Array 1 2779721-2777861 **** Predicted by CRISPRDetect 2.4 *** >NC_009778.1 Cronobacter sakazakii ATCC BAA-894, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2779720 29 100.0 32 ............................. CGCCACTAACGCCGTTTTGGCATCCGGTGCAA 2779659 29 100.0 32 ............................. TTTATCGTTCGGGCGGTAGATCCCTGCGTTTG 2779598 29 100.0 32 ............................. CCCCTTCTGCACGGCAACGACAGGAATCACGC 2779537 29 100.0 32 ............................. CGCGTCGGTATCACTGTCGATATCGAGTTTGG 2779476 29 100.0 32 ............................. GTCGCGCAAAGCGCCATGCGGCCTGCGCCCGG 2779415 29 100.0 32 ............................. CCCGCAGCAGACAGAGCCTTTGTCACCGCATC 2779354 29 96.6 32 ..A.......................... CCTACCGACTCCGAGAGAACGCGTACACAACC 2779293 29 96.6 32 ..A.......................... GAAAATGTGTTTAACGCAGTGAAAATGATGGA 2779232 29 96.6 32 ..A.......................... GGATTGCACGGGCAGTACTAATTACGTTGGAA 2779171 29 96.6 32 ..A.......................... CGCAGCGTGTTATCACCAACAGAGGTGTTTCT 2779110 29 100.0 32 ............................. CGGCACCACCTTGACGCAGCTGGGCTGCGAAC 2779049 29 100.0 32 ............................. CGGCAGAGGGAGGGGTTTTCGGTGATATTTCT 2778988 29 100.0 32 ............................. ATCACTTTCGCTTTACACGTGGTGACGATCCG 2778927 29 96.6 32 .A........................... CGGTGCCTGAGCAACTCGATCGCAATATTATC 2778866 29 100.0 32 ............................. TTTATTTCGTGCCAGGTAGCGTGTGTGAACTC 2778805 29 100.0 32 ............................. TATGGCGCTGGCGGTTCCCGGTGCAAACGCCT 2778744 29 96.6 32 ............T................ ACTACGGGTCGGACGTTGTCGTTACTTACCCC 2778683 29 96.6 32 ............T................ AAGGGTGGCGAACGTGCGTGAAGGGATTTCGA 2778622 29 96.6 32 .....T....................... GTTCTTTAACGCTCTGGTGACGCTTACCGTAT 2778561 29 100.0 32 ............................. ATTACAACCAGATCCCCGGCACTACGCAGACA 2778500 29 100.0 32 ............................. CCAGTTTCTCAACGTCCAGGCACGTGTGACGC 2778439 29 96.6 32 C............................ GATAACCGTAGCCAACAGGCCGTAGAAGAGGA 2778378 29 100.0 32 ............................. CTATTAACGATCCCGACGTTCGCGGCGTGCTG 2778317 29 100.0 32 ............................. TGGACGGGGGTTAAGCGCGGAACAGCTGAATT 2778256 29 100.0 32 ............................. ATCCCTCGCGGCGTTTTAAACTTGAGCAGCTC 2778195 29 100.0 32 ............................. GGAAGTAAACCATGCCCTACGCCACACCAGAC 2778134 29 96.6 32 ............A................ ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 2778073 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 2778011 29 100.0 32 ............................. CCGCCTGCGTCCTGACCGGCCTGTAGGCTTTT 2777950 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 2777889 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.5 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCAGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATAGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : ACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCAGCCTTTAAACTTTACAGGCATTATTGAACATGAATAAAACCATTTGCACCTTACTTATTACTGCCGCGTTGTGTAGTACTACCGCTGTTGCCAGTGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGCACATGGGGTGATCGATTGTATGGTGAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.95, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2807614-2805938 **** Predicted by CRISPRDetect 2.4 *** >NC_009778.1 Cronobacter sakazakii ATCC BAA-894, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2807613 29 100.0 32 ............................. GTAAACGGCGTTGCGCCGTCCGTCGTTGCCGA 2807552 29 100.0 32 ............................. TGATGTAGCTCACCTGGCGTTCCCCACTCTCC 2807491 29 100.0 32 ............................. CCGGTACGGTTAGTGGCACCAGGCTTGGCGTG 2807430 29 100.0 32 ............................. CGTCGCTGACGGCGCGGTACGTGATTACCTGT 2807369 29 100.0 32 ............................. TGGCGGGTGGCGCGGGTTTAATCGGATTAGGG 2807308 29 100.0 32 ............................. CCGGATTCCATATCGGCGGCGGGCATAGGTGA 2807247 29 100.0 32 ............................. TTTCCCCAGCTGCTCCCGCAGCACCTTACAGG 2807186 29 100.0 32 ............................. CGTGCTGCCGAGGTTGAGCGCCAGAACCAGGG 2807125 29 100.0 32 ............................. TTACAGTTAAGCGAAGAGGTAAGAGCGGCGAA 2807064 29 100.0 32 ............................. GGTAAGCCTACTGACGGCAAAACCGACGCCGA 2807003 29 100.0 32 ............................. CGTCGGTGGCGGGGGTTTCATTCAGTACGCGG 2806942 29 96.6 32 .C........................... AGATTTACGAAATAGACCCGATTCAGTGCATC 2806881 29 100.0 32 ............................. CGCTTAGCAACCCTAACGCTTATGCATTCCTC 2806820 29 100.0 32 ............................. TCACTTCGGAAAGCGGCGACAGCAAATAAGCA 2806759 29 96.6 32 ..T.......................... CGCACGCTTCCGTTTTCGCCGCGAGAGTGTAA 2806698 29 100.0 33 ............................. GCTAGCGCGTTGAATGTGACGGTAGTTTTTCGC 2806636 29 100.0 32 ............................. CCGCTGACCAGGTCATTACAGCGCTTGCTGGT 2806575 29 100.0 32 ............................. AAATGTGGGCCAGCGGCAAAAGCATCTACTTC 2806514 29 100.0 32 ............................. TAATACCGCCGATTCGATCCACTCCGGCTTCC 2806453 29 100.0 32 ............................. TAGACCCTCGCACGGTTCGTCATTATCTCTCA 2806392 29 100.0 32 ............................. AGCATCTTTTAAAGAGGTCTTTATGGGCCACA 2806331 29 100.0 32 ............................. ATTTGGTTCGGCCTGAACGATATACCGGTGAG 2806270 29 100.0 32 ............................. CCTCTAATACACAGGAGTTGCCACCCGGCGAG 2806209 29 100.0 32 ............................. AGTGTCTACATTTAATGATGTCAGTTTGTGTT 2806148 29 96.6 32 .C........................... TCTTCCGGCGCGTCGGCCAGCTCCACCTGCTC 2806087 29 93.1 32 .C.........A................. ATAACGGCCAACTTTACATTTAAAAATGATGG 2806026 29 93.1 32 .C.........................T. AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 2805965 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.3 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGCGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : CTCAGGCTCTTAGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACAATCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3131512-3130762 **** Predicted by CRISPRDetect 2.4 *** >NC_009778.1 Cronobacter sakazakii ATCC BAA-894, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3131511 28 100.0 32 ............................ GCTCCCGTCTTTCACGTTGAGGCGTTTCCCCA 3131451 28 100.0 32 ............................ GTCCATCACCATCACGTTGACTGCGCCGCTGG 3131391 28 100.0 32 ............................ GGATCGCCCGGCCCAGCCCCCTCCCTGCAAAG 3131331 28 100.0 33 ............................ GCAAGGCCGCTAAAAATTTCGGCGGCTCTGTTA 3131270 28 100.0 32 ............................ AATGAAACCATAGACGGTAAAGAGCATATTGT 3131210 28 100.0 32 ............................ CTGAAAGTTGACAACGCTTACCTGATGTATAT 3131150 28 100.0 32 ............................ TGGCACAAACGACTATGGCGCAGCGTGGGAGA 3131090 28 100.0 32 ............................ GTCGTGCTCAGGGTGGGTGTGAGCGGCACCGG 3131030 28 100.0 32 ............................ GCACTGCTGCGCTGAAACGCGACCGCGGATTG 3130970 28 100.0 32 ............................ GCGCGAGAGGAACAGTTCCCACGGCGCAGCCG 3130910 28 100.0 32 ............................ TCCCAGTCGTCGTTAACAATCGCGTAGTGGAA 3130850 28 100.0 32 ............................ GCCTGCGCCTGGAGCGCGGTAAACGTCTGCCG 3130790 28 85.7 0 ......................C.T.TC | T [3130768] ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAAGTGTTGATTTTTAATACGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : CAATTCCCTCGCCGCCAGACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCTGGCGGGCAAAACCACATTTGCCGGTAAAAATGTCACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGTGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGACCTGCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //