Array 1 2224-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHE01000012.1 Rothia aeria strain C6B contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2223 29 100.0 32 ............................. GTACACGTGATATTCACACCACAGCCACGGAT 2162 29 100.0 32 ............................. CTACACGCGGCACATGCGCCCGCCCCATCATC 2101 29 100.0 32 ............................. TTTGCGGCCTTGGCTTGCTGTCGCTGTGCTTT 2040 29 96.6 32 ............................T ATTCGGAGATTACGGGGGGCGACCAGCTAAGC 1979 29 100.0 32 ............................. CCATACGAGACATCCGCGACCCCAAACACAAC 1918 29 96.6 32 ............................T GGGTAGAGGCAATACAACAGGCCCCACACTCG 1857 29 100.0 32 ............................. GTTGAGTGGGATGGTTATCAGAACCGTTCCGT 1796 29 100.0 32 ............................. AACGATACCTTTAAAGATAGGGTCGTTGGCGG 1735 29 96.6 32 ............................T CGGCCTTCTTCAAAACCCCGCCGGTTGCGTTG 1674 29 100.0 32 ............................. TTCCACATTGATAAGCTGCCAACGATTGACCT 1613 29 96.6 32 ............................T ACGAGCTTGACACGCTAGGGTTCGTATTCGGA 1552 29 100.0 32 ............................. TCCTGACAAACCACCAGCAGGTTCTTCAACCG 1491 29 100.0 32 ............................. GCACCCCGTGAAAATGCACTTAGTGCCCTTAA 1430 29 100.0 32 ............................. GGAAAGTCGCCGTACTCGCATTGGGGTACGGC 1369 29 100.0 32 ............................. GTGTCTAGCTCTTCCAGTGCGCCGGTATGCAA 1308 29 96.6 32 ............................T AGAGGGCGAAAATATTATGCTTGCACTAGAAA 1247 29 100.0 32 ............................. TTCGGACTGTGGGAGGATGGTACCACCTTCAT 1186 29 100.0 32 ............................. GAAAGCGCGACCCACAGCCCAGTCCCAGACGG 1125 29 100.0 32 ............................. GACAGAGCAAATGAATCTTGCTGAAACATTAG 1064 29 96.6 32 ............................T ACGTGGGCGTGCGCGTGGTATGTGTGACGTGG 1003 29 100.0 32 ............................. ACGCCCGCTACACCAAATACCCCGCGACATGG 942 29 100.0 32 ............................. GTCTGCTTCTCTCATGCCCCTCAGTGTACCGC 881 29 100.0 32 ............................. CGGTTAGCCGAAACTTGCGTGTACGGTAGCTC 820 29 100.0 32 ............................. GTCTGCTTCTCTCATGCCCCTCAGTGTACCGC 759 29 96.6 32 ............................T TTACCGTGACTGACGGTATGCGAATTGCTCAG 698 29 100.0 32 ............................. GTGTACCCCTTTCGTCATAGCAAGGTTTCGGT 637 29 96.6 32 ............................T GGGAACAGGCCAACAAACGCCTATCAAGGCAG 576 29 96.6 32 ............................T GCGATAGTCCCCACATTTGTAGGAAGTCCATT 515 29 100.0 32 ............................. TTCAACGTAGGGATGAACAGGCGGCCCGAACC 454 29 100.0 32 ............................. AATTCATAGCGGCCCTGCGGCTGGCAAACGAA 393 29 96.6 32 ............................T ACCACATCGTGAAACAGCTCGACAAAGAAGAC 332 29 100.0 32 ............................. GAACAGGGGTGTGAGCATCACTCACACCCCAT 271 29 96.6 32 ............................T ATGCACCCACTAGACCCATTCGTAACCAAAAC 210 29 100.0 32 ............................. AGCCGCCACCCGCTTCACAAGGCTCTCTAGTG 149 29 100.0 32 ............................. AAAGCAATGCCCCTCAAGCACACATGGCCCGC 88 29 100.0 32 ............................. TAGGTGATGGAATTACCGGAAATCGTGCCGCC 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 37 29 98.8 32 GTGCTCCCCACACACGTGGGGATGAGCCG # Left flank : TTTGGGATGAGAAAACTGGGGGTGCAATTGCCCGATATAATTTTGAGACTGGTGGAGAAACATGATCGTGGTGGTTTTATCAGCTTGCCCTGTTGGTTTACGTGGGGATTTAACGCGCTGGCTTCTTGAAATTAGTGCTGGGGTATTCGTAGGAAAGGTAAGCGCCCGCGTGCGCGAGCACCTGTGGAACCGTATTACTACAACGTGTAGTGATGGTAGTGCGCTTATGGTGTATTCGGCGGATAATGAGCAGCGTCTTGAGTTTAAAGTGCATCGTCACCCGTGGGAGCCTGTCGACTTTGAAGGGGTAAAACTTATGATGCGCCCGTCTGCCCCGAAAGAGGATCTAGGGCCACGAAAAGGGTGGAGCAAAGCTAGCAGGTATAGGCGCGCTTCCCGACGGCGATAAGCCCAAAAATCGTGTAGGGTTAATACTGGCTTTGGGCTCCAAACTAATTCTAAAACTTGGTGTGTGGGGATAAAATCCCATGTCAGCAAGT # Right flank : C # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACACACGTGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACACGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 71784-68883 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHE01000024.1 Rothia aeria strain C6B contig_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 71783 29 100.0 32 ............................. ACCTGAACGATTCAAACGCCTTTATCGACGAA 71722 29 100.0 32 ............................. AGACCGCGCCGGGGGCAACGCCGTCTCAAGCA 71661 29 100.0 32 ............................. AACCCGGTGCCCCACGTGGTGCCCGGGTTGTT 71600 29 96.6 32 .................A........... AACACGTCAGCAAGAACCCTATCCACCGGGCC 71539 29 100.0 32 ............................. CCTCTAAATCAGTAGACTTAAACGGGCCTTCT 71478 29 100.0 32 ............................. TTTAGCTACATGGAGGCCGCCTCCGCTACCAC 71417 29 96.6 32 ............................T AACTAGGCTCAAACGTCGCCGCCCGGCTTTCC 71356 29 100.0 32 ............................. ACTCACAAGTTTTTCCCAGTTATTCTGGATGC 71295 29 100.0 32 ............................. GCGGGCGGCTCCTAGCCGAAATCGTAGATGCG 71234 29 100.0 32 ............................. ACAGCTGACCCGTGGGCTGCGAATGGTGAAAT 71173 29 100.0 32 ............................. GCGCAGCTGGAAGAGATGAGCACCACCCTAGC 71112 29 100.0 32 ............................. ACCGGTCAATGACCTATATAGCGGTCGCCGGG 71051 29 100.0 32 ............................. CCATAGGCAACCAGCAGCGGCATGACAACCAG 70990 29 100.0 33 ............................. CATATTCTTTGCGGCGACATCAGCCGGGGTAAG TA [70966] 70926 29 100.0 32 ............................. GGCTGATCGCCGCGCATGCGCCGGTATAGGGA 70865 29 100.0 32 ............................. GGAAATTCGCGGGCTACCGCACAATGGTGTAC 70804 29 100.0 32 ............................. GCTTGATTGAGCTGATTTACCGTGCGGGCCGC 70743 29 100.0 32 ............................. TGCAGTTTCAGCTGACATGCACGGGCGTGCAA 70682 29 100.0 32 ............................. CAATGGCGCAAAAACCCGGGATAGTATTCACA 70621 29 96.6 32 ............................T AGCGTCAGCCATGCTTTCATCGTCCTTTCCCT 70560 29 100.0 32 ............................. CGCGTGTCACGCACCGCAAATGCGGCGGACAC 70499 29 100.0 32 ............................. TGGGAGAGCTTGGCGCGCTCTTTGCTTCGTCT 70438 29 96.6 32 ............................T ACACCGGTTTTTTCGGGCACGGGGGTGCTGTT 70377 29 100.0 32 ............................. AACGCGCTAAGCCACCTAATGGCAACGTCCCA 70316 29 100.0 32 ............................. GATCATCGACACGGCCCAATATTTATAGGCTC 70255 29 100.0 32 ............................. CACCCCGAGGCTATGTGGCGCAAAACGGCGCT 70194 29 100.0 32 ............................. ACCAAACCGAACGCATGCTAGCACTACCCGAG 70133 29 100.0 32 ............................. AGCTGCGTGAGCACGCCGCATACATAGAGGGA 70072 29 100.0 32 ............................. AAATGTCACCTGACCGTTTCGGGCGCCGCGTT 70011 29 100.0 32 ............................. ACCACCAATGACGGTAATCTGCTGCTAGCGAC 69950 29 100.0 32 ............................. GTGGATATGAATTCCCCATTTACTTCTAAGCG 69889 29 100.0 32 ............................. ATAACGGAAGAATTTACCGAGCGTGTCAATCG 69828 29 100.0 32 ............................. GTGTTTCCTACTTGTTTTAGGAGTTGCCGCGC 69767 29 100.0 32 ............................. TAGGCGACCCCCAGGTCATCATCGCCGCCGCC 69706 29 100.0 32 ............................. CTCAGCAGAGGCGAACGCATCACCCTCCAACT 69645 29 100.0 32 ............................. CGCTCGCTGGGGCTATCCCGTCGGTGGCTCCT 69584 29 100.0 32 ............................. GATGGGCTGCCTACTATTTGGGTGCAGGGGAA 69523 29 100.0 32 ............................. GATGACTTACGATCCTGGGACGGGAGAAGCCA 69462 29 100.0 32 ............................. GCCAGCTTGGGCATTGAGTTCCACTGCTACGC 69401 29 100.0 32 ............................. ATTACTTTTGAGGGCATGATGGAGGCCGCTGC 69340 29 96.6 32 ............................T GTTCAGGTTGTTGGTGATGGGCGTGCCACACA 69279 29 100.0 32 ............................. AATTGGACGAAGCCCGGCCCGTGTTCTTTCAG 69218 29 100.0 32 ............................. CCTCTAACACCCATTCCTCACCTGCCAGCCAC 69157 29 100.0 32 ............................. TACGGTAAAAATTGGGACGCTGTTATTATCTG 69096 29 96.6 33 ............................A GAGTGCTCAAGCCCGGCGGTGATGCAAAAAGTC 69034 29 100.0 32 ............................. ATGCTCTGCGAGCTCCCGCTGGGTTTTCCCCT 68973 29 93.1 30 ......G.................G.... CAGAACAGTCGCAACCGCACGGAAATAATC TG [68946] 68912 29 75.9 0 ..TT.T........T....A...A.A... | A [68900] ========== ====== ====== ====== ============================= ================================= ================== 48 29 98.9 32 GTGCTCCCCACACACGTGGGGATGAGCCG # Left flank : CACGTGGGGATGAGCCTACGGCCTCAATATTCTGCGGCGTCACTCCGT # Right flank : ACGTTTACTAGGGTATGTACCCTGCGGTTTTTGCGTTCCCCACATATAGACAGTCCGAGCGACTGCTGGCTGGGTATGATGTAGCTCCTCGTATTTTTCTATTCCTTACCTCACTGGTTTTAATAAAATATTTTGCAGATTCCGCCCTCAGCATGTGCTGTGCACCTGCGGGGAGGGGGGTCTATACTCTACAGTTAATAGAGAAGGCTCCTGATCGTTCCCTGCACCCGTAGGGTCTGCTAGAAAACGGCTTGCCTGCCCGAAATTTTTTTGGGTGGGTTGGCCGCTTTCTTTTATTTAATTTTCTTTTGCTATGTTTTCTAACCGTCAGCTTCGCGTCTACTGTTTTTTCATGGGCTGCGGTGATAAAAGTAATTTTTTGTGTATTTTCGGTATTCGGTTTGTAAAACCCTGGGAGTTCGCTAAAAATTATGGGTAGAGCATTATTGAGGATGCTTTTGGATGCGCGCCCTGTTTCTTCCGGTTAAGAGTGGTCTTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACACACGTGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA //