Array 1 34532-34365 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOUW01000015.1 Campylobacter jejuni strain CDPHFDLB-F15M00516E1 CDPHFDLB-F15M00516E1_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 34531 36 94.4 30 .GG................................. ATAGTGATGGCAATTGGCTTGAAAATATAG 34465 36 100.0 29 .................................... TTTAATGTTGTGTAAAGTGATAATGGTAT 34400 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 98.1 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : GCCGACATAAAACCAGGTAGACATATCAAAATAGCCAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTACGCAAGAGAGATTTTAAACTCTTGGTTACTTCAGCCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGCTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGTAATGTGGAATTTAAAAATGGACGCATTTTAGCCAATCTTGAAGGCAAGAAAGAAGGCTCTAGTGCGATTATAAATAATCTTAACAATAAAGCTGCCCTTATGGTGGTACCAAAAGAATGTGAAATGTTAGAAAATGAAAGTTTAGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTTGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCAGAGTTTCAATCCACTA # Right flank : AGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTGATGAAAAATAGCAAAAATTATGCTATAATCTCAATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTAGTTTCGTTATTAACTTTTTCATTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTACAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGCAACATAAAATAACCTAATTTTATAAGATTGTTTCTAAATTTACTT # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.79%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 33329-33560 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOUW01000014.1 Campylobacter jejuni strain CDPHFDLB-F15M00516E1 CDPHFDLB-F15M00516E1_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 33329 35 100.0 30 ................................... CATTTATAACAATATACCTAATGACTATAT 33394 35 100.0 31 ................................... CTCCTTTTTCAAAAACCTCATCACTAAAATT 33460 35 91.4 31 ......................C..G..A...... CCTTTCAAAATCAATTTTACAAACTTTAAAA 33526 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =============================== ================== 4 35 97.8 31 ATTTTATCATATAAACAATTAATAATAGGCTAAAA # Left flank : GTAAGAGCTGATTTATTTGTAGATAAAAAAAATAAATTCCATGCAGTGTCTATTTATAAAGCAGATTTTTCTACAAAAAAACTTCCAAATAAAACCCCTGCAACTACATCAAATGGAGAAACCAAAGAAGGCATTGAAATGAATGAAAATTATAACTTTTGCATGTCATTGTATAAAAATACTCCAATTAGCGTAAAAATAAAGGGTATGAAAGAGCCTATCATTTGTTATTATCATGGTTTTAATACTTCAGGAAGTAAAATAACTTATAAAAAACACGACAACAATTATCACAACCTTAGTGAAGATGAAATGGTTGTTTTTAGAAAAAATGATAAAGAATCTATAGCGGTAGGAAAAATACTTGAAATTAAAAAATACAGTATAAGTCCTTCAGGTGAATTAAGCTTAATTGAAAACGAAGAGCGTAAATGGTTTTAGATATTTTTGCTCAAAAAATAAGAAAAAACATTGGTAAAATAGGCTTTTGAGATAAGTCT # Right flank : AATAGCTTTTAAATATTTAAATTCATAAGAAAATATTTCTTAATCTGCTTTCATCACAACTTTTCAAAAAATCATAGATTTTCTTTCTATAAGTTGATTTATCCTTTTTCCAAGTATTTAGCGTTGGTAATGGAATTGTTGTAATTTTGGCAATTTTAGAATCACTTAAACCTGTATTAGAAGAATTAATAGAATTTGAAAATATTTCTTTTAATTCTTCTTGATTAGTGTTTTTTAAAAAAAGATATATTTTTCCTCTCCAATTATCTTTTTTTTGTTTCCAGTCTCTAATAGTGAAATAAGGAATATTAGTAATTTGTGAAATTTGGACATCATTGTTCATCAGGCTTGAAACCACTATCTAAAATTATTTTTGTCATTACACCCTTAAGTTTATCAAAATGATTTAAAGCTTGCACATTGCTAACTCTAAGCAATCTTATTTTCCCATCTTTTTTATAAAACACCTGAAAAACTTCATCGCTTTGTTTGCATTTTAC # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATCATATAAACAATTAATAATAGGCTAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:85.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //