Array 1 12814-11259 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXM01000005.1 Salmonella enterica subsp. enterica serovar Cerro strain BCW_2849 NODE_5_length_247603_cov_0.518897, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12813 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 12752 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 12691 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 12630 29 100.0 32 ............................. GCTCCGCAACGGTACAGAGCAAAAAAACACGC 12569 29 100.0 32 ............................. CGCACTCAGGCCGGAAAAGTTATTTACGAAAT 12508 29 100.0 32 ............................. ACGCGCCGCCGCCTGGCGGCTTTAACTCAGGT 12447 29 100.0 32 ............................. CAGCCTCGTCCGACACGGATCAGGGTGAGGTA 12386 29 100.0 32 ............................. CCGTGATTCGACCTCTAAATGGGTTCTCATTC 12325 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 12264 29 100.0 32 ............................. TCGGTCGATCTGCATATCGATACCCGCGGTTA 12203 29 100.0 32 ............................. CACAGAAGACGATAACGGGAGATTTCCCTAAG 12142 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC 12081 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 12020 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 11959 29 100.0 32 ............................. TTTATTTTTTATTCGATATTGTTTTTGAATAT 11898 29 100.0 32 ............................. GATTGGAAAACCAATCTCTTTGTTACCACATC 11837 29 100.0 32 ............................. ATCACGCACCCGAAACCTACACCGGCTTATTC 11776 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 11715 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 11654 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 11593 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 11532 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 11471 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 11410 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 11349 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 11288 29 93.1 0 A...........T................ | A [11261] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30829-29520 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXM01000005.1 Salmonella enterica subsp. enterica serovar Cerro strain BCW_2849 NODE_5_length_247603_cov_0.518897, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30828 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 30767 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 30706 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 30645 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 30584 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 30523 29 100.0 32 ............................. GAGTCAGCCCAATGAGCAACATCGACAAATCA 30462 29 100.0 32 ............................. CAAAACGGCCTGGTAAGCTGGAATGACAACGC 30401 29 100.0 32 ............................. GCAACCCCGTTTCGCAGATCGCCGCCCTCGGA 30340 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 30279 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 30218 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 30157 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 30096 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 30035 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 29974 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 29913 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 29852 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 29791 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 29730 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 29669 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 29608 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 29547 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //