Array 1 1425833-1424526 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015409.2 Akkermansia muciniphila strain YL44 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1425832 33 100.0 34 ................................. TTAATTTGCTGAGCACGACGGAGGTGACTTCTTA 1425765 33 100.0 34 ................................. ACTTCCTGGGACAGGCAGATCACGGGGATGCTCG 1425698 33 100.0 35 ................................. GATTTTTTGTGTAACAATGTAATTGTGGTCATCAT 1425630 33 100.0 34 ................................. ATCACCACACCAACTTTCTATGCCGGATTAACTC 1425563 33 100.0 34 ................................. GTTGTTGCGGTCGGCCACATCATCCCCGGCATCC 1425496 33 100.0 35 ................................. AGGGGACGGAGCGTTGTTCCACGGAGTTTCCCCTT 1425428 33 100.0 34 ................................. TTGGACAGGCTCATGTCAATAGTCCTCCATGTTG 1425361 33 100.0 34 ................................. TTGAGGGTTTGAATGTTGATTTTGGCGGGGATCC 1425294 33 100.0 34 ................................. TTCTCGGATATATCGTCTTTGATACCCGCACACA 1425227 33 100.0 34 ................................. CACGGCATTTGCCGCATAATGTAATCTTTGCACA 1425160 33 100.0 34 ................................. GGCTTGGAGCCTCCGCTTCCCATTATCGCCGATG 1425093 33 100.0 34 ................................. CCTCTCTTTTTAGGCGGAAAGGCCACGAACAGCG 1425026 33 100.0 34 ................................. TCCTACCGTATGGAGACAGTGGAATCGGAATCCG 1424959 33 100.0 34 ................................. CGTGTCCTGGTAGGTCACCGGAAGCGTGTCAAAA 1424892 33 100.0 34 ................................. CGAGTATGCCTCCACCAGCGCCCGCGAAAAGATG 1424825 33 100.0 34 ................................. TCGAATGTCCGGGACACAGCCCGCAACGGATATG 1424758 33 100.0 33 ................................. TCTTTGTTGAGCGGGTACCATGAGCCTGTGCTG 1424692 33 100.0 34 ................................. CTCGAACGTGCATCCGTAATTGGCAAGGCACCAG 1424625 33 100.0 34 ................................. CAGGTGCGGGTGCAGAAAGATACGGAGGGCGCCG 1424558 33 97.0 0 ..........................C...... | ========== ====== ====== ====== ================================= =================================== ================== 20 33 99.8 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGCCTCCTGCTCAATTGGTTGACATTAGGAATAAGCTGCTTAAGATTATTGATAGCGAGAGTGACAGCCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTTCGGTCCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGGGAATAGAAGATTGACAGATAAATACTCAGAAAGAGCAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGCAATGTATAAGGTCGGGCGCA # Right flank : ATGACGAGTGCAAGCTTCGAGAAGATGCCTCCCGCCGTACTCTCCAGGGAGTACGTAACTTATCTGGAAAAGAAAAAGCTCTTCGAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCCTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGCGGTTCGGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGTTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATATGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1434789-1434304 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015409.2 Akkermansia muciniphila strain YL44 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 1434788 31 100.0 34 ............................... TTACAAAACTGTTTTATGGATACAAAAATATATA 1434723 31 100.0 34 ............................... CTTTACAACCCTTATAGGTTATTATTTCCCTATG 1434658 31 100.0 33 ............................... GGCATTCAGGCAGTCGGACGGTTCAACTCCGGA 1434594 31 100.0 34 ............................... GGCTAAGTGTTGAGGGTTCCCGTCAACCAGCCGG 1434529 31 100.0 34 ............................... TGGAGGGAGTGAGTATGAAAGGGAAGGATTTGAG 1434464 31 100.0 34 ............................... GACCAACAACGTACCCGGCACGTGGTGCATCGGC 1434399 31 100.0 34 ............................... CTTTTTCCGGCTCCTTTCCGCAATGCGCATCAGG 1434334 31 90.3 0 ..........................T.G.T | ========== ====== ====== ====== =============================== ================================== ================== 8 31 98.8 34 GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Left flank : CGCCGTGAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTTTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCTATCCCGGGGCTCCTCTTCTTTTGTGGAAAAGAGAATAAAACGGTTTCCGGGGAGAGGCCTACAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTTCCGCATCGTGCACAGGCCTTGGTTGCCGGAGATGCAGGCTTTTTAACGCATGAAAAGCTTCTCTCCCGGTCTTCCTTCCGCCGACCCCAAGCTCACAGGAAATTTCCGGAATACCGGCGATTTTCGTAATCCGTTGGGGTTCTGATCTTGACAACTATCATCTCTTTTTAAGGCCTGGAGTCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACGCCCGTTGCACTGTTGATAATCAGTGCCATAGCCGCCCCGG # Right flank : GTCGTAGATTGAACGGCCTAATATCCCTAGAACGAGAAGGAGCATTTGGCTATAACGCTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTCGTGAAAAGAAACAGCTCAGAAGCCTTCAATCATTTCCGGGGTTAATCCCGGTAGATCATATTTCTTTACAATATTTCCATCCTCGGAGATTTCAATGGAGTGGTGGACTTTCGCAGAAGAGTATTGACCACTTTTACAGTTATGCTCCCACCAAATGACTTTTTGAATAGACATGCTGCCTTCCGGTCGAGCAGAGGAGGCGTCTCCTTCAAACATCTGAGGAAGCACTTGTTTGAAAATGGAGGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGTGGATTGATTGCTCCAAAGAAGACATAGGTTCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTGCTGCCGTCTCCGTCATTGCTGACACTTTTCGTAAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //