Array 1 110241-109787 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRFG01000028.1 Vibrio quintilis isolate CECT 7734, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 110240 29 100.0 32 ............................. TGATGGGGCGTGTTGTAGTTACATTAAGAAAG 110179 29 100.0 32 ............................. CGGATACTGGATCAGCACAACAACCGTATCAC 110118 29 100.0 32 ............................. TCTAGCTCTTCTTTCAGCATATCCAAAAGTTC 110057 29 100.0 32 ............................. TAAACAGGATCTACGAGCAAAGATTATGGGAA 109996 29 100.0 32 ............................. CTATCTTCAGCATTATCTGAAAATAGACAAAA 109935 29 100.0 32 ............................. GAATTAGCTATGTTTCGAATGAACAGGACATC 109874 29 100.0 32 ............................. AGCTTTATCCAAAATCAAATTTGCCCGGTCCA 109813 27 89.7 0 ......................--....C | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGTTCCCCGTACATACGGGGATGAACCG # Left flank : GTGCCTCCGTACGAATAGATGAAAAAAACTCACCACTCAGAGGTCCTAAGAATGGGTGGTGAACTGAACAAGGTTAGGACAACCGCCCGTACGGAAACGGCCTGACCGAAGTCAGCCTCGTTCAGCTCACCATGATTTGAAATGCTTTTGTCTGAAAAAGTGACAAAACCATAAAATTCAGGTGTAAATAACTGCATATAAATAAATCAGCATGAAGCTGACATTTTATATGTCGTACGGTTGAAATCCGGGGTCCTAAACCCGTCACCGGATTTTGCCGGTGAGCGGCTAGAATAGTCTTGGCCGGGTAGAGAGTCAATGACTGGAAATAAGGTCATCAGTAAAGGTCCGGATATCATTTCTGCGATATCTTGTTCTGGTCGTGACATTGTCGAATAGTGCGCGCAATCCCGTGTTCAAATGAGGCTGTTTTCGTGCCGGAAAGCTGGTAGATTTTGAAGTGCTGATTTTGTTTATTTAAATCAATGATCTACAATTAG # Right flank : TATAACAGGCAAATTCAGGATGAATTTGAGGTTTTGTGCGCATGGATGCGCTTACAAAACCGACCCGGCCAGCGCGCGCCAAAAGGCGTTTCCGGATACGCTTTCCGCCGGGAAAGGGTATCTGGGGCGCGTGCGACAGAGGTCGCTTGAACCCACAAAAATTAATGGCGCACCACACTTACCACAGAAGCCAGAATCTTCCGGACAAAACAAATCAGCTAACCGCATGGATGCGCTTACAAAACCGATCCGGCCAGCGCGCGCCAAAAGGCGTTTCCGGATACGCTTTCCGCCGGGAAAGGGTATCTGGGGCGCGTGCGACAGAGGTTGCTTGAACCCACAAAAATTAATGGCGCACCACACTTACCACAGAAGCCAGAATCTTCCGGACAAAACAAATCAGCTAACCGCATGGATGCGCTTACAAAACCGACCCGGCCAGCGCGCGCCAAAAGGCGTTTCCGGATACGCTTTCCGCCGGGAAAGGGTATCTGGGGCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACATACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116687-116536 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRFG01000028.1 Vibrio quintilis isolate CECT 7734, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116686 29 100.0 32 ............................. GATATAACGGCTCTAATTATTTTGTTGAAAAA 116625 29 100.0 32 ............................. TAGGTTAACTCAAGAAAATTACAATGTGCTGA 116564 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGTGCATACGGGGATGAACCG # Left flank : AGGAAAAGTACCCAAAACTCCTTTTTTATTTGGCTTTTTCAGGTGAGATGCGGAGCGGATTGATTCGCATCCTGCTCAGCAATCCTTAAAAAACCGTCCGGGTTTTTTATCCGCAGGATATTGGGTTTTTCTGGCTTGGTCATGTTTGAGTATTCTCCGTACATACAGAGAAACCGTATAGCAGGCAAATTCAGGATGAATTTGAGGTTTTGTGCGCATGGATGCGCTTACAAAACCGCCCCGGGCAGCGCGCGCCGAAAGGCGTTTCCGGATACGCTTTCCGCCGGGAAAAGTATCTGGGGCGCGTGCACCTGAAGCTACTTGAACCCACAAAACTCAATGGCGCACCACACCATTCCACAACAGCCTGAATCTTGCGAATAAAAACAAACTTTTCCGGGTGAATATCTGTGATAAGAACAGGCAGTTTTTGGTGCTGAAAAGTTGGTAGATTTTGAAGTGCTGATTTTATTTATTGAAATCAGTGATCTACAATTAGA # Right flank : CTCTGTAGCCGGAGTATCAGCGATTTTTATGCAAGAGGGACAACTGGAAAAGCCAGTTAGCGCAGGCGTACCCGATGACCCCGGATGAGGAAGAAACAGATCTCGTTTTATCTGCCAGTGATAAACAATATCAGGAATATGTTTTATCGTATGGGAATACAGAATAAAAAGCTGAGTTAAAAGGGAGTCACCTGAGAATGACCAAACTCACCCGAAGGGCGTGAGCTGAAAGGCACATTTCTGCGTCAAGAGAATTTGAAAGGTGGGTACATTCCTGCATTCCCTTTCCTTGAACTGTACCTTTCGGCTGCACGCTGAATCCTGCATCTTCAGGTTGCTTGGGTATATAACGATGAATATCATATTTTAGGGTTAATTAATTTACTATATGTTTGTTGATGCAGTAAAAAAGCATTATCATGAGATCAATGAGAATATTTATTGTAAATATTTTACATAAGGAGAAATAAATATGAGTATTAGCGAGAAGATTAATACCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGCATACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.70,-11.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1098-522 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRFG01000061.1 Vibrio quintilis isolate CECT 7734, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1097 29 100.0 32 ............................. CTGAACACGTTATCAGATGGCGTAACAGAGCG 1036 29 100.0 32 ............................. TGAGTCAGATTCAGACCGCCAGTTGCTGCGGG 975 29 100.0 32 ............................. CGGCAACGATTGGATTGAAATTACTGAAACTG 914 29 100.0 32 ............................. ACTCAACAACATCTGCCGGAACAAATATTGTT 853 29 100.0 32 ............................. AACGGTAACTCGCAGCGGTTGGATGAGATGCA 792 29 100.0 32 ............................. GACAGCGAAATGCAGCAGGGCTTAATCACTAT 731 29 100.0 32 ............................. CAGGCTGCCGGGCCTGTTCTGGGTGGGATTTT 670 29 100.0 32 ............................. CAGCGCCGAGCACGATCCCCAAATCAGGCAAC 609 29 100.0 32 ............................. ATGGCCAGATCACTATCAAGAAAAGCAATTCG 548 27 86.2 0 ..............C.......--....C | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.6 32 GTGTTCCCCGTACATACGGGGATGAACCG # Left flank : AGCTGAATCAGATATTCGCGGGCTTTCTGGGAAAAGTGTGGATCGTAAGTGATTGTTGCAGGCATAAGTGCCTCCGTGTGGGTCATTGAAAAAAATAATCGCCACCACACTGGTTCCAAACAGAGGGGGGTGAACTGATCGAGGTTGGAACTACCGTACACACGGACACGGCCTGACCGAAGTCAGCCTCTCACAGTCCACCATAATTTCTGAAATGACTCTGGCTATTAAACAGTCAAAATCACAAAAATCAGGTATGTAAAAACTGCATATAAAAAACCAGCATCAAAGCTGAGCATTTATATATGCCGTGTGCGAAGTATCGAGGTTCCAAACTCGTCACCGGATTTGGCCGGTGAGCGGGTAGCATAATCCTGGTGGGTTTGAGAGTCAATTATGGATGAATTGTTGTAGGAAAAAGCTGCTTTTTGGGGTGCAAAAAAGTTGGTAGATTTTGAAGTGCAGATTTTATTTATGCAAATCAGTGATCTACAATTAGA # Right flank : TATAACAGGCAAATTCAGGATGAATTTGAGGTTTTGTGCGCATGGATGCGCTTACAAAACCGCTCCGGCCAGCGCGCACCAAAAGGCGTTTCCGGATACGCTTTCCGCCGGGAAAGGGTATCTGGGGCGCGTGCACCATGAGCCGCCTGGATCATCAAAACAAATTAGCGCACCAAATATTCCACGATAGCCAGAATCTTCCGGGCAACAGCCAGTTGCCAGTTAGGGTGCCTGTCCCGGTAATGCCGGTAATGCCTCCTTAGGGTGTCTGTCCTGGTAATGCTGTAATGCTGTTGCGGTGTCTGTCCCGGTAATGCTTCCCGGTACCATGAGCCGCCTGGATCATCAAAACAAATTAGCGCACCAAATATTCCACGATAGCCAGAATCTTCCGGGCAACAGCCAGTTGCCAGTTAGGGTGCCTGTCCCGGTAATGCCCCGGTAATGCCTCCTTAGGGTGTCTGTCCTGGTAATGCTGTTGCGGTGTCTGTCCCGGTAAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACATACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14639-14366 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRFG01000061.1 Vibrio quintilis isolate CECT 7734, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14638 29 100.0 32 ............................. CTATGCAATGGGGCATGAATCCTTTCTCTGTG 14577 29 100.0 32 ............................. AGTAATCAGTTTGAGGCGGATTACTTCGAACA 14516 29 100.0 32 ............................. AGAGTCAATCAGACAAGATAGTCCAACAATCA 14455 29 100.0 32 ............................. CTGGTTCAGTGCCTTGGGCGGGATAGGTTCTT 14394 29 93.1 0 ............CA............... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGTATGTACGGGGATGAACCG # Left flank : CTGTGCAGTCATAAGTATCCATCATTTTTTTTATCAGGAAGAAACATTCTCGGGTTTTATTCTTGGGTAGAAACGCGCGCATTGTCGCAGATCTTTAGCATAACATCCACAGGCAAACGTTTGCCTGTGTATTTTTTTCGCAGAAAATATAAGAAATGCTAAATTTTTAGGCACTTAGAATGTTAAACAGAATAAATTCGTTGATTTACGTTTTTTAACTCGTATAATTCCCTCCCGTAACGCGCCCTTAGCTCAGCTGGATAGAGCACGTGCCTTCTAAGCATGTGGTCACAGGTTCGAATCCTGTAGGGCGCGCCACTTATTTCAGGCCCCAGCATCATTTGATGCTGGGGCTTTTTCATTTCTGCTTTGCAGCTCAGCCCGCAGCGGGATTTTGCGGGCTTATTTTCGTCGCGGAAAGCCACTGTTTTGGGTGCAAAAAATCTGGTAGATTTTGAAGTGCAGATTTTATTTATGTAAATCAGTGATCTACAATCAGA # Right flank : AATATTCACGCTGGTCTGGAATACCATTCAATGTGTTTCCCTGACATCGCTGTGATTGTGTTGAGTCTGATATGTATTCCCACGCAGGAGCGTGGGAACAATTCAATATCCGAAGCTTTCAGAAAGTGTTCCCCGTACATACCGGGAAACCCTGGAACAGGCAAATTCAGGATGAATTTGAGGTTTTGTGCGCATGGATGCGCTTACAAAACCGATCCGGCCAGCACGCACCAAAAGGCGTTTCCGGATACGCTTTCCGCCGGGAAAGGGTATCTGGGGCGCGTGCGACAGAAGCCGCCGGGATCAGTAAGACGAATCAGCGCACCAAATATTCCACAGCTGCCAGCATCTTCCGGGGAAAGATAAAGTATCAGCAGTTACGGCACGGCATGACCTTTTGAAGCCGTCCATATTCTGAACCATTGCTCCCGGCTTAACTCAATATTCAGTGCGTCAACGGCCGCTTTGACCCTCTCGATCTTTCCCGAGCCGATAATGGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGTACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20259-20466 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRFG01000037.1 Vibrio quintilis isolate CECT 7734, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 20259 28 100.0 32 ............................ AGCAGGTTGGCAGCCTGCCGGTGGTTGAGCGT 20319 28 100.0 32 ............................ TTCATACTCAGCGATTTCATACCCTTCCCAGC 20379 28 100.0 32 ............................ AATAAGGAGCATCTTTGCTTGCTTCTTTCCAC 20439 28 92.9 0 G...........G............... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 ATTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGATGCCACTGACAGAAGCATCCGTGAAAATCAGCAATAAAGGGGTTAATGATGATGAATCGGATCTCAGCCATCCTGTCTGGGCAGGCGTTATGCCTTACCGCACAGTTGTCGGGCCATTACAGCCAGCACCGGATTTAGCTCCCGGTATCGAAACGCCGGACTATAGTGCCGCCTATGCAAAACACTGGAAAGACGGTTGCAGGGATGTATGAGATTTTGCCGCTCGTTCCCATGCTCCGCGTGGGAATGCAGATCCGGACCTGAAGCAGACAGCTCACTCCCCTTATTGCCGCCTGATACAAATCCACTGCAATGAAAAAGGTGAATCAAACCAGCTACCACAGCCAAAAGCTTCCACCGTCCCGCAGACCCTTTTTTCACCCCCTCTGTAACTCATTGATTTTATATACCAAAAATCAGGCACTCAAAAAAGGGGGTTTGCAAAGTTTTCAGACGCAGCCCTGTTGCTTTCTGGCCTGAGCCGCTATACTGCAACG # Right flank : AATCGAGATCAGCTAACCCGGCGATCAGACTTTGTTCACTGCCATACAAACGTCAAACACTCATTCCGGCGCTCAACTCAGCGGATGCTGAGTGACATCCATCCGCTCATGCAAGACCCGGACAATATCAATATGGGTCGCTGTTATCTGGTAAAGCACAATATGATGCCTGAAATGATAGGCACGCAGGCCGGAAAAAATATAACCGGCTGCCCGGCCAAGTTCGGGCATACCCGCCAACACAGACAATTTTTCAGCCAACTCTCTCAGGTAACGATCTGCCTGACGACGCCCCCACTTATCACAAGTATATTGCCAGATGTCGAGCATATCCTGACGGGCCAATGGCCGGATAAAAGGAGTGACACTCATACGTCGGCGCGTTTTCTGGCTTCACAAAGCAGATCTTCTACGTCAAACGGCGCTGGTTCACCGCTTTCAAGTCCGGCATTGGCTGCGCTGCGAAGCGCAATTAATTTCGCCTGATAGACTTCATCCTG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 21477-22466 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRFG01000037.1 Vibrio quintilis isolate CECT 7734, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21477 28 100.0 32 ............................ ACAAAGGGCGGGCGCTGGGCGTTAATCTTCTT 21537 28 100.0 32 ............................ GTTCAGTTTGATTTTGCTCCCGTTCGCGACAA 21597 28 100.0 32 ............................ TTGAAGAGGCCGCGTCAATGGCCGGGTTGCTG 21657 28 100.0 32 ............................ TGATTCATGGACTTAAATCGCTCAACGGCCAG 21717 28 100.0 32 ............................ ACTGACTGATTTCCCCCTGTTGCGCTGAGCAA 21777 28 100.0 32 ............................ ACCAAAAGCCAGAAAAATTTTCGTCAACTATT 21837 28 100.0 32 ............................ ACCACGTCGGACTTTATCAAAGCCTCTTACGA 21897 28 100.0 33 ............................ ACATCAAAACCAACCGGACATAGTGGCTCTCAT 21958 28 100.0 32 ............................ AATGGGGGGCTGATGTTCCTCGGAACCCGGAC 22018 28 100.0 32 ............................ ACTGAAAATAAATCCATGATGAGTCCCGGTAC 22078 28 100.0 33 ............................ CAGGAGCAAAACCCCGGTCTGATTTATCTGACA 22139 28 100.0 32 ............................ CTCAAAGTAACGAAAGGCTTCCATTTCAGATT 22199 28 100.0 32 ............................ GATATGGGCGGTTAAATGTGCCAATAGTTCGA 22259 28 100.0 32 ............................ ATAACAGGGCACGTGGTACACACGCGATTGAC 22319 28 100.0 32 ............................ ATTTCAATCGCTGGCATGAGTGCATTCTGAAT 22379 28 92.9 32 ...........GA............... CGGAAGAACTTGAAGCACTGCTTGACTCAATT 22439 28 75.0 0 ...........CAC.......C..ACC. | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.1 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACCGTAATGCTTCACGAATCACTTCACTGGCGTTGTTATACATACCGGTATCCAGTTGCTGCCGGATATAGTCTTCAAAGACAGAACTTAAGTTTACATTCATCAGTCGTTCCTCCCAGGTTCATCCTATCTTTATGTCTGATATTGTCAATATTAGACATATATTTAACCCAAGGCGACTTTCGGCCATATCGGAATGATACTTCAGACCCTTTTGCAGCTCGTTCCCATGCTCCGCGTGGGAATGCATATCCGGACCTGAAGAAGGCATTCAACTCATTTCCCTTATCGCCGCCTGATACAAATCCACTGCAATGAAAGAGGTGAATCAAACCAGCCACCACAGCCAAAAGCTTCCACCGTCCCGCAGACCCTTTTTTCACCCCCTCTGTAACTCATTGATTTTATATACCAAAAATCAGGCACTCAAAAAAAGGGTTTTTGCAAAGTTTTCAGCCGCAGCCCTGTTGCTTTCTGGCCTGAGCCGCTATACTGCAACG # Right flank : ACGCCAACTTAACAAAACATAACAATCATCCTTGATTGAATAGCGCTGGGTTGCTTAACATAAGCGCCCGGTTTTACAACAAGGACAGCACCGTGGTACAGGAATTCTCCCCCAGCGAACTCAAAACCATTCTCCATTCCAAACGTGCAAATCTGTACTACCTGCAACACTGCCGGGTTCTATTTAACGCCGGGCGGGTGGAATATCTCACCGATCAGGGCAAAGAAAGCCTGTACTGGAATATTCCGATTGCCAATACTACCGTGATTATGCTCGGCACCGGAACATCCATCACACAACCAGCCATGCGGGAACTGGCCAAAGCCGGCGTATTGGTCGGGTTTTGTGGCGGCGGAGGAACGCCTTTATATGCTGCCAATGAAGTTCAGGTCGATGTTTCGTGGCTGACGCCACAATCCGAGTATCGCCCGACAGAATACCTGCAACAATGGTGCAGCTTTTGGTTTGATGATAAAAAACGCCTTGAAGCAGCAAAAATG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 31404-31791 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRFG01000037.1 Vibrio quintilis isolate CECT 7734, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31404 28 100.0 32 ............................ GTTATCTGCAGACAGCCATTCATCATGCAAAT 31464 28 100.0 32 ............................ TCATAGTCCAAACTACCAGGATACCAATCTTC 31524 28 100.0 32 ............................ GTTGTAACCATTGACCTGGTTTCCTTCCCACA 31584 28 100.0 32 ............................ GGTCTCGACAGCTCAAACCATTATTCAGAGGT 31644 28 100.0 32 ............................ TCCATTAATGCGGTCTGCTCCTGACCGCTGTT 31704 28 100.0 32 ............................ GGCAGAATCATCAATATCAGTTACAACCGGAG 31764 28 92.9 0 .......................C.G.. | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.0 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GCGATTTACTGCCGGTGCCGAAAAATATTGAAGGCTACCGGACAGTTTACCGGGTGCAAAAGAAAAGCCCGCATAATCTGCGCAAACGAGCGGTTGCCAAAGGCAGAATGACGGAAGCCGAAGCATGGCAAAAGATCCCGGATGAGAATCAGCAAGTGCTGAAACTGCCTTATCTGCAGTTACAAAGTCTCTCCAATCATCAGGTGATGCGGATTTTTATTGCACTGGGGGAATTACAACGCGAGCCGGTTGACGGGATATTTTCCAGTTATGGGTTGAGCCGTGAGGCAACCGTGCCGTGGTTTTAGGTTTCCCGGAGAAGTAACAACACTGAAGCCGGAGAACGCAGAATAAAATCTCCCGGCTTCAGACCCTTTTTTTCAGCCCCTCGTAACTCATTGATTTTATATACCCAAAATCAGGCACTCAGAAAAAGGGTTTTTGCGAAATTTTCAGCCGCAGCCCTGTTGCATTCTGGCCTGAGTCACTATAATGCAACG # Right flank : ATATTTTCAGACCGGGAAGAGATAGACCGCTCGTTCCCATGCTCCGCGTGGGAATGCATATCCGGACCTGAAGAAGGCAGCTCATTTCCCTTATTTCTGCCTGATGCAAATCCACTGCAATAAAAGAGGTGAGTCAAACCAGCTACCACAAACGCGGCCAAATCGCATGTTAAAGCATCCGGCTTCAGTGGCATCTATGGTGCGCCAATTCGCTTCGCTGACCCAAGCAGCCCAAAAATTACATATTCTTGCGGTTTTTATTGAGTGCTTCCTCAATCAGGCTGGTCTCAGTGGCGGATTCCACGTAGACTAAACTTCCGGCAGGTCAGGGAGAGATGTTCGTTTTATGTCCGAATCCGTTTACCAAATGCACCAGAATCTGATCCAAACCAACGCAAACCTGCGTGATTCTGTGCGCCTGGAAAATGGTACTGAGCTGGTCTCCTGGTTTAATCAGCAGGACCGGGTTCTGGTGCAAAACTCTGATCACCACACCTTAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //