Array 1 16527-20096 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNJ01000013.1 Vibrio cholerae strain VcN1 NODE_13_length_98787_cov_7.48599, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16527 28 100.0 32 ............................ ATTCCCAGTGTGCCATTGCTGCGGCGACCATT 16587 28 100.0 32 ............................ GCGAGAGAATCGGAGCCATAGAGAGGCATCTC 16647 28 100.0 32 ............................ TTTGGCTGAGTTCCTTCCTAAGCTCCCGCTAG 16707 28 100.0 32 ............................ ATATCAAAGCCCGTTGTTTTATTAAATATATC 16767 28 100.0 32 ............................ AATACTAAAATCACCGTAAGGGGTTTTTAAAA 16827 28 100.0 32 ............................ AAATCAAAGAAAGTCCGTTGCTACGTACCAAC 16887 28 100.0 32 ............................ TCAGCCAACACCTAACCCCGACCCAGAACCTG 16947 28 100.0 32 ............................ GTACCAAAAGTGATCAGTAAAGCCGAATTCAA 17007 28 100.0 32 ............................ ATAACCGCAAGTCAGGTAAACACTTGTACAAG 17067 28 100.0 32 ............................ AACTAGAAGCACCGCCACGGTTATAGCCCTGG 17127 28 100.0 33 ............................ ATTGTGGAGAGAGTGATTACTACTATCTACGCA 17188 28 100.0 32 ............................ TATTACCTCTCGCCGAGTATATGCGCAAGCTT 17248 28 100.0 32 ............................ TTCACGGATATTAGTGATATTGATGAAGTCGT 17308 28 100.0 32 ............................ TTAAAGGCTACTTCTAGCGCTGTTTTGTCGAT 17368 28 100.0 32 ............................ GTACTGCGTGAAGCTTTGAGCCATTGAACCAA 17428 28 100.0 32 ............................ TTCGGGCGCTTTAACCCCTAACCTCACTAATT 17488 28 100.0 32 ............................ CGCTGCGCCTTGCGTTGCTTGGTTAACGACTG 17548 28 100.0 32 ............................ TAAAAGGTGTCGTCACCGTGGAGTTCATCAAA 17608 28 100.0 32 ............................ AGAAAGCTCTCTAACTACATCAAACAATCTAG 17668 28 100.0 32 ............................ ATATCAAAGACCGAACAGCACTTGGCTGACTG 17728 28 100.0 32 ............................ TTGTGTGATAACCGGAAAGACAACTGATGTTG 17788 28 100.0 32 ............................ ACGATCCAAACGTGTGCCGGCAGTCGTGATTC 17848 28 100.0 32 ............................ AATTTGACATCTTCTGGAGCCGTTATTGGTGG 17908 28 100.0 32 ............................ GTCGGCGAACGGGGACAGCAACCAACTCAGTA 17968 28 100.0 32 ............................ GCGCCGCGATACTCACGCGGGATCACGTAGCT 18028 28 100.0 32 ............................ AAGGCCGCGAGGCGCAGAGAGCGACAAACCAA 18088 28 100.0 32 ............................ TTTCAGCAGCTTGCCGCGCCCTCGTTTTCGTT 18148 28 100.0 32 ............................ AGATTAACGGTACTGGTTGCAAACACTTATTC 18208 28 100.0 32 ............................ GCTTTGGCTGTTCCGCGAGCCATGTCGTGCGC 18268 28 100.0 32 ............................ AATGCCACGCGATTTACTTAAGTGTGTTCTTA 18328 28 100.0 32 ............................ CACACAAGAGCCACGGCGTACACATTGATTAT 18388 28 100.0 32 ............................ TCGCTGAGTTCCGCTTGCAAGGCAGGCAGGCC 18448 28 100.0 32 ............................ TTATACTCGGCCTGATTACGAGCAGCGAGACG 18508 28 100.0 32 ............................ AGAGGGCAATTCATGGATTTTAGTCGGGTCAT 18568 28 100.0 33 ............................ ATTCATCGGCAGCGCGGCGAATGGTTTCTAGAA 18629 28 100.0 32 ............................ TTTTCGGAGCCTACGCGCACCAAATCGGCTTT 18689 28 100.0 32 ............................ GCTTGAATTTCCAAGAAATTGCAGAAAAACAA 18749 28 100.0 32 ............................ CGTGCGCGATGACATTCTGGGATTGGATGAAG 18809 28 100.0 32 ............................ CAAAACGTATCCCAACTCTATCAATTTGAGCA 18869 28 100.0 32 ............................ GCCAATTCCGACAAGGCCGCACTCAACTTGTC 18929 28 100.0 32 ............................ TTTTAACAGCAATTCGTTGTAGTTTTCGTTAG 18989 28 100.0 32 ............................ ATTAATGCCAACGGTTACAGGCTTGGTTGTGA 19049 28 100.0 32 ............................ GGTTTCGTCTGATATGTCGCCGTCCATCGCGT 19109 28 100.0 32 ............................ CTGTACTGTTTTGGGCGAAATAATGCCCGCCG 19169 28 100.0 32 ............................ TCAATGCTGTGTTCGGCATTGTAGGGGTTGAG 19229 28 100.0 32 ............................ TTTGGCCGTAATAAGAGATCACTTTCTGCCAT 19289 28 100.0 32 ............................ AGTTCAAAAAAGTACACAAAGCCGCCCGTCGA 19349 28 100.0 32 ............................ AGTACGGATACTCAGGTACGTTTGAAGAGTTT 19409 28 100.0 32 ............................ ATTAGTGGTGCGAAGATGTGAAATGAGCGTGG 19469 28 100.0 32 ............................ TTGGTTCAGCACAGAAACTGGACGTTTGCAAA 19529 28 100.0 32 ............................ TGTCTATGAAGTGACAAAGCGAATGATTGTGC 19589 28 100.0 32 ............................ TGCCTCGTGGGTGAGCGTTTCCTGCACTAACC 19649 28 100.0 32 ............................ TTTTGCTCAATAAATGCGGCTCCCATGTAAAT 19709 28 100.0 32 ............................ TGCTTTGGGTTCCACCCAGTCAGATGGCCGTT 19769 28 100.0 32 ............................ CGCTGGGCCAAAAAAGACCAGGATATCTTTTT 19829 28 100.0 32 ............................ GAATGCGCACTGGAAGTGGACGGTCAAGTGGT 19889 28 100.0 32 ............................ GCTCTCGATATCGGGCACACCCTACACGCGCA 19949 28 100.0 32 ............................ TAGCAACGGCTCGAACTCTAGCCCGTGTTCTT 20009 28 100.0 32 ............................ TTGAAAGCGCATACGGTAAGACAGTGTTTGCT 20069 28 89.3 0 ...........C.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 60 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCATTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGATTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //