Array 1 115858-116560 **** Predicted by CRISPRDetect 2.4 *** >NC_018610.1 Lentilactobacillus buchneri subsp. silagei CD034, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 115858 29 100.0 32 ............................. ACATGGTAGGAAAAGTCTTAGCGGCACACGTT 115919 29 96.6 32 ............................C AGTCTGGAGGACTAAACAATGAAAATAACCAT 115980 29 100.0 32 ............................. AGCGATAACTCTGCTCCAAACCCTTTGGCGTT 116041 29 100.0 32 ............................. CAAGTTCTGGTTTAGAACTTTAGGAGGTGAGC 116102 29 96.6 34 ............................A CCAGATACCGGTGGCACGATGATTCCTCACGATG 116165 29 96.6 32 ............................C GAACGTTTTACCCGCTCGGACAGCTCCGTAAT 116226 29 100.0 32 ............................. AATCTGATTTCGCTGCCCGCCTCAGTAACCCT 116287 29 100.0 32 ............................. AATTTCCGTGTTGGACGGTATGGGATAGGATG 116348 29 100.0 32 ............................. CCTTCTTGGTAATCTCTTTGTATTGCTCAGGA 116409 29 100.0 33 ............................. TCTTGAATCTGTTCATCCCGCTTGGAATCTTTG 116471 29 100.0 32 ............................. CACGGTGATAGATTTACCACGTGATTGGAGCT 116532 29 86.2 0 ...A........C........A......A | ========== ====== ====== ====== ============================= ================================== ================== 12 29 98.0 32 GTATTCCCCACGTACGTAGGGGTGATCCT # Left flank : ACCACCATCTGAATTTCGCTTCAATTCTCGAGAAACCGTTGAACAACTTTTCTGGATCTCCTTGGCGATCGCACACAGTGAGTTTCCATGGCTCCGCATTAAGAATATTGTTTCTCGTTCATCTATGGTAATATGCTGGTAGTGGTTCATGGCTAGTTTCCTTTCATGATTGTTCTCGCAAACATCATTTTACAGGAATTTGGCCATGAGCCATTCTTTATTTAATTAGTGTTGCACTTAAAGTGTAAATTCAAGCTTAAAAGTTAAAAGCTGGACTAAGTCAAAATTGAATTAAACTTTGGCTTAGTCCAGCTTTGCTATAGTTATTCGGCCTTCGAATTCGATAGGTAATCCCTTAGATGCTATACTTAAACAAGAAAATTCTTTACTAAAGAGGTTAAGCTGAACTATTTCATCGATAATATTTTGTCCAGGTTAAAGGTCATTGAAAATGAGTGTTTTGTTATTTTCAAATGGCTCAACGACGGCGTTTGTTTAGT # Right flank : ACAATTACCCCCTTATTACCTACCGTACGGGGGTCAAGCATTTAGTGAGCTTATAAATGAAGTCCACTAGTAGAAAAGGAGGCAAGTGTACTATTTTACTTGTCTCCTTTTTGTAACCGCGAAAGTTCCCAGGGAAAGTTGATAGCCAATCCTAACAGGTGGCCCATCTCCGGAAAAAGCTAACAATAATAATGCCTGTGATGTCACTCACACACTCAAAGAAAGCGCTATAATGAAATTGAATTTTATGCCATAATTTGAATCACTGTTTGCAATCAACTCGGTAGCTAAGATTGTTTCTCAAAGTTCAATTGACCATCCATAAGTGATAATAAGAAACAATATAACCCACCACTAGGAGGCCCACCCAATGCCAACCCTATCAACAAAAGCCACAACCCTCTGGGCCAAAAAGCGCCCAACCGAAAACGGCAAACAACTATGGCTGCCGCTCATTATCCATCTAATCGATACCCAAAACGTCATTAACTACCTCTTCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTACGTAGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126412-127110 **** Predicted by CRISPRDetect 2.4 *** >NC_018610.1 Lentilactobacillus buchneri subsp. silagei CD034, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126412 29 96.6 32 ............................G ACTATACCGAATCGTTCATGAAAAATCAACAA 126473 29 100.0 32 ............................. ATCCACGCCTTACACCTCTACTTCTTTGGTTT 126534 29 100.0 32 ............................. TACGAACCCAAATCGTCAAAGCATCTGGCATG 126595 29 96.6 32 ............................C CAAACGCGGAAGTCTTCAACGCTAGTGAATCG 126656 29 96.6 32 ............................C ATGTATCAGCACATTGATGGGTTAAGTGGTTA 126717 29 100.0 32 ............................. AGTGAGCGCGATTGTAGACTTCATCCAATCTT 126778 29 93.1 32 ...G...........A............. TAGTCATCGTTTGCGTGTAAGTTGATGTCGCC 126839 29 89.7 32 ...G...........A............C ATACCTGCCCGCCGTTTCCTGGAACGGACCAA 126900 29 96.6 32 ...G......................... CGGATTGAGCTTGTCAAAGAACAACAGGTCAA 126961 29 96.6 32 ...G......................... GTGGTCTTCACTGATGCCAATGATATTTACCT 127022 29 96.6 32 .............A............... CCTTACGAGACCCCGCTCGCTGCTCAGTATGT 127083 28 86.2 0 .............A........GG.-... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 95.7 32 GTATTCCCCACGTGTGTAGGGGTAATCCT # Left flank : ACCAAGGATCGTATTATTTCTATTGCGGCTGTCAAACACAGCGGAGATGGGGATCCTATCAGCTTCCAGCAACTGATTCAAATTGATCAGCCGGTTCCCCATCAGATAACCGAGTTGACGGGGATTTTGTCAGAAATGCTGACTGAACAAGGCGTTAGCTTGGAGTCGGCACTGGCATCGCTACGTGATTTTATTCAACAATTTCCGGTTGTTGGGTATAATTTGCATTTTGATGCATCATTTCTTTCTATGGCTTTCAGGAAGCTTGACCAGCCTGATTTAAGCAATCAGATGGTTGATTTGATGCCGGTGGTTAAAAAGGTTAACCAATTTCTGGATAATTATCGCCTGGAAACCGTGCTTGCAGAATATCACATCAAAAATTCTGACCCCCATCGTGCGTTAGCCGATGCGAAGGCAACTTTGTCCTTAGCGTTGAAGTTGATTGAAAATGGCGATTTGACGATTTGAGAATGGCTTTAGGACGCGGTTTGTTTAGT # Right flank : TCCAATCCAAACCAAACAAAAAACGACTTCACCAACCAAAGGCAAAGCCGTTTTTCAACATCCTCAAAGATCCTTATTTCAAATACATCGCCCGCAACTTAGCAATATCGGTATTCGAAACCCTGAGGCCCTTATTCAAGAAATTATCCATCGTGCCATAATGCTTCTTCACCGCCGAGTAAGTGGCGTTGATGTAAGCAGGTTTGACATCTTCTAGTGCCTTCACTGTCTGGAGTTCCTTTTGAGAGGCGCCACTCTTCTTCAACTGAGCATAATGTTTTTCATAAACCCCCTTGGTTGCCAAATAGTCGTCGACAATCGTCAGCTTCTTGACGCCGAGTGCTGACAAGATGAAAATCGTTCCGGCACCTGCCCGGTCCTTGCCGGCTGAACAATGATACAAGACTGCGGAGTTCCCTTTATTATTCAAAAGAGTGGTGAATAGGTTGTGATAAGCGGTTCGAGCTTGTTTGGTAGTGACAAAATTTGTATAGCCCTGT # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTGTGTAGGGGTAATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 128332-129889 **** Predicted by CRISPRDetect 2.4 *** >NC_018610.1 Lentilactobacillus buchneri subsp. silagei CD034, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 128332 29 100.0 32 ............................. TTGCCGATCCACAACCGATGTAAATTCATCAA 128393 29 96.6 32 ............................T AGACAGGTGCAACTAGAGCCGCCGCAAAAATA 128454 29 96.6 32 ............................T GTTCACCCCGAAGTGTTTCAAGGCACTGGCAA 128515 29 100.0 32 ............................. AAGCGACTGAAAAAGCTAAGAGTACCAGTAAA 128576 29 96.6 32 ............................T TGCATTCTCAGGGAATAGTGTTCAAGCCGCTA 128637 29 96.6 32 ..................A.......... AAGCGACTGAAAAAGCTAAGAGTACCAGTAAA 128698 29 100.0 32 ............................. GACTCCAAAGTCGGACCTCACCAAGAAGCAAT 128759 29 100.0 32 ............................. TCCAGGCAGGGATTTGCACCCTACAAGCCTCT 128820 29 100.0 33 ............................. CATCAGCTGATTATTTCAGGGTTTGAGACTCTG 128882 29 100.0 32 ............................. TTGATCCCGACGTTTCCACCTTTATCAAAAGC 128943 29 100.0 32 ............................. CCAGGTGTCACCATGAAGTGAATCGATGTACT 129004 29 100.0 32 ............................. AATTGAGAACTGGAACACAACCACGATCAGTA 129065 29 96.6 32 ............................T AGGAATGGCATATCGCGTCGCATCAATTGAAT 129126 29 96.6 32 ............................T AAGGCTGAAACTTACCTGAAGCGATTGATTGA 129187 29 100.0 32 ............................. TGGCGCTCGTGTTGGCGAGGTTGCCAATCTCA 129248 29 96.6 32 ............................T ATGCTGCCGGGCACCGGGTCGATGTAATGGGC 129309 29 100.0 32 ............................. ATGAAACTAGCAGGCCAAACAGACCCAGCCAG 129370 29 100.0 32 ............................. AAGCCCGGTCGGCATTGTACGAGTCAGATCCT 129431 29 96.6 32 ............................T GATGATAGCCACGATGAGGGCGACAACAATGC 129492 29 96.6 32 ............................T CGCGTTCACAGCGTCCTGCCAATGGTCAATCA 129553 29 96.6 32 ............................T ATAAGAGTTGGGGGACAGCAGCCTTGCTCTCA 129614 29 96.6 32 ............................T CTTCCAAGTGAGGCGGTAAGGAGCATTTTATG 129675 29 93.1 32 .......T....................T TACGGTGGCGATCACATTGACCCATACGGCTA 129736 29 86.2 32 ...........A.G...........A..T TCACGGTGTCCAGATTTTTGCCGGAACTCCCA 129797 29 89.7 32 ...........A.G..............T GCTCGCGCGGGACCCGGCTTCCCTGGACCCTT GGG [129815] 129861 29 86.2 0 ........T.....T..G..........T | ========== ====== ====== ====== ============================= ================================= ================== 26 29 96.8 32 GTATTCCCCACGTACGTAGGGGTGATCCC # Left flank : CTTTTGATCGTTTTTCCATCAGTGGTTCGATACCCGCCCAAGTCTCGGACGTTCATGGCGCCTTTCAAATCAATTTCATGCACTTTGACTCCCTGGGTTGCCACGACCTGGGCATTTGCTGGAGCAACCGATTGGATGGCTGCGCCCGTAGCGGAGAAGACGGCCAGTGCCAGGGATGCAATCAGAACAGATTTTTTCAATGTGATTTCCTCCAAACTTTTTTGATTCAGTGTTTAGTTTACGGGAGGCGTGTAATGATTTTGTTTGCATAAGGTAATGATTTGGTAAATGATGCTTAGCAGATTTTTTGCTGGATACCAGAGGATCGTGAAATAAAATGGTTGATGGAGCTGTACACTATTGGGATAATTAAAACGGCAGAATCGGCTGATTTGTTTCATGCGACTAAATAATTAAGGTCAGATGCTTTCGTATTTGCAAGTCATTGAAAATGAGTGTTTTGTCATTTTCAAATGGCTTAATGGCGGCGTTTCTTTAGT # Right flank : TGCGACTAACGAACTTCAAATGATGGATTCTTAGTATTCCCCACATGTGTGGGGGCTCCTTTCTTGCAAAAAACTATTTTCACAAACGCGTTGGGTTGGCTCCAAAAAGGTGGAACACATTCAGAAAAGTTCAAGACAAAAATTAGCCTCTGATGGCGCAACAGTTGTAACCCGCCGCTCAAGTCCGGCAATAATTCTGCCGAAACTCAAAAATAGCACCTAACCAGTTGGCTTTCACCAACTAGTCAGGTGCTATTAGTATTTTGCGTAACCATCAACCAATTTCAAAACAGATACAATAATTTGAAAATGCCATATAGATTTCGTTTCTAACGATAATTGTCTAACATCTTAAACTTATGGTTGTCTTGGAAATATGCTCCAACCTTTAGCAACAATTTATCATTACCCTTAGCCGCCTCAAATTGAATTCCCAGCGGCATTTTCTGCTTGCTAACATATGTTGGTAAACTGATTGCCGGCTCTCCTGAAAGGTTGGC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTACGTAGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1942866-1941773 **** Predicted by CRISPRDetect 2.4 *** >NC_018610.1 Lentilactobacillus buchneri subsp. silagei CD034, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1942865 36 97.2 30 ................................C... CCCAATCTTTTGCGCTTTCGTCATTCGCCG 1942799 36 100.0 30 .................................... AAACAATTGGGTTGGTTTAATATTGAATTG 1942733 36 100.0 30 .................................... TGCAAGAATCAACAGGTTTCAGTCATCGCT 1942667 36 100.0 30 .................................... CTTCAGGAAAAGGAATCAGTTCAGCGGTTG 1942601 36 100.0 30 .................................... TTCCCGTGCACCTTTTTCGCTGCTGTAAAA 1942535 36 100.0 30 .................................... ACGGGGGTGGCTTTTTGTATGCCGCAACCC 1942469 36 100.0 30 .................................... CTGAAGATTATTTGCTAATGATATAATATG 1942403 36 100.0 30 .................................... ATTGATGGATGGTGGTCAACCATCTGTCTT 1942337 36 100.0 30 .................................... TTGGCAGCACAAATCAAAGCATTGACACCG 1942271 36 100.0 30 .................................... TATCGAACAATAAAAGGCGGTGTAATTATG 1942205 36 100.0 30 .................................... GGAAATCAATTGGAGGGTATTACAATGAAT 1942139 36 100.0 30 .................................... CAAATCAAATCTACATACTTCCAAATCATT 1942073 36 100.0 30 .................................... ATGGATGAATAAATAGTGTCCATTTTAGAC 1942007 36 100.0 30 .................................... TTAATGTATAAGTGGATCCCGAGATTGTGG 1941941 36 100.0 31 .................................... ATGACAGTTCTGATGATGATTCAGTTAATGG 1941874 36 100.0 30 .................................... CCGACGATCCACTAGCTGTGGAAAATGTGA 1941808 36 83.3 0 ...............C........C......G.GAT | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 98.9 30 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Left flank : CAGCGATGGTGTCAGTGACAAGTATAATTCTGGCATTTTTAAGCAATTAGAGGCTGTGTTGACTGATGATCAGCGTAAATCGATAACTGATATTAATAATCAATTGTATACGGTCGTCCAGCAGTGTTTGTTTATGATCGACTTACCTCTGGAAGTCACTTATGATTGGGATTTAAAGAGGCTGTTTAAATACTGTAAAATTCATTTTAACGCTGATACCATGCTGAATCCTTATGCTATAATTGAATCAATTATCAAAATTCATTTAGAGTGTGGATTGAAGTCGGCTGTTGGTTTAACTAATGTCGCTCATTATCTTAATCAGCAGCAATTAATTGATCTATCCAAGCTCACAAGTTCCGCGGGGATCTCGACATTATTAGTAGAATTCACAGATATGAAGTCACAGGAGCTTTATACCAATTGCGACTTTTACTACATCGACGAGGACTTTGTTGATTGGCATTTATAATGCATTAAAATTCGGTTATAAAAAATCG # Right flank : GGCTTCTCAACAGATCATTCATTCTGGATCATCTTCCACCACTAAAAAATAAGTTCTCCGCCTAGTATTTGCTAAGCAGGGAACTTATTGTGTTTATTTATTTAACAATTGACTTAGCCAACGCATACCCCAGCTTCTGAGCCGTTTGGGCAGTTGGATGAATCTCATGATCCTTCAAAGTGACATCCTTGTTGCTGTTAGTGATAATGTTGGGTGCGATCTGTTGGAAATTGACCACTTTGGCGCCCATTGACTTGTAGAGCCTTGCTTCAGCTGCCCGCAAGTCGTGGTAGGTGTAGCCATACATATCACTCATGTTGTCACGATTCATGCCATTGGCGTCAAACCGTGAAATTGGCAGGATGCCGTAAATCTTGGCGGACGGATTCAACTTTTGAATCATCTTAATGTTATAGCGCAGGTGGCGCATGACATTCTTCAAACTTCCCGAACCGGAATAGTTGGTGTAATCATTGGTCCCGATATGAACGAAGATGACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //