Array 1 43-211 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAMI01000167.1 Neisseria meningitidis strain Neisseria meningitidis isolate 99646, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 43 29 96.6 39 .............T............... CCTTGGGATAACAGCAATATTCAAAGGTTATAAAAGACC 111 29 96.6 43 .........................T... ACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATGC 183 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =========================================== ================== 3 29 97.7 42 CGTCATTCCCGCGCAGGCGGGAATCCAGA # Left flank : TTCGTGGGAATGACGCGGTGCAGGTTTCCGTGCGGATGGATTC # Right flank : ACTGTCGGGCATCTGCAGCGGTTTGCTAAAAAACGCTTTACCGTGATCAGTGTGCAAAGTTAAAATGGGGAGGTAAGCTTTTCAACCAGCAATTCGGCGGGCGCGGAATCGGGCGGTTTACCGAACCCCGGCGTTCGCGGCGCGCCGCCCCGTCCCGTGAAGGCAAACTCAAGGAATAAAAGATGAATAAAACTTGGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGGGGGGGGGGGGCAGGCGCAAGCGCAAACGCAAACGCATAAATACGCTATTGTAATGAACGCGCAAAATCTGCCCGAGGTAAAGTGGGGGAATCAATATCAGTCATTGACGCACAAAAGCAATGAACGCGAAGTTATCCATACGAGTGGTTTTAGTTTGGTAAAAAAGCACATTAGTTTCTCATTCAATAATACCGATGAAGTTGTTGCTGAAAAAAAAGATGCTGTCGTTTTCGGCGCG # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCATTCCCGCGCAGGCGGGAATCCAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.60,-11.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 1520-3205 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAMI01000186.1 Neisseria meningitidis strain Neisseria meningitidis isolate 99646, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1520 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 1586 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 1652 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 1718 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 1784 36 100.0 30 .................................... TCCATGTGAACTCGTTGGCGCGTTCGATGA 1850 36 100.0 30 .................................... TAAACCTCTGTCGGTTGGTTTGCTTAGATT 1916 36 100.0 30 .................................... CGAATTGGAAAAGTTGCCCTACCGGTGGGG 1982 36 100.0 30 .................................... GTCGCATGGTAAAATAACCACCGCTTTACA 2048 36 100.0 30 .................................... AAACTAAAACTTTGGAAAGTTGGAAAGTTG 2114 36 100.0 30 .................................... CGGCGCATCCCCTTTAATTTAATATCACTT 2180 36 97.2 30 ............A....................... ATAGAACCTATGGCTGCTACGGCGTTGACA 2246 36 97.2 30 ............A....................... TTTTGTGGAGTTTTGTTATGAGTGAGGGCA 2312 36 100.0 30 .................................... AAGCATTGACGATATTTGTGTGGCGTTGCA 2378 36 100.0 30 .................................... GGAAGAGCGGCATCTGAATGCGGAAGAAGA 2444 36 100.0 30 .................................... CATCAAATCATCCGCCGCGATTCGATCGCA 2510 36 100.0 30 .................................... ATGATGCCGAAACCCTGCAAGCCCTGAATA 2576 36 100.0 30 .................................... GCCTGATGCCGTGTCGTGCGACACCTGAGA 2642 36 100.0 30 .................................... ACCAAGATATATCAAAATTGTAGATGAAAA 2708 36 100.0 30 .................................... TGCGGAAAGCCTCCATGCTTTGCAGCACTG 2774 36 100.0 30 .................................... AATTTGCGCCTTGCTGCATTGTGTAGTTTG 2840 36 100.0 30 .................................... TTCTTCCCGATTGAGGTTGCTAGTTTTGTC 2906 36 100.0 30 .................................... AGTCAATGAATCACTAAAAGCCAAGTCAGA 2972 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTCCTTTACA 3038 36 100.0 30 .................................... TTTTTCGATTTTTTATATTGAGCGTTTTTG 3104 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 3170 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA //