAATGGGGGCTAG 10189 36 100.0 30 .................................... ATGGGTCATTGTCCCAGCCGGCGATAATGT 10123 36 100.0 30 .................................... GCAAAAAGAGCAAAGACTTGTACGGTGAGC 10057 36 100.0 30 .................................... AATACGGAACATGCGTACCTCCATCGTATT 9991 36 100.0 30 .................................... GCTTTCATGCGTCTGAACTCCAAGCCACGC 9925 36 100.0 30 .................................... CATTCCGTTCTTTTACCGGCGAGGTTGTTG 9859 36 100.0 30 .................................... CTCAAATTCGCATTATGTTCATTATGGGGG 9793 36 100.0 29 .................................... TTCGTATGCGCTCTATGTGGTTGGCACGG 9728 36 100.0 30 .................................... CATCAGCCAGCAGATGCTTGCAAGCAGGGC 9662 36 100.0 30 .................................... GATGATGGCGGCTGCGAACTTCAGACGGCG 9596 36 100.0 30 .................................... ATGTCGAACCGGTATGTCCGAAGCATGGGT 9530 36 100.0 30 .................................... TTCGCCATCACGGTCTTCTGCGCCGCCTCG 9464 36 100.0 30 .................................... GACAGACGTGAATGTCCGACCTCGGCGCTT 9398 36 100.0 30 .................................... CGGCGGAGACAAGGAAACCGTCAACATCGC 9332 36 97.2 30 .......................T............ CAGGAGAAGCAGCATATCGCTGGCACTACT 9266 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 38 36 99.9 30 GTTTCAGATGCCTGTCAGATCAAAGACTTAGACCAC # Left flank : ATTGCGCAGGAGTACTAGATTATGATGCTTTGTTTCAAAAGGCTGCAGTTAAGAAGTTAAATGACGGATTTAATCCTGAAGAATTGAGTAGATTATTGTTGTTGCAAACTGAGATAAAGTCGATCATTCAAGAAGAAATATGGAGAGAGAATTTGCCTCTGAGTATTCTTGATGAAGCTGATATAAAGTCAATGATAGCAATGGCTAAACCGCGTGTTGATACCAGTTCTCTGGGTTCTCTTTATGATAAAATTCAACTGGTTGTTGATACTGCCGGCGCTCTTGCCGAGGGCAGGATGCTTGTGATGCTTCATATAACTCAATATTGTGATAATGGCCAATTACTTTATTTGCATCGAGAATTATTAAGACACCATATGCAGCTTCTGGACCTGGAATGCTGCGACAAAAAAGTCCTTTTGACAGAGGGAAGAAGTCGGTATATCGATGGAGATTATGTTCAGTTCTCATAGAACGTTCAGGATTCTCCAAGGCTATCG # Right flank : CGGAGGGAAAGTGGATGTGACCTTGACAGAGTTTGTGCTTGAGGATCTTGTGCCAGTCGGCGAACTCAGTAATGGACGCACCGCTACGGTGCTGTCTAAGGCCGACCGTGCGCCGGTCCTCGTCGTCAAACGGAACGCTGTCCTACGTGCTCATGGGTATCAACGATTATCAGAATTTTCTCGACCGTCTTAGGGGCGAAGAGGACGTTATCCATGCGCAATGTGTTTTGTTAAATTGAAGTAGTCCAAAATGGCGTGTCAATCCAGTCCGAACGAGGTGATGACGTTTTCTTGGACTCCCCGACCGGGAGGAGAACCCCCTTATGGCGAAGTACAGCAGGGAGCAGCGTGACAGGGCCGTGGACCTGTACGTCAAATACGAGCGCTGCGCCCGCCGACGTGATCCGCGAGCTCGGCTATCCCAGCAAGGGCGCGTTGCTGTCGTGGTACGCGGACCGGCTCGAGGAGGAGCGCACCGGCGTCCCCTCTAGGCGCGGGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAAAGACTTAGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //