Array 1 2753-1464 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLXO01000019.1 Rhodothalassium salexigens DSM 2132 Ga0310481_119, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2752 36 100.0 30 .................................... GGCCTGAACGACAAAGCCGATCCGGAGCTT 2686 36 100.0 30 .................................... AGACCGAACCAACGGCAGGAGTAGCAGCAT 2620 36 100.0 30 .................................... GCCCTCCGGCGGCGCCAGCGACCGAGGGGG 2554 36 100.0 30 .................................... TGCGTGTGCTCGTCATATTCGTGGCGGATT 2488 36 100.0 30 .................................... TAGTTGTGTCGCCTGCCTGGCCTAGCCCGG 2422 36 100.0 30 .................................... CACCAGGCCAATGGCGGTGAGCACACCGGG 2356 36 100.0 30 .................................... GAAATACTTGGCGGCCAACTCGTCGGCGCA 2290 36 100.0 30 .................................... CGATGGTCGGAAAGACGTGTTGCGCGAGGG 2224 36 100.0 30 .................................... GACACGGTGAACCGGGTCACGTCCGAGCGC 2158 36 100.0 30 .................................... TCAACAAATTTCCTCATACCGCAGCAAATT 2092 36 100.0 30 .................................... TGTTTGCTCTTGGTGACGTTCAATATACGC 2026 36 100.0 30 .................................... CGCATCGAGCAAGGCCCGCCTGTTCGGGTC 1960 36 100.0 30 .................................... GTCGGCCAGATAGTCCAGCTGCTCGAAGCG 1894 36 100.0 29 .................................... TGTGGCCGCGGACTCTCGCAGTTGGTCGC 1829 36 100.0 30 .................................... ACAGGCGGTGAAAGCCGCGCCGGCGGCGGG 1763 36 100.0 30 .................................... GCCGACACCGACCGGCCGTCGGCGCGCGCC 1697 36 100.0 30 .................................... CGGGGCGTTGTCGATGTCATCCTGGGGCAC 1631 36 100.0 30 .................................... GAAAAAGCTGCGCGAAGCCTTTGCGACGGC 1565 36 100.0 30 .................................... CCGGCATTGGCGCAAGCCTTGGCGGGCGAT 1499 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 AGGCTAGCCGATTTGGGATCGAGGGCCAACCGCAAC # Left flank : TCCAATTGGTTCGGGGCGCTTCGCCCTGAACCCATTGGTCGAATGAACGGCATTGGGGGGCACCTCAAGAACCCGAGGGCAGCACAAGGTAATGTCTACGATATTGAGCGGGTATCGGATGATGTGGCTCTATGTGATGTTCGACCTGCCGGTTTTGACCCCTGACGAACGCCGTCGGGCGACCCGGTTTCGCAAGACTTTGCTCGATTGCGGTTTTGAGATGGCGCAATTCTCGGTTTACTTGCGCTTCTGCGATAGTAAGGAAACTGCCGAAACTCATATCCGCAAGGTGCAGTCAGTCCTGCCGCCTGCGGGTTGTGTCCACATCATCACTATTACCGACAAACAGTATGGAAACGCACGGATCTTCCAAGGAACGATGCAGAAACGCCCCCCAGAAAACCCGGATCAATTGGTGCTTTTGTGATCAATCGGGGTTGTTTTTTGGCGTTCAGAAAAAAAGAAAAAGCCCTGAAAAACAGGGCTTTAGGTGAGGATCT # Right flank : GTTAGAATCACGGCTAAGAAAGGAAAGCCCCATATCATTTCTTAGTGCGCCGGCCAAGGAAAGGGGCCTTTTTCAGACATGGCGTTATCACCGGAGCCATCACGGTTGGGGCAGCGCGTGGCCATTTCGACCGCGGGTGAGGGCGCAGAGGCGTTCGTGCCCCCTCCCTTGCCGCCGGTGCCGTCTGTCAGGATGGACCGGCTCTACCGTCCACTCGAGCGCGCAAACCGCGCGATCGGACGGCTCGATGGCGTGACGTCCATCCTGCCCGACACCCCGCTTTTCCTTCAAATGTACGTTCGAAAAGAGGCGCTGCTTTCGTCGCAGATCGAGAGTACACAGTCATCGCTCTCCGACCTGCTGCAGCAGGTCCTTGAGAACGGCGACTGGGAGGCATGGCTGGAGTTTTTCCTCGACGGTATCGCCGAGACGTCTCTGCAGGCATCCGAGGCGGCGCGCGAGATTCTTGCGCTTTTCGAAGCTGATCGGCACCGGATCGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGCTAGCCGATTTGGGATCGAGGGCCAACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 403028-400315 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLXO01000003.1 Rhodothalassium salexigens DSM 2132 Ga0310481_103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 403027 29 100.0 32 ............................. GCGTCGCCGCCGCCGCCGACTCGGTCAGCCTC 402966 29 100.0 32 ............................. TCTCGGGCATCCTTCGCGATCAAAGTGTTGCC 402905 29 100.0 32 ............................. CGAGGCAAATATCGCGGCGCTGGCACGCGACT 402844 29 100.0 32 ............................. CTATAAAGAAAAGAAAACGAACACGTGAAAGA 402783 29 100.0 32 ............................. CCGCTTCTCGGCCCGAAATTTCGAGAGCAACC 402722 29 100.0 32 ............................. GTGTATAACCTGGCCTGGTCTCGGCCCAAGCC 402661 29 100.0 32 ............................. GCAATTGCGACGGCGGTGATCGGGGGCGTCAT 402600 29 100.0 32 ............................. GCGACATCTATGCCGCGATCCTGGAGATCTCG 402539 29 100.0 32 ............................. GCGCATTCGGCCTGGTCGACGACACCACCGAG 402478 29 100.0 32 ............................. GAGCGGCGCGGGCTGAAAACCGAGATCTATGC 402417 29 100.0 32 ............................. GAGCGGCGCGGGCTGAAAACCGAGATCTATGC 402356 29 100.0 32 ............................. TCATGGGCATCCTGCGCGACCAATGTGTTGCC 402295 29 100.0 32 ............................. TGATCCGTCCATGATCGACAATCAGTCAGATT 402234 29 100.0 32 ............................. TGCCAACGCGGTATGTGCTGACCGTGTTTCGT 402173 29 100.0 32 ............................. ACCCACGGCAACGCGCGAATAGCGAGTGCTGG 402112 29 100.0 32 ............................. GCCGGCACAACTGACCACGCGCTCGACTGGTC 402051 29 100.0 32 ............................. GGCGCCTATGTGGCGCCGCCGGCCGAGGATGA 401990 29 100.0 32 ............................. GGGGCGACGTGCAGCCGCCAGAGATCGAGGGG 401929 29 100.0 32 ............................. GCGTTTCGCAACGGAAATTGACGCCGGCACAG 401868 29 100.0 32 ............................. ATCAACCGGCAGGATCGGGAGTTGTGGGAAGC 401807 29 100.0 32 ............................. TCTGGGACATGATGTCCGCCAGCGGCGACCTT 401746 29 100.0 32 ............................. GCACGGGTTCGAGAGGCAGATCATCAAACCCG 401685 29 100.0 32 ............................. GGGGCTTTTTTATGTCTGCGAAGTCGATTGCG 401624 29 100.0 32 ............................. CCGTCCAAAAAGACCGAGGCGAAGATGCGCCA 401563 29 100.0 32 ............................. ACCGCCACGCCCCGCGCGGCGGTGACGGCTGA 401502 29 100.0 32 ............................. TAAAATCGCCGGGCCAATCTTTGACGATATCG 401441 29 100.0 32 ............................. GGTCGACGGCGCGTGCGTTGGCAATCGGAGGA 401380 29 100.0 32 ............................. GAATGGCGCGCTTATACATTAGACGGAGTCTA 401319 29 100.0 32 ............................. CGCAGGTCCTGGCTGTTATCCGTAAAATCCAG 401258 29 100.0 32 ............................. ATTACCCGCTGGCGCGCGCCCACCTCTCCGAA 401197 29 100.0 32 ............................. GCCGCCAGCGGGGACCTTTTGCGACCGCTGAT 401136 29 100.0 32 ............................. GCTTCGACGGCTAAAAGGGGGTCGGGATGGTC 401075 29 100.0 32 ............................. GTTTCTTTGCTCGGCTTTTCGATCTTGCCGTT 401014 29 100.0 32 ............................. GCAATACCTGCCAGAATAAGCGGACTCATCGC 400953 29 100.0 32 ............................. ACGCTGAACCCGTCTACATTCTTGTTGGACGG 400892 29 100.0 32 ............................. AATACGAGGTCCTCTGACTCGTCTTCCCTGTC 400831 29 100.0 32 ............................. TACGTGCGCTCGACCACGTAGTAGGTCGTGTC 400770 29 100.0 32 ............................. GTCGCACGTCACAAGAAAAATCGAGCGTGTCA 400709 29 100.0 32 ............................. ACTGGCCCACCATCCGCGTCGGTGACGTGAAT 400648 29 100.0 32 ............................. GCCGGCCAGCCGATCACCGCCACCCAGGGGTG 400587 29 100.0 32 ............................. GCGATCGCGCGCGAGCTGCAATGCGCGGTGCT 400526 29 100.0 32 ............................. CCGACCGCCTCGGCGATCTCCTCCAGGCACGG 400465 29 100.0 32 ............................. GGGCGAAATTGACCGCCGACGAAATTGCGCGA 400404 29 100.0 32 ............................. AAAGGGGCAAGCGAAAAATCGACCTTTTCTTC 400343 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 45 29 100.0 32 GTGTTCCCCGCCCACGCGGGGATGAACCG # Left flank : GACGCGCCGGCGGAAGCCCAACCGCCGGCGATCGCGGAGCCGACGTCGGGCGACATCGGGCACAGGGGATAGGCCGATGATGGTGATCGTGGTCGAAAATGTTCCGCCCCGTCTGCGCGGACGTCTGGCCGTGTGGCTGCTGGAGGTGCGTGCCGGTGTTTATGTGGGGGTCTATGGCCGCCGGACCCGCGAGATGATCTGGCGCCAGGTGGTTGACAATATCGGCGAAGGTAGCGGGGTACTGGCCTGGAACGCGCCCACCGATGCTGGGTTCGAGATCGAAACCTGCGGCCCCAACCGGCGCGAGCCGGTGGACTATGACGGTTTTCGGCTGGTAGCGTTCCGGCCGCAGGAACGGCTTGGCCCTCAAGACCACCAGAAAACCCGCGCCGATAATCGCTCCTGAAAACACTGAACTGGAACCGCTGAACAAAGGCGGAACCGTCGGTGGGTTGTTTGACATTGTAAAATGTGTTTAAGGTCAACGCTCTACAAGAAGA # Right flank : CCCGGAGCGCAGAGCAAGCGCTGCGGTCTTGGGCGAAGAATGCGGGTGGATGCGAAGACCGGTCAAGCCGGAGAGGCGCATAAAACGGCGCTTGAGAGACCGGTACGGAACACCGTCGGGAGGGGGTGGCGGAGGAGGAGGGATTCGAACCCTCGGTACGCTTGCGCGCACAACGGTTTTCGAGACCGCCCCGTTCGACCGCTCCGGCACTCCTCCGCACGCGCGGTCACCCGTTCCCAGGCGAAGCGAGGGCGGACCCTACTCAAGCCACCGCACGCTGGCAAGGCCTGATTTGCGCTTTTCGACCCGACGTTGGCGCTTGACCGACCGGGCCGCTTGGCTATATCTAACCCGGTTCGGTGTCTCGGCGTGGGTCGGGGCACCGTTTGGCGTTCGCGTGCACGTCGGGCCAAGCGCCCCGACACCGGGCTTGGCCCGGCGCGCGAAGGTCCGACGCCCGGCATCGTCCGAGACCGCCCCGCCGAGCCGGGCGGCTTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //