Array 1 155078-156572 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLC01000004.1 Cronobacter sakazakii strain cro32 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 155078 29 100.0 32 ............................. GTATCAATAGAGCGAGGTATCAAAATGAATGG 155139 29 100.0 32 ............................. GTCGCCTTTCACGAGCATCGAGCCGACCAGCT 155200 29 100.0 32 ............................. GCCTGCAAAATTACCGGCAAAGCGCCGGACGA 155261 29 100.0 32 ............................. TTCTGGAGGGCTTCGCCGGACAGCTGGAGTCC 155322 29 100.0 32 ............................. GGTTTGGGCCGGAATACATGAAGCAGTGGGAG 155383 29 100.0 32 ............................. AAACGCCAATCGCCGAACTTATCATATCAATA 155444 29 100.0 33 ............................. CATTAGCGCCAGCTTTCGCTGGTTTCCGCAGGC 155506 29 100.0 32 ............................. CCTGCGCACTCTCACTCAGTTAGCGTACCGGC 155567 29 100.0 32 ............................. CTATTTCCACAATAGCTCCAAATGAAAAAGCC 155628 29 100.0 33 ............................. GATCTTCACGGTGTAAAAACGGTTGAATACGAC 155690 29 100.0 32 ............................. GCTTTGTGGTAACGAAATCCCGATCAGCGTGA 155751 29 100.0 32 ............................. CCCCTTATTTGGTGAACTGAACGTAACCGGCC 155812 29 100.0 32 ............................. ATAATAAAGATGCCGTGACGCTGCTGGTCGCG 155873 29 100.0 32 ............................. CGAGCCATATCCGCTTTGGAAATGTGCTTGAC 155934 29 96.6 32 ............................T CGTTCCCATACTTGGGCTTCTTGGGGGTGGTG 155995 29 100.0 32 ............................. CGGATCGCCAGCAATAATCCCCTCGAGCACCT 156056 29 100.0 32 ............................. CTGAGGGATAAAACAGGACTGAGTGACAGACA 156117 29 100.0 32 ............................. CGCGCAACCACGTCGCCAAATCCTGGCTGCAC 156178 29 100.0 32 ............................. GACTGTCAACAGCATCAACCCAAACACGGATA 156239 29 100.0 32 ............................. AACGGTGAATTCTTAGAGGCTTAAGCACACTG 156300 29 100.0 33 ............................. CCGTGCCAGTGAGCGCGGCGCAGGTGAGGACGC 156362 29 100.0 32 ............................. TGTTTGGCGGCGCTGACGCGGCGACATGGACG 156423 29 100.0 32 ............................. GCGCGCAACAGCTTCGGCTCTGTGAATAACAA 156484 29 96.6 32 .C........................... AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 156545 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.8 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGAATCTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACTTTCGTATGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTACCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCGAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACCGTTAGT # Right flank : GCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCATCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182896-185060 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLC01000004.1 Cronobacter sakazakii strain cro32 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182896 29 100.0 32 ............................. CAAAATTACCGGCACCTTGTTGCGCAGGCAGA 182957 29 100.0 32 ............................. TTCAATAAACCCTACTCGCTCAAAAACGCCGA 183018 29 100.0 32 ............................. GTTGAGACGTTGCTTGAGGCGCAGCAGCAGGC 183079 29 100.0 32 ............................. CCGACTTCACTCCGGAGGAATACGGGCAGATT 183140 29 100.0 32 ............................. GTCGCAAGTGGGTTTTTCTGGTTACTTTTTGC 183201 29 100.0 32 ............................. GCGGCTGTTATCTGAAATACGTCAGCCGGCAC 183262 29 100.0 32 ............................. GCTGCGCACTCTTAACATGCTATTGATATGTA 183323 29 100.0 32 ............................. CGTGGGCGGTCTTTGAGCTCGAAGACGGCGGC 183384 29 96.6 32 ............................T GATGCAGGCGATTTCCCGGTGCCCCTGTTCAA 183445 29 100.0 32 ............................. ATGGGCGTATCGGTCGGGATGGCATTACCGGT 183506 29 100.0 32 ............................. ACGTGAAAATCACGCAGTACCCGCTCAACAGC 183567 29 100.0 32 ............................. GTGCCTTTAATATACGGTGCAATATACGATTC 183628 29 96.6 32 ...........................T. TCGTTCAGCGTGCCATCTTCTGAAAATGGCTC 183689 29 96.6 32 ............................A TTCGATCTCTGAGATCTTGTTCGCCACGACGC 183750 29 100.0 32 ............................. CTGCGGCCATGCGGCCAAGCTGCGAGGAGCGG 183811 29 96.6 32 ............................A AGACCAGAGAATAGCCATAATTTGGCGATGCC 183872 29 100.0 32 ............................. CACATATCGTAGAGCGACTCCGACCAGGCAGA 183933 29 100.0 32 ............................. CTGGTCGTGGCTATCCGTAACGCGAACGAGCA 183994 29 100.0 32 ............................. GTTCACAGCCAACACACGACAGCTATTCAACG 184055 29 100.0 33 ............................. CGGATCCCTGAACACGACATTGCCGCCCCGGTC 184117 29 100.0 32 ............................. AACTCAGGTTCAGTGCCAGCGGCAGTTTCTTT 184178 29 96.6 32 ...A......................... TTTCTCCAAACTCAAACCGGTAGCCTTTGGCG 184239 29 96.6 32 ...A......................... CGAGTAAATCAGCTTCTCAGAGCCGATAACGG 184300 29 93.1 32 ............T.....T.......... ACGGTCAGGTAGAAGATATGCGCATAAAGCGC 184361 29 96.6 32 ............T................ CCACCTGACGGGGTTATCTTATCTGTGCGATA 184422 29 96.6 32 ............T................ GGAACAACACCATTCTCTGCCGCCGGTAAGCA 184483 29 96.6 32 ............T................ TTTATGGAGAGCGTAGAGCCGGGAAGAATTAT 184544 29 93.1 32 .........A..T................ CGAAAGGGCAGTATACGGTTATGCTTCAAGAG 184605 29 89.7 32 .A..........T....C........... CGGCATCAACACACAGCGCGCCGGTTTGCGCG 184666 29 93.1 32 .A..........T................ GTATACGTGCGGCCATGCCGGGAAGCGTGCCA 184727 29 100.0 32 ............................. GACGCATTTGGCGACGACGCAGAACCTGGGCT 184788 29 100.0 32 ............................. GCGTCAAATTGATGGTGATGGCCCGCCTGGCT 184849 29 100.0 32 ............................. TGCTGTGGTGTAGTTAGGAAAGGCCAGCGAGG 184910 29 96.6 32 ........G.................... GCGGGTTGTATCCGGCTGAGGAGATTAACAAG 184971 29 96.6 32 ........G.................... CTTGCCTGGCAGGGCAGATTGATATCATAAGC 185032 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.1 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACTGTGCTGGCCGCCGGTGAAATCGAACCACCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTAATGAGCATGCTGGTCGTCGTGACGGAAAATGTCCCGCCCCGCCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGTGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAACGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTTCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGATCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTTATTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATAAATTGCCAGGTCCGGTGGGTACGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGTGGCCTTTGGCGGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //